Wall clock time and date at job start Mon Mar 30 2020 20:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47273 * 2 1 4 4 C 1.52993 * 109.47337 * 120.00787 * 2 1 3 5 5 N 1.46905 * 109.47208 * 174.92450 * 4 2 1 6 6 C 1.46898 * 110.99909 * 179.97438 * 5 4 2 7 7 C 1.50700 * 109.47175 * 179.97438 * 6 5 4 8 8 H 1.08004 * 119.99757 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00169 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99850 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99833 * 179.97438 * 9 7 6 12 12 H 1.48494 * 109.46839 * 90.00126 * 11 9 7 13 13 H 1.48497 * 109.46750 * 210.00182 * 11 9 7 14 14 H 1.48502 * 109.47013 * 330.00223 * 11 9 7 15 15 N 1.46907 * 109.46814 * 240.00684 * 2 1 3 16 16 C 1.47012 * 110.99974 * 71.44174 * 15 2 1 17 17 C 1.53100 * 109.25807 * 177.60506 * 16 15 2 18 18 O 1.43024 * 109.25321 * 56.85045 * 17 16 15 19 19 C 1.43019 * 113.73761 * 301.32345 * 18 17 16 20 20 C 1.47012 * 110.99761 * 307.80302 * 15 2 1 21 21 H 1.08995 * 109.47732 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47021 * 299.99423 * 1 2 3 23 23 H 1.09001 * 109.47064 * 59.98983 * 1 2 3 24 24 H 1.08996 * 109.47645 * 54.92215 * 4 2 1 25 25 H 1.09005 * 109.47022 * 294.91874 * 4 2 1 26 26 H 1.00893 * 111.00109 * 56.04154 * 5 4 2 27 27 H 1.09004 * 109.47091 * 299.99702 * 6 5 4 28 28 H 1.09000 * 109.47561 * 59.99668 * 6 5 4 29 29 H 0.96995 * 119.99768 * 179.97438 * 10 9 7 30 30 H 1.09005 * 109.50776 * 297.53973 * 16 15 2 31 31 H 1.09004 * 109.51032 * 57.67041 * 16 15 2 32 32 H 1.08997 * 109.50696 * 296.91454 * 17 16 15 33 33 H 1.08999 * 109.54189 * 176.79920 * 17 16 15 34 34 H 1.08997 * 109.50678 * 298.74402 * 19 18 17 35 35 H 1.09000 * 109.53920 * 178.62967 * 19 18 17 36 36 H 1.08997 * 109.51119 * 302.32576 * 20 15 2 37 37 H 1.09005 * 109.50426 * 62.42043 * 20 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5039 -0.8284 1.1893 6 6 4.0303 -1.5167 2.3755 7 6 5.5314 -1.6080 2.2786 8 1 6.0431 -1.1962 1.4213 9 6 6.2514 -2.2172 3.2843 10 7 5.6282 -2.7190 4.3280 11 14 8.1121 -2.3308 3.1637 12 1 8.7229 -1.1319 3.7919 13 1 8.5801 -3.5515 3.8681 14 1 8.5123 -2.3995 1.7353 15 7 2.0196 -0.6924 -1.1996 16 6 1.7833 0.1134 -2.4063 17 6 2.3608 -0.6165 -3.6219 18 8 1.7718 -1.9165 -3.7151 19 6 1.9832 -2.7286 -2.5569 20 6 1.4020 -2.0201 -1.3305 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5140 -0.8899 24 1 1.6044 -1.7194 1.2957 25 1 1.7529 -0.1578 2.1368 26 1 3.9288 0.0803 1.0807 27 1 3.7569 -0.9583 3.2708 28 1 3.6084 -2.5203 2.4304 29 1 6.1347 -3.1479 5.0353 30 1 0.7116 0.2577 -2.5436 31 1 2.2707 1.0824 -2.2982 32 1 3.4406 -0.7132 -3.5093 33 1 2.1383 -0.0506 -4.5266 34 1 3.0521 -2.8867 -2.4134 35 1 1.4877 -3.6902 -2.6906 36 1 1.6111 -2.6085 -0.4371 37 1 0.3241 -1.9099 -1.4498 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308655152.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:54:20 Heat of formation + Delta-G solvation = -63.131934 kcal Electronic energy + Delta-G solvation = -16553.934351 eV Core-core repulsion = 13944.201628 eV Total energy + Delta-G solvation = -2609.732724 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.74041 -38.16154 -36.24183 -34.37713 -32.19418 -31.91117 -29.00246 -27.44995 -25.89766 -24.94430 -23.28054 -22.27754 -20.45399 -18.54891 -17.74595 -17.04042 -16.66508 -16.18352 -15.99229 -15.91942 -15.57770 -15.20825 -15.02884 -14.38357 -14.10487 -13.48530 -13.24850 -13.10529 -13.04599 -12.88674 -12.62983 -12.46614 -12.35228 -12.08047 -11.94896 -11.52118 -11.36440 -11.21603 -10.65167 -10.58461 -9.06039 -8.92794 -8.20916 -6.31476 1.41244 1.43143 1.55121 2.41226 2.83258 3.03481 3.12254 3.61421 3.91310 4.01383 4.06223 4.22894 4.30519 4.36940 4.38767 4.46555 4.64841 4.65838 4.73438 4.79303 4.83763 4.89249 4.96477 5.05700 5.10111 5.13449 5.26902 5.30593 5.64106 6.04666 6.13832 6.20090 6.27736 6.53900 6.80587 6.96448 7.39679 8.90738 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.030939 B = 0.006128 C = 0.005563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.796435 B = 4567.721995 C = 5032.226906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.092 3.908 3 H 0.085 0.915 4 C 0.070 3.930 5 N -0.666 5.666 6 C 0.210 3.790 7 C -0.530 4.530 8 H 0.063 0.937 9 C 0.000 4.000 10 N -0.936 5.936 11 Si 0.972 3.028 12 H -0.271 1.271 13 H -0.282 1.282 14 H -0.266 1.266 15 N -0.525 5.525 16 C 0.019 3.981 17 C 0.062 3.938 18 O -0.402 6.402 19 C 0.066 3.934 20 C 0.025 3.975 21 H 0.056 0.944 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.051 0.949 25 H 0.019 0.981 26 H 0.332 0.668 27 H -0.045 1.045 28 H -0.005 1.005 29 H 0.264 0.736 30 H 0.045 0.955 31 H 0.093 0.907 32 H 0.050 0.950 33 H 0.119 0.881 34 H 0.045 0.955 35 H 0.110 0.890 36 H 0.070 0.930 37 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.821 5.652 -13.233 17.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.016 4.016 3 H 0.103 0.897 4 C -0.060 4.060 5 N -0.296 5.296 6 C 0.082 3.918 7 C -0.569 4.569 8 H 0.081 0.919 9 C -0.198 4.198 10 N -0.577 5.577 11 Si 0.797 3.203 12 H -0.196 1.196 13 H -0.207 1.207 14 H -0.190 1.190 15 N -0.250 5.250 16 C -0.109 4.109 17 C -0.015 4.015 18 O -0.321 6.321 19 C -0.011 4.011 20 C -0.104 4.104 21 H 0.075 0.925 22 H 0.088 0.912 23 H 0.087 0.913 24 H 0.070 0.930 25 H 0.038 0.962 26 H 0.148 0.852 27 H -0.027 1.027 28 H 0.013 0.987 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.111 0.889 32 H 0.068 0.932 33 H 0.137 0.863 34 H 0.064 0.936 35 H 0.128 0.872 36 H 0.088 0.912 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.392 4.855 -13.577 17.208 hybrid contribution 0.024 0.524 1.446 1.538 sum -9.368 5.379 -12.131 16.244 Atomic orbital electron populations 1.22346 0.95760 1.02444 1.02984 1.21656 0.93317 0.97512 0.89165 0.89667 1.21970 0.89481 0.99079 0.95494 1.60394 1.03790 1.24497 1.40949 1.19182 0.94431 0.92273 0.85923 1.21544 0.92693 1.37297 1.05321 0.91892 1.25955 1.04206 0.94904 0.94738 1.70094 1.37772 1.39634 1.10172 0.85339 0.78741 0.77734 0.78515 1.19624 1.20730 1.18986 1.62222 1.58242 1.02582 1.01958 1.22827 0.99807 0.97889 0.90365 1.22789 0.97103 0.83246 0.98353 1.87909 1.77592 1.26848 1.39708 1.22668 1.00300 0.94123 0.83995 1.22680 0.96932 0.91559 0.99185 0.92453 0.91244 0.91295 0.93005 0.96249 0.85166 1.02722 0.98712 0.92693 0.93643 0.88903 0.93210 0.86348 0.93612 0.87157 0.91159 0.93348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.81 8.40 71.98 0.60 -3.20 16 2 C 0.09 2.50 2.54 44.91 0.11 2.61 16 3 H 0.09 2.19 8.01 -2.38 -0.02 2.17 16 4 C 0.07 2.48 4.90 86.30 0.42 2.90 16 5 N -0.67 -29.16 6.21 -517.93 -3.22 -32.38 16 6 C 0.21 11.52 5.44 85.56 0.47 11.98 16 7 C -0.53 -30.92 9.32 25.60 0.24 -30.68 16 8 H 0.06 3.59 7.81 -2.91 -0.02 3.56 16 9 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 10 N -0.94 -57.53 13.29 21.45 0.28 -57.25 16 11 Si 0.97 45.04 29.54 68.60 2.03 47.06 16 12 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 13 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 14 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 15 N -0.53 -14.70 4.39 -869.95 -3.82 -18.52 16 16 C 0.02 0.42 5.40 86.32 0.47 0.89 16 17 C 0.06 1.37 7.01 72.02 0.50 1.88 16 18 O -0.40 -10.60 10.83 -148.98 -1.61 -12.21 16 19 C 0.07 1.74 7.01 72.02 0.50 2.25 16 20 C 0.02 0.68 4.77 86.32 0.41 1.09 16 21 H 0.06 1.28 6.37 -2.39 -0.02 1.27 16 22 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.07 1.30 6.80 -2.39 -0.02 1.28 16 24 H 0.05 1.93 6.80 -2.39 -0.02 1.91 16 25 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 26 H 0.33 13.96 8.72 -89.70 -0.78 13.18 16 27 H -0.04 -2.64 8.14 -2.38 -0.02 -2.66 16 28 H -0.01 -0.32 8.14 -2.39 -0.02 -0.33 16 29 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 30 H 0.05 0.94 6.78 -2.38 -0.02 0.92 16 31 H 0.09 1.84 8.07 -2.38 -0.02 1.82 16 32 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.07 2.22 6.55 -2.39 -0.02 2.21 16 37 H 0.05 1.21 6.36 -2.38 -0.02 1.19 16 Total: -1.00 -65.89 291.55 -1.89 -67.78 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: 0.26 Total: 15.35 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: 4.20 Total: -9.84 kcal Atomic # 7 Polarization: -101.39 SS G_CDS: -6.75 Total: -108.15 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: -1.61 Total: -12.21 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -65.89 -1.89 -67.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308655152.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.648 kcal (2) G-P(sol) polarization free energy of solvation -65.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds