Wall clock time and date at job start Mon Mar 30 2020 20:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47165 * 2 1 4 4 C 1.50699 * 109.47450 * 239.99835 * 2 1 3 5 5 H 1.07997 * 120.00125 * 240.00650 * 4 2 1 6 6 C 1.37881 * 119.99589 * 59.99639 * 4 2 1 7 7 N 1.31509 * 120.00151 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99468 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47459 * 90.00618 * 8 6 4 10 10 H 1.48510 * 109.46933 * 210.00286 * 8 6 4 11 11 H 1.48499 * 109.47256 * 329.99817 * 8 6 4 12 12 N 1.46907 * 109.47093 * 119.99691 * 2 1 3 13 13 C 1.46894 * 110.99994 * 205.76807 * 12 2 1 14 14 H 1.08997 * 109.47634 * 325.24550 * 13 12 2 15 15 C 1.53006 * 109.47180 * 85.24278 * 13 12 2 16 16 O 1.42896 * 109.46916 * 63.73582 * 15 13 12 17 17 C 1.52998 * 109.47203 * 205.24002 * 13 12 2 18 18 H 1.08998 * 109.82313 * 180.56569 * 17 13 12 19 19 C 1.54380 * 109.82708 * 59.58939 * 17 13 12 20 20 C 1.55310 * 102.25206 * 219.12945 * 19 17 13 21 21 C 1.54946 * 100.94118 * 34.13276 * 20 19 17 22 22 O 1.43237 * 109.83067 * 301.45761 * 17 13 12 23 23 H 1.09000 * 109.47360 * 174.25960 * 1 2 3 24 24 H 1.08999 * 109.47537 * 294.25587 * 1 2 3 25 25 H 1.08995 * 109.47394 * 54.25608 * 1 2 3 26 26 H 0.97005 * 119.99927 * 180.02562 * 7 6 4 27 27 H 1.00901 * 110.99664 * 329.72285 * 12 2 1 28 28 H 1.09000 * 109.47374 * 183.73787 * 15 13 12 29 29 H 1.09005 * 109.46555 * 303.73831 * 15 13 12 30 30 H 0.96700 * 114.00163 * 180.02562 * 16 15 13 31 31 H 1.08997 * 110.85110 * 337.31810 * 19 17 13 32 32 H 1.09003 * 110.84580 * 100.94265 * 19 17 13 33 33 H 1.09007 * 111.12173 * 276.21318 * 20 19 17 34 34 H 1.09000 * 111.15907 * 152.06879 * 20 19 17 35 35 H 1.08993 * 110.30704 * 204.63885 * 21 20 19 36 36 H 1.09001 * 110.30362 * 82.46961 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0078 9 1 1.3428 -2.1618 -4.4118 10 1 2.4866 -0.1414 -5.1122 11 1 3.6294 -1.7583 -3.7120 12 7 2.0196 -0.6925 1.1995 13 6 3.3595 -0.2185 1.5709 14 1 3.9252 0.0152 0.6690 15 6 3.2347 1.0384 2.4345 16 8 2.5691 0.7126 3.6563 17 6 4.0858 -1.3094 2.3603 18 1 5.0774 -0.9598 2.6475 19 6 4.2072 -2.5855 1.4999 20 6 3.9551 -3.7101 2.5408 21 6 2.9251 -3.0230 3.4725 22 8 3.3315 -1.6465 3.5303 23 1 -0.3634 -1.0225 -0.1028 24 1 -0.3634 0.4222 0.9369 25 1 -0.3634 0.6003 -0.8340 26 1 0.7088 1.1613 -3.4844 27 1 1.3732 -0.5871 1.9670 28 1 4.2285 1.4281 2.6548 29 1 2.6595 1.7926 1.8973 30 1 2.4546 1.4639 4.2543 31 1 3.4461 -2.6013 0.7198 32 1 5.2057 -2.6706 1.0710 33 1 4.8691 -3.9579 3.0806 34 1 3.5286 -4.5950 2.0685 35 1 2.9574 -3.4692 4.4664 36 1 1.9224 -3.1042 3.0528 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389221261.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:52:48 Heat of formation + Delta-G solvation = -118.809952 kcal Electronic energy + Delta-G solvation = -17339.277572 eV Core-core repulsion = 14629.411806 eV Total energy + Delta-G solvation = -2709.865766 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 229.146 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.50133 -38.16486 -36.70121 -34.42956 -32.72575 -32.10451 -29.13998 -27.65683 -27.21650 -23.94756 -22.34013 -22.09875 -20.92186 -18.49729 -18.05574 -17.39566 -16.85793 -16.60997 -15.86307 -15.66518 -15.26863 -14.79077 -14.64774 -14.10714 -13.92575 -13.34922 -13.05012 -12.94373 -12.78362 -12.54624 -12.37014 -12.28496 -12.01348 -11.85527 -11.78722 -11.69239 -11.44081 -11.05845 -10.77670 -10.48940 -10.10054 -8.83220 -8.05656 -6.16182 1.42313 1.43533 1.53215 2.44969 3.16130 3.21430 3.40065 3.79015 3.92020 4.02769 4.20064 4.32033 4.43269 4.51764 4.52550 4.71408 4.78325 4.91148 4.92859 4.98721 5.06509 5.09869 5.14973 5.17739 5.24633 5.51333 5.58055 5.74223 5.89316 6.35358 6.42543 6.57258 6.98159 7.00730 7.07292 7.53284 8.99273 Molecular weight = 229.15amu Principal moments of inertia in cm(-1) A = 0.027434 B = 0.009069 C = 0.007696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.400405 B = 3086.584092 C = 3637.184779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.216 3.784 3 H -0.030 1.030 4 C -0.501 4.501 5 H 0.056 0.944 6 C 0.007 3.993 7 N -0.925 5.925 8 Si 0.955 3.045 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.268 1.268 12 N -0.663 5.663 13 C 0.078 3.922 14 H 0.076 0.924 15 C 0.058 3.942 16 O -0.557 6.557 17 C 0.103 3.897 18 H 0.079 0.921 19 C -0.148 4.148 20 C -0.144 4.144 21 C 0.050 3.950 22 O -0.366 6.366 23 H 0.030 0.970 24 H 0.024 0.976 25 H 0.059 0.941 26 H 0.259 0.741 27 H 0.329 0.671 28 H 0.057 0.943 29 H 0.023 0.977 30 H 0.382 0.618 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.352 -4.011 10.521 12.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.108 3.892 3 H -0.013 1.013 4 C -0.540 4.540 5 H 0.074 0.926 6 C -0.191 4.191 7 N -0.565 5.565 8 Si 0.782 3.218 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.192 1.192 12 N -0.293 5.293 13 C -0.033 4.033 14 H 0.095 0.905 15 C -0.022 4.022 16 O -0.362 6.362 17 C 0.045 3.955 18 H 0.097 0.903 19 C -0.186 4.186 20 C -0.181 4.181 21 C -0.027 4.027 22 O -0.285 6.285 23 H 0.049 0.951 24 H 0.043 0.957 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.147 0.853 28 H 0.075 0.925 29 H 0.041 0.959 30 H 0.229 0.771 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 6.455 -4.898 9.920 12.809 hybrid contribution -0.191 1.315 -0.791 1.546 sum 6.264 -3.583 9.130 11.637 Atomic orbital electron populations 1.21735 0.98273 0.99638 0.98956 1.18969 0.91502 0.90490 0.88236 1.01281 1.21431 1.30191 1.11707 0.90692 0.92593 1.25705 0.95729 0.95840 1.01807 1.70028 1.38373 1.24392 1.23743 0.85595 0.78857 0.78180 0.79195 1.20524 1.21248 1.19225 1.60486 1.02714 1.59626 1.06521 1.22032 0.92912 0.92747 0.95601 0.90548 1.22664 0.96067 0.97071 0.86353 1.86652 1.80749 1.39046 1.29775 1.22584 0.93202 0.94604 0.85147 0.90311 1.23092 1.02658 0.93790 0.99072 1.23174 0.99861 0.98303 0.96767 1.23347 0.97242 0.82208 0.99870 1.88511 1.72874 1.26984 1.40087 0.95129 0.95685 0.92260 0.93219 0.85305 0.92459 0.95902 0.77053 0.90943 0.90248 0.89546 0.89850 0.89075 0.93937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.37 8.92 71.98 0.64 -5.73 16 2 C 0.22 11.00 2.41 44.17 0.11 11.10 16 3 H -0.03 -1.70 7.12 -2.38 -0.02 -1.71 16 4 C -0.50 -27.52 8.54 25.60 0.22 -27.30 16 5 H 0.06 3.07 7.26 -2.91 -0.02 3.05 16 6 C 0.01 0.38 5.30 84.66 0.45 0.83 16 7 N -0.92 -53.57 11.38 21.45 0.24 -53.32 16 8 Si 0.96 43.96 29.54 68.60 2.03 45.98 16 9 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 10 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 11 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 12 N -0.66 -28.51 4.96 -473.31 -2.35 -30.86 16 13 C 0.08 2.95 2.12 44.92 0.10 3.05 16 14 H 0.08 3.18 7.66 -2.39 -0.02 3.16 16 15 C 0.06 1.93 6.69 71.98 0.48 2.41 16 16 O -0.56 -17.37 10.87 -127.76 -1.39 -18.76 16 17 C 0.10 3.36 3.33 31.06 0.10 3.46 16 18 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 19 C -0.15 -4.63 6.43 31.86 0.20 -4.43 16 20 C -0.14 -3.65 7.16 32.05 0.23 -3.42 16 21 C 0.05 1.42 7.78 72.65 0.56 1.99 16 22 O -0.37 -12.22 8.83 -127.76 -1.13 -13.35 16 23 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.02 1.10 8.01 -2.39 -0.02 1.08 16 25 H 0.06 3.24 6.25 -2.39 -0.01 3.22 16 26 H 0.26 14.33 8.31 -92.70 -0.77 13.56 16 27 H 0.33 14.19 7.42 -89.69 -0.67 13.53 16 28 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.02 0.83 7.42 -2.38 -0.02 0.81 16 30 H 0.38 8.24 9.12 -74.06 -0.68 7.56 16 31 H 0.07 2.80 6.61 -2.39 -0.02 2.78 16 32 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 34 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -62.20 285.86 0.23 -61.96 By element: Atomic # 1 Polarization: 26.64 SS G_CDS: -0.27 Total: 26.37 kcal Atomic # 6 Polarization: -21.12 SS G_CDS: 3.10 Total: -18.03 kcal Atomic # 7 Polarization: -82.08 SS G_CDS: -2.10 Total: -84.18 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -2.52 Total: -32.11 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.98 kcal Total: -62.20 0.23 -61.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389221261.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.847 kcal (2) G-P(sol) polarization free energy of solvation -62.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds