Wall clock time and date at job start Mon Mar 30 2020 20:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30504 * 125.64988 * 2 1 4 4 C 1.34121 * 109.25569 * 180.02562 * 3 2 1 5 5 C 1.34666 * 108.02399 * 359.97438 * 4 3 2 6 6 S 1.76196 * 126.59637 * 179.97438 * 5 4 3 7 7 O 1.42108 * 106.40036 * 23.56501 * 6 5 4 8 8 O 1.42094 * 106.40638 * 156.48549 * 6 5 4 9 9 N 1.65598 * 107.22096 * 270.02811 * 6 5 4 10 10 C 1.36944 * 119.99985 * 64.99555 * 9 6 5 11 11 H 1.07997 * 120.00087 * 0.02562 * 10 9 6 12 12 C 1.38811 * 119.99930 * 180.02562 * 10 9 6 13 13 N 1.31623 * 119.99742 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 119.99774 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47133 * 60.00219 * 14 12 10 16 16 H 1.48507 * 109.47016 * 180.02562 * 14 12 10 17 17 H 1.48495 * 109.47576 * 299.99951 * 14 12 10 18 18 N 1.35039 * 125.64978 * 180.02562 * 2 1 3 19 19 H 0.97003 * 126.39946 * 359.97438 * 18 2 1 20 20 H 1.08995 * 109.47688 * 89.97453 * 1 2 3 21 21 H 1.08997 * 109.47246 * 209.98128 * 1 2 3 22 22 H 1.09007 * 109.47128 * 329.97840 * 1 2 3 23 23 H 1.08001 * 125.99017 * 179.97438 * 4 3 2 24 24 H 0.96999 * 120.00235 * 244.99825 * 9 6 5 25 25 H 0.97004 * 119.99730 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0605 0.0000 4 6 3.5543 0.6819 -0.0006 5 6 3.5926 -0.6642 -0.0004 6 16 5.0365 -1.6740 -0.0015 7 8 6.0819 -0.8798 0.5424 8 8 4.6496 -2.9281 0.5429 9 7 5.4372 -1.9546 -1.5836 10 6 5.8264 -0.9154 -2.3861 11 1 5.8724 0.0871 -1.9870 12 6 6.1618 -1.1505 -3.7124 13 7 6.1053 -2.3723 -4.1988 14 14 6.6920 0.2671 -4.8071 15 1 7.9061 0.9050 -4.2377 16 1 6.9931 -0.2445 -6.1684 17 1 5.5977 1.2679 -4.8858 18 7 2.2940 -1.0973 -0.0005 19 1 1.9951 -2.0201 -0.0006 20 1 -0.3634 0.0005 -1.0276 21 1 -0.3633 -0.8901 0.5135 22 1 -0.3634 0.8898 0.5142 23 1 4.4098 1.3411 -0.0011 24 1 5.3963 -2.8550 -1.9419 25 1 6.3393 -2.5366 -5.1257 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069949396.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:53:20 Heat of formation + Delta-G solvation = -51.578778 kcal Electronic energy + Delta-G solvation = -14252.629306 eV Core-core repulsion = 11585.913763 eV Total energy + Delta-G solvation = -2666.715543 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 231.046 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.09313 -38.11450 -36.77036 -36.51503 -33.67842 -32.89416 -32.79125 -28.18025 -26.45809 -23.23635 -21.93505 -20.55511 -20.10737 -19.29177 -18.30996 -16.88533 -16.57272 -16.44911 -16.11122 -15.38832 -15.04922 -14.40903 -13.86691 -13.60724 -13.37483 -13.16893 -13.07037 -13.04561 -12.89278 -12.61536 -12.35525 -12.01625 -11.87404 -11.25888 -11.20937 -10.23537 -9.84294 -8.35869 -5.90749 -0.38632 0.49598 1.49679 1.52935 1.58952 1.85165 2.00966 2.32925 2.65224 2.89405 3.19814 3.41501 3.68500 4.06677 4.27836 4.63595 4.70143 4.85037 5.03124 5.08599 5.45672 5.58428 6.29454 6.71590 6.76575 6.90026 7.28416 8.81636 Molecular weight = 231.05amu Principal moments of inertia in cm(-1) A = 0.026380 B = 0.010289 C = 0.008697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.139605 B = 2720.741993 C = 3218.645795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.243 3.757 3 N -0.530 5.530 4 C 0.078 3.922 5 C -0.594 4.594 6 S 2.692 3.308 7 O -0.981 6.981 8 O -1.009 7.009 9 N -0.964 5.964 10 C -0.309 4.309 11 H 0.109 0.891 12 C -0.013 4.013 13 N -0.922 5.922 14 Si 0.982 3.018 15 H -0.265 1.265 16 H -0.280 1.280 17 H -0.267 1.267 18 N -0.513 5.513 19 H 0.436 0.564 20 H 0.102 0.898 21 H 0.106 0.894 22 H 0.104 0.896 23 H 0.186 0.814 24 H 0.408 0.592 25 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.927 2.642 4.085 11.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.023 4.023 3 N -0.252 5.252 4 C -0.076 4.076 5 C -0.790 4.790 6 S 2.780 3.220 7 O -0.971 6.971 8 O -0.999 6.999 9 N -0.717 5.717 10 C -0.445 4.445 11 H 0.127 0.873 12 C -0.216 4.216 13 N -0.564 5.564 14 Si 0.805 3.195 15 H -0.190 1.190 16 H -0.206 1.206 17 H -0.192 1.192 18 N -0.117 5.117 19 H 0.277 0.723 20 H 0.120 0.880 21 H 0.125 0.875 22 H 0.123 0.877 23 H 0.203 0.797 24 H 0.243 0.757 25 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.789 3.230 4.840 11.388 hybrid contribution 0.131 -0.743 -1.116 1.347 sum -9.658 2.486 3.724 10.645 Atomic orbital electron populations 1.20569 0.80355 1.06316 1.05630 1.24834 0.97951 0.81276 0.98242 1.70294 1.02023 1.29865 1.22988 1.22555 0.95873 0.91691 0.97492 1.34374 1.06061 1.11475 1.27059 1.02911 0.73758 0.71855 0.73517 1.93493 1.53328 1.71964 1.78326 1.93412 1.84432 1.43012 1.79028 1.51425 1.74410 1.15224 1.30652 1.19497 1.41784 0.89765 0.93473 0.87341 1.25982 0.97898 0.99586 0.98121 1.69774 1.49037 1.21190 1.16427 0.85151 0.79233 0.77900 0.77194 1.18989 1.20553 1.19188 1.42839 1.03734 1.10992 1.54124 0.72292 0.87987 0.87502 0.87742 0.79650 0.75710 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.15 10.51 71.24 0.75 -0.40 15 2 C 0.24 7.13 8.15 138.13 1.13 8.25 15 3 N -0.53 -19.05 11.25 -188.14 -2.12 -21.17 15 4 C 0.08 3.02 11.64 83.52 0.97 3.99 15 5 C -0.59 -22.83 7.19 83.08 0.60 -22.24 15 6 S 2.69 115.38 5.86 -56.49 -0.33 115.04 15 7 O -0.98 -46.65 17.57 -128.00 -2.25 -48.89 15 8 O -1.01 -44.50 18.02 -128.00 -2.31 -46.81 15 9 N -0.96 -45.91 5.75 -54.26 -0.31 -46.22 15 10 C -0.31 -15.66 9.63 84.03 0.81 -14.85 15 11 H 0.11 5.23 7.82 -2.91 -0.02 5.20 15 12 C -0.01 -0.68 5.50 84.86 0.47 -0.21 15 13 N -0.92 -49.32 13.06 21.65 0.28 -49.03 15 14 Si 0.98 40.49 29.55 68.60 2.03 42.51 15 15 H -0.27 -10.64 7.11 99.48 0.71 -9.93 15 16 H -0.28 -11.34 7.11 99.48 0.71 -10.63 15 17 H -0.27 -10.66 7.11 99.48 0.71 -9.95 15 18 N -0.51 -16.15 6.15 -183.80 -1.13 -17.28 15 19 H 0.44 11.10 8.96 -92.71 -0.83 10.26 15 20 H 0.10 1.41 8.14 -2.39 -0.02 1.39 15 21 H 0.11 1.13 8.14 -2.39 -0.02 1.11 15 22 H 0.10 1.51 8.14 -2.38 -0.02 1.49 15 23 H 0.19 6.69 8.06 -2.91 -0.02 6.67 15 24 H 0.41 19.83 8.02 -96.75 -0.78 19.06 15 25 H 0.27 13.88 8.31 -92.71 -0.77 13.11 15 Total: -1.00 -67.75 246.75 -1.78 -69.52 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: -0.36 Total: 27.78 kcal Atomic # 6 Polarization: -30.18 SS G_CDS: 4.72 Total: -25.46 kcal Atomic # 7 Polarization: -130.43 SS G_CDS: -3.28 Total: -133.71 kcal Atomic # 8 Polarization: -91.15 SS G_CDS: -4.55 Total: -95.70 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.51 kcal Atomic # 16 Polarization: 115.38 SS G_CDS: -0.33 Total: 115.04 kcal Total: -67.75 -1.78 -69.52 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069949396.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.945 kcal (2) G-P(sol) polarization free energy of solvation -67.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds