Wall clock time and date at job start Mon Mar 30 2020 20:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34729 * 125.15176 * 2 1 4 4 C 1.41590 * 107.92770 * 179.97438 * 3 2 1 5 5 C 1.40521 * 133.31508 * 180.02562 * 4 3 2 6 6 C 1.35714 * 120.15703 * 180.27636 * 5 4 3 7 7 C 1.50706 * 119.83552 * 179.71929 * 6 5 4 8 8 C 1.41266 * 120.33519 * 359.45629 * 6 5 4 9 9 C 1.41022 * 119.97002 * 180.27739 * 8 6 5 10 10 H 1.08000 * 119.99912 * 26.13733 * 9 8 6 11 11 C 1.39888 * 119.99831 * 206.13519 * 9 8 6 12 12 N 1.30883 * 119.99992 * 15.58947 * 11 9 8 13 13 Si 1.86795 * 120.00042 * 195.59375 * 11 9 8 14 14 H 1.48499 * 109.47254 * 59.99945 * 13 11 9 15 15 H 1.48499 * 109.47143 * 179.97438 * 13 11 9 16 16 H 1.48496 * 109.46952 * 299.99952 * 13 11 9 17 17 C 1.40592 * 120.05649 * 0.53915 * 8 6 5 18 18 C 1.38203 * 119.57746 * 359.74130 * 17 8 6 19 19 N 1.36654 * 125.14764 * 179.97438 * 2 1 3 20 20 C 1.46500 * 125.58865 * 0.04892 * 19 2 1 21 21 H 1.08999 * 109.46704 * 90.02978 * 1 2 3 22 22 H 1.09004 * 109.47266 * 210.02204 * 1 2 3 23 23 H 1.08991 * 109.47137 * 330.02969 * 1 2 3 24 24 H 1.08004 * 126.03094 * 0.02562 * 3 2 1 25 25 H 1.08006 * 119.92044 * 359.97438 * 5 4 3 26 26 H 1.09006 * 109.46512 * 90.00119 * 7 6 5 27 27 H 1.08994 * 109.47501 * 209.99736 * 7 6 5 28 28 H 1.08999 * 109.46515 * 330.00277 * 7 6 5 29 29 H 0.97001 * 120.00077 * 180.02562 * 12 11 9 30 30 H 1.07994 * 120.21260 * 179.71181 * 17 8 6 31 31 H 1.09005 * 109.46957 * 89.97387 * 20 19 2 32 32 H 1.08998 * 109.47030 * 209.96893 * 20 19 2 33 33 H 1.08998 * 109.47085 * 329.97225 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2827 1.1016 0.0000 4 6 3.6351 0.6823 0.0006 5 6 4.8586 1.3734 0.0013 6 6 6.0294 0.6871 -0.0039 7 6 7.3374 1.4356 -0.0094 8 6 6.0283 -0.7256 0.0015 9 6 7.2494 -1.4310 0.0020 10 1 8.1377 -0.9725 0.4106 11 6 7.3099 -2.7247 -0.5268 12 7 6.3406 -3.1670 -1.2869 13 14 8.7742 -3.8209 -0.1481 14 1 8.8709 -4.0282 1.3192 15 1 8.5983 -5.1323 -0.8222 16 1 10.0171 -3.1739 -0.6395 17 6 4.8109 -1.4288 0.0009 18 6 3.6190 -0.7292 0.0004 19 7 2.2937 -1.1174 0.0005 20 6 1.8104 -2.5004 0.0001 21 1 -0.3633 -0.0005 -1.0277 22 1 -0.3634 -0.8898 0.5142 23 1 -0.3633 0.8902 0.5133 24 1 1.9343 2.1239 0.0004 25 1 4.8673 2.4535 0.0011 26 1 7.6571 1.6159 1.0170 27 1 8.0926 0.8438 -0.5266 28 1 7.2083 2.3886 -0.5226 29 1 6.3824 -4.0642 -1.6533 30 1 4.8071 -2.5087 0.0003 31 1 1.6908 -2.8431 -1.0277 32 1 2.5306 -3.1370 0.5139 33 1 0.8503 -2.5498 0.5137 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260856429.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:51:44 Heat of formation + Delta-G solvation = 40.847091 kcal Electronic energy + Delta-G solvation = -15520.166197 eV Core-core repulsion = 13124.532600 eV Total energy + Delta-G solvation = -2395.633597 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 229.116 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.14798 -36.54919 -33.50981 -31.85949 -31.20580 -29.32657 -27.70098 -26.30002 -24.46632 -23.50486 -20.50846 -19.38197 -18.72860 -16.92283 -15.85273 -14.87138 -14.59459 -14.50004 -13.49847 -13.11960 -12.89094 -12.70820 -12.51248 -12.30388 -12.26120 -11.68559 -11.58993 -11.46049 -11.27052 -11.07928 -10.85443 -10.69664 -10.45080 -9.68748 -9.50503 -9.34382 -8.97506 -8.22713 -6.83188 -6.59804 -6.37579 -4.19949 2.52269 2.98334 3.08800 3.12190 3.28086 3.85859 3.88741 3.98008 4.75557 5.40006 5.50044 5.57907 5.66545 5.78913 5.94225 5.97960 6.10378 6.14827 6.38630 6.41987 6.63011 6.68016 6.70390 6.88418 7.01547 7.18033 7.36251 7.36818 7.54443 7.91681 7.97880 8.08820 8.29455 8.39198 8.56058 8.74852 8.97600 9.07040 10.27089 Molecular weight = 229.12amu Principal moments of inertia in cm(-1) A = 0.029661 B = 0.008886 C = 0.006994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.772376 B = 3150.137083 C = 4002.610895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.008 3.992 3 C -0.184 4.184 4 C -0.194 4.194 5 C -0.071 4.071 6 C -0.170 4.170 7 C -0.088 4.088 8 C 0.126 3.874 9 C -0.455 4.455 10 H 0.080 0.920 11 C 0.074 3.926 12 N -0.794 5.794 13 Si 0.905 3.095 14 H -0.265 1.265 15 H -0.280 1.280 16 H -0.266 1.266 17 C -0.206 4.206 18 C 0.130 3.870 19 N -0.493 5.493 20 C 0.092 3.908 21 H 0.060 0.940 22 H 0.054 0.946 23 H 0.070 0.930 24 H 0.119 0.881 25 H 0.091 0.909 26 H 0.044 0.956 27 H 0.063 0.937 28 H 0.039 0.961 29 H 0.277 0.723 30 H 0.117 0.883 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.600 1.083 1.687 5.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.097 4.097 3 C -0.210 4.210 4 C -0.197 4.197 5 C -0.090 4.090 6 C -0.171 4.171 7 C -0.145 4.145 8 C 0.122 3.878 9 C -0.485 4.485 10 H 0.098 0.902 11 C -0.143 4.143 12 N -0.420 5.420 13 Si 0.730 3.270 14 H -0.190 1.190 15 H -0.205 1.205 16 H -0.190 1.190 17 C -0.229 4.229 18 C 0.026 3.974 19 N -0.180 5.180 20 C -0.050 4.050 21 H 0.079 0.921 22 H 0.073 0.927 23 H 0.088 0.912 24 H 0.137 0.863 25 H 0.109 0.891 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.058 0.942 29 H 0.088 0.912 30 H 0.134 0.866 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.813 0.571 1.536 6.040 hybrid contribution 0.542 -0.709 0.004 0.893 sum -5.271 -0.138 1.540 5.493 Atomic orbital electron populations 1.20209 0.89769 1.01941 1.01451 1.19882 0.92204 0.86163 1.11481 1.20145 0.92216 0.96022 1.12651 1.17804 0.92709 0.92425 1.16811 1.19659 0.90848 0.96755 1.01708 1.19520 0.93499 0.94225 1.09873 1.20469 0.96213 0.97931 0.99886 1.17085 0.92454 0.89611 0.88602 1.19417 0.95930 0.98240 1.34888 0.90235 1.25876 0.97215 0.98324 0.92850 1.69879 1.31843 1.17568 1.22737 0.86423 0.81861 0.78988 0.79748 1.18959 1.20514 1.19047 1.20052 0.88032 0.98997 1.15836 1.18382 0.83510 0.93419 1.02080 1.43528 1.04720 1.04219 1.65546 1.21595 0.99700 0.82042 1.01680 0.92127 0.92688 0.91158 0.86272 0.89129 0.93762 0.91791 0.94205 0.91184 0.86556 0.92653 0.90744 0.91629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.08 10.05 36.01 0.36 -0.71 16 2 C 0.01 0.15 6.85 -81.69 -0.56 -0.41 16 3 C -0.18 -3.92 10.72 -39.55 -0.42 -4.35 16 4 C -0.19 -4.77 6.19 -106.65 -0.66 -5.43 16 5 C -0.07 -1.69 9.65 -39.62 -0.38 -2.07 16 6 C -0.17 -4.21 5.89 -104.37 -0.61 -4.83 16 7 C -0.09 -1.84 9.36 36.01 0.34 -1.50 16 8 C 0.13 3.41 5.57 -106.80 -0.59 2.82 16 9 C -0.45 -11.98 8.08 -37.91 -0.31 -12.29 16 10 H 0.08 1.99 6.85 -52.49 -0.36 1.63 16 11 C 0.07 1.87 5.17 -17.34 -0.09 1.78 16 12 N -0.79 -20.75 10.89 55.54 0.60 -20.14 16 13 Si 0.91 18.75 29.59 -169.99 -5.03 13.72 16 14 H -0.26 -5.46 7.11 56.52 0.40 -5.05 16 15 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 16 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 17 C -0.21 -5.56 8.60 -38.71 -0.33 -5.89 16 18 C 0.13 3.29 6.81 -83.95 -0.57 2.72 16 19 N -0.49 -10.63 3.20 -117.11 -0.37 -11.00 16 20 C 0.09 1.58 10.86 59.85 0.65 2.23 16 21 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 22 H 0.05 0.69 6.98 -51.93 -0.36 0.33 16 23 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.12 2.20 8.06 -52.48 -0.42 1.78 16 25 H 0.09 1.91 8.06 -52.48 -0.42 1.49 16 26 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.06 1.35 6.76 -51.93 -0.35 1.00 16 28 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 29 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 30 H 0.12 3.22 6.15 -52.49 -0.32 2.90 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 1.29 8.13 -51.93 -0.42 0.87 16 33 H 0.07 0.90 6.95 -51.93 -0.36 0.54 16 LS Contribution 275.66 15.07 4.15 4.15 Total: -1.00 -29.57 275.66 -8.10 -37.67 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -4.27 Total: 3.52 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: -3.19 Total: -27.93 kcal Atomic # 7 Polarization: -31.38 SS G_CDS: 0.23 Total: -31.15 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.57 -8.10 -37.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260856429.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.522 kcal (2) G-P(sol) polarization free energy of solvation -29.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds