Wall clock time and date at job start Mon Mar 30 2020 20:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47273 * 2 1 4 4 C 1.52993 * 109.47337 * 120.00787 * 2 1 3 5 5 N 1.46905 * 109.47208 * 174.92450 * 4 2 1 6 6 C 1.46898 * 110.99909 * 179.97438 * 5 4 2 7 7 C 1.50700 * 109.47175 * 179.97438 * 6 5 4 8 8 H 1.08004 * 119.99757 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00169 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99850 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99833 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.46839 * 90.00126 * 11 9 7 13 13 H 1.48497 * 109.46750 * 210.00182 * 11 9 7 14 14 H 1.48502 * 109.47013 * 330.00223 * 11 9 7 15 15 N 1.46907 * 109.46814 * 240.00684 * 2 1 3 16 16 C 1.47012 * 110.99974 * 71.44174 * 15 2 1 17 17 C 1.53100 * 109.25807 * 177.60506 * 16 15 2 18 18 O 1.43024 * 109.25321 * 56.85045 * 17 16 15 19 19 C 1.43019 * 113.73761 * 301.32345 * 18 17 16 20 20 C 1.47012 * 110.99761 * 307.80302 * 15 2 1 21 21 H 1.08995 * 109.47732 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47021 * 299.99423 * 1 2 3 23 23 H 1.09001 * 109.47064 * 59.98983 * 1 2 3 24 24 H 1.08996 * 109.47645 * 54.92215 * 4 2 1 25 25 H 1.09005 * 109.47022 * 294.91874 * 4 2 1 26 26 H 1.00893 * 111.00109 * 56.04154 * 5 4 2 27 27 H 1.09004 * 109.47091 * 299.99702 * 6 5 4 28 28 H 1.09000 * 109.47561 * 59.99668 * 6 5 4 29 29 H 0.96995 * 119.99768 * 179.97438 * 10 9 7 30 30 H 1.09005 * 109.50776 * 297.53973 * 16 15 2 31 31 H 1.09004 * 109.51032 * 57.67041 * 16 15 2 32 32 H 1.08997 * 109.50696 * 296.91454 * 17 16 15 33 33 H 1.08999 * 109.54189 * 176.79920 * 17 16 15 34 34 H 1.08997 * 109.50678 * 298.74402 * 19 18 17 35 35 H 1.09000 * 109.53920 * 178.62967 * 19 18 17 36 36 H 1.08997 * 109.51119 * 302.32576 * 20 15 2 37 37 H 1.09005 * 109.50426 * 62.42043 * 20 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5039 -0.8284 1.1893 6 6 4.0303 -1.5167 2.3755 7 6 5.5314 -1.6080 2.2786 8 1 6.0431 -1.1962 1.4213 9 6 6.2514 -2.2172 3.2843 10 7 5.6282 -2.7190 4.3280 11 14 8.1121 -2.3308 3.1637 12 1 8.7229 -1.1319 3.7919 13 1 8.5801 -3.5515 3.8681 14 1 8.5123 -2.3995 1.7353 15 7 2.0196 -0.6924 -1.1996 16 6 1.7833 0.1134 -2.4063 17 6 2.3608 -0.6165 -3.6219 18 8 1.7718 -1.9165 -3.7151 19 6 1.9832 -2.7286 -2.5569 20 6 1.4020 -2.0201 -1.3305 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5140 -0.8899 24 1 1.6044 -1.7194 1.2957 25 1 1.7529 -0.1578 2.1368 26 1 3.9288 0.0803 1.0807 27 1 3.7569 -0.9583 3.2708 28 1 3.6084 -2.5203 2.4304 29 1 6.1347 -3.1479 5.0353 30 1 0.7116 0.2577 -2.5436 31 1 2.2707 1.0824 -2.2982 32 1 3.4406 -0.7132 -3.5093 33 1 2.1383 -0.0506 -4.5266 34 1 3.0521 -2.8867 -2.4134 35 1 1.4877 -3.6902 -2.6906 36 1 1.6111 -2.6085 -0.4371 37 1 0.3241 -1.9099 -1.4498 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308655152.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:54:20 Heat of formation + Delta-G solvation = -39.534061 kcal Electronic energy + Delta-G solvation = -16552.911071 eV Core-core repulsion = 13944.201628 eV Total energy + Delta-G solvation = -2608.709443 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.65422 -36.91112 -34.51225 -32.38783 -31.07656 -30.68624 -27.15675 -26.36099 -24.25592 -23.83868 -21.31166 -21.06461 -19.31698 -16.71789 -16.32070 -15.89251 -15.08183 -14.88430 -14.74851 -14.53238 -14.30317 -13.84584 -13.58063 -12.81513 -12.40538 -12.21282 -12.04347 -11.75153 -11.56251 -11.39266 -11.14515 -11.00836 -10.68185 -10.58755 -10.38250 -10.26296 -9.82882 -9.51429 -9.11237 -8.43355 -7.96964 -7.09621 -5.98776 -3.99815 3.34530 3.40429 3.45715 3.89458 4.04866 4.47002 4.89438 5.05669 5.08939 5.19031 5.27719 5.33163 5.37259 5.39343 5.45774 5.66310 5.70774 5.76863 5.84678 5.92102 5.93407 6.02685 6.06168 6.16705 6.30764 6.41876 7.19100 7.23419 7.32481 7.36028 7.48937 7.86061 8.20276 8.51761 8.72578 9.10742 9.64974 11.12511 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.030939 B = 0.006128 C = 0.005563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.796435 B = 4567.721995 C = 5032.226906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.084 3.916 3 H 0.077 0.923 4 C 0.069 3.931 5 N -0.670 5.670 6 C 0.194 3.806 7 C -0.509 4.509 8 H 0.062 0.938 9 C 0.054 3.946 10 N -0.900 5.900 11 Si 0.898 3.102 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.273 1.273 15 N -0.502 5.502 16 C 0.016 3.984 17 C 0.065 3.935 18 O -0.393 6.393 19 C 0.064 3.936 20 C 0.020 3.980 21 H 0.060 0.940 22 H 0.060 0.940 23 H 0.052 0.948 24 H 0.061 0.939 25 H 0.019 0.981 26 H 0.327 0.673 27 H -0.019 1.019 28 H 0.025 0.975 29 H 0.260 0.740 30 H 0.035 0.965 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.885 4.718 -11.917 16.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.025 4.025 3 H 0.095 0.905 4 C -0.062 4.062 5 N -0.300 5.300 6 C 0.067 3.933 7 C -0.547 4.547 8 H 0.081 0.919 9 C -0.147 4.147 10 N -0.540 5.540 11 Si 0.726 3.274 12 H -0.208 1.208 13 H -0.213 1.213 14 H -0.198 1.198 15 N -0.226 5.226 16 C -0.113 4.113 17 C -0.012 4.012 18 O -0.311 6.311 19 C -0.013 4.013 20 C -0.108 4.108 21 H 0.079 0.921 22 H 0.079 0.921 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.037 0.963 26 H 0.143 0.857 27 H -0.001 1.001 28 H 0.043 0.957 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -9.438 3.902 -12.241 15.943 hybrid contribution 0.091 0.803 1.049 1.324 sum -9.347 4.706 -11.193 15.323 Atomic orbital electron populations 1.22446 0.97968 1.02259 1.01782 1.21788 0.91722 0.97987 0.90968 0.90486 1.21897 0.92099 0.98922 0.93240 1.60517 1.01320 1.24426 1.43753 1.19547 0.95003 0.93690 0.85077 1.21206 0.91546 1.36907 1.05070 0.91942 1.24995 0.98751 0.95629 0.95318 1.69965 1.35592 1.39083 1.09387 0.86500 0.85385 0.77353 0.78180 1.20805 1.21312 1.19764 1.62275 1.57412 1.02020 1.00934 1.22787 0.99051 0.97843 0.91572 1.22615 0.97808 0.83699 0.97066 1.87918 1.77470 1.26022 1.39718 1.22678 1.01299 0.93246 0.84094 1.22767 0.96248 0.91791 0.99957 0.92125 0.92094 0.92885 0.92044 0.96274 0.85700 1.00085 0.95732 0.93022 0.94649 0.90085 0.92069 0.89158 0.91696 0.88986 0.88972 0.94546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.21 8.40 37.16 0.31 -1.90 16 2 C 0.08 1.20 2.54 -67.71 -0.17 1.03 16 3 H 0.08 1.07 8.01 -51.93 -0.42 0.65 16 4 C 0.07 1.22 4.90 -3.82 -0.02 1.20 16 5 N -0.67 -14.45 6.21 -115.06 -0.72 -15.17 16 6 C 0.19 5.14 5.44 -4.98 -0.03 5.11 16 7 C -0.51 -14.62 9.32 -34.44 -0.32 -14.95 16 8 H 0.06 1.78 7.81 -52.48 -0.41 1.37 16 9 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 10 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 11 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 15 N -0.50 -7.35 4.39 -226.32 -0.99 -8.34 16 16 C 0.02 0.20 5.40 -3.71 -0.02 0.18 16 17 C 0.07 0.79 7.01 37.21 0.26 1.05 16 18 O -0.39 -5.51 10.83 -35.23 -0.38 -5.89 16 19 C 0.06 0.86 7.01 37.21 0.26 1.12 16 20 C 0.02 0.29 4.77 -3.71 -0.02 0.27 16 21 H 0.06 0.73 6.37 -51.93 -0.33 0.40 16 22 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.05 0.59 6.80 -51.93 -0.35 0.23 16 24 H 0.06 1.11 6.80 -51.93 -0.35 0.76 16 25 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.33 6.87 8.72 -39.30 -0.34 6.53 16 27 H -0.02 -0.52 8.14 -51.93 -0.42 -0.95 16 28 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.04 0.42 6.78 -51.93 -0.35 0.07 16 31 H 0.08 0.92 8.07 -51.93 -0.42 0.50 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.09 1.43 6.55 -51.93 -0.34 1.09 16 37 H 0.04 0.48 6.36 -51.93 -0.33 0.15 16 LS Contribution 291.55 15.07 4.39 4.39 Total: -1.00 -30.76 291.55 -7.99 -38.75 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -6.16 Total: 1.23 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: 0.16 Total: -5.42 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: -0.97 Total: -50.03 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: -0.38 Total: -5.89 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.76 -7.99 -38.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308655152.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.785 kcal (2) G-P(sol) polarization free energy of solvation -30.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds