Wall clock time and date at job start Mon Mar 30 2020 20:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31572 * 1 3 3 Si 1.86793 * 120.00152 * 2 1 4 4 H 1.48497 * 109.47548 * 269.99662 * 3 2 1 5 5 H 1.48503 * 109.47441 * 30.00208 * 3 2 1 6 6 H 1.48500 * 109.47031 * 149.99870 * 3 2 1 7 7 C 1.38640 * 119.99773 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00221 * 180.02562 * 7 2 1 9 9 O 1.34823 * 119.99767 * 0.02562 * 7 2 1 10 10 C 1.35790 * 116.99483 * 185.06143 * 9 7 2 11 11 C 1.38799 * 120.02236 * 354.39716 * 10 9 7 12 12 C 1.38668 * 119.89800 * 179.73947 * 11 10 9 13 13 N 1.39892 * 120.03561 * 180.27383 * 12 11 10 14 14 C 1.39167 * 119.92941 * 0.53487 * 12 11 10 15 15 F 1.35095 * 119.97976 * 179.76229 * 14 12 11 16 16 C 1.38307 * 120.03494 * 359.48745 * 14 12 11 17 17 C 1.38292 * 120.10292 * 0.23401 * 16 14 12 18 18 Cl 1.73599 * 119.96581 * 180.02562 * 17 16 14 19 19 H 0.97003 * 119.99811 * 0.02562 * 1 2 3 20 20 H 1.08005 * 120.04806 * 0.02562 * 11 10 9 21 21 H 0.97001 * 120.00437 * 180.25257 * 13 12 11 22 22 H 0.97006 * 119.99765 * 0.26631 * 13 12 11 23 23 H 1.07998 * 119.94081 * 180.25618 * 16 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 2.4974 2.0464 -1.4000 5 1 1.4473 2.6527 0.7001 6 1 3.5473 1.4400 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2008 0.0010 9 8 1.3347 -2.3682 0.0005 10 6 2.0701 -3.5047 0.1078 11 6 3.4565 -3.4386 0.0940 12 6 4.2050 -4.6002 0.2091 13 7 5.6024 -4.5364 0.2013 14 6 3.5645 -5.8301 0.3271 15 9 4.2928 -6.9629 0.4345 16 6 2.1830 -5.8927 0.3401 17 6 1.4351 -4.7346 0.2311 18 17 -0.2989 -4.8173 0.2486 19 1 -0.4850 0.8401 -0.0004 20 1 3.9514 -2.4834 -0.0017 21 1 6.1256 -5.3496 0.2782 22 1 6.0483 -3.6788 0.1191 23 1 1.6876 -6.8476 0.4359 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000150030235.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:54:01 Heat of formation + Delta-G solvation = -57.604236 kcal Electronic energy + Delta-G solvation = -13614.021666 eV Core-core repulsion = 10789.248077 eV Total energy + Delta-G solvation = -2824.773589 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 231.020 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.11535 -39.15085 -36.77020 -35.63404 -33.61628 -32.33295 -29.00377 -27.75375 -25.39969 -22.30375 -21.37749 -18.46127 -17.55096 -16.95829 -16.04152 -15.40253 -15.02144 -14.74557 -14.43353 -13.78183 -13.61229 -13.32332 -12.71356 -11.94558 -11.85485 -11.70416 -11.38336 -11.07726 -11.00188 -10.55638 -10.04101 -9.64383 -9.45003 -8.88806 -7.65870 -6.90428 -6.56469 -4.15310 1.89908 2.08579 3.05908 3.07003 3.09689 3.12350 3.85411 4.13564 4.25232 4.92647 5.00238 5.09431 5.42949 5.90686 6.24310 6.32798 6.47222 6.69138 6.84710 7.15611 7.31206 7.79387 7.85461 8.02459 8.86538 9.50827 10.59415 Molecular weight = 231.02amu Principal moments of inertia in cm(-1) A = 0.027187 B = 0.009410 C = 0.007013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.638180 B = 2974.693382 C = 3991.752633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.044 3.956 3 Si 0.943 3.057 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.396 4.396 8 H 0.095 0.905 9 O -0.148 6.148 10 C 0.190 3.810 11 C -0.283 4.283 12 C 0.238 3.762 13 N -0.876 5.876 14 C -0.072 4.072 15 F -0.157 7.157 16 C -0.054 4.054 17 C -0.130 4.130 18 Cl -0.074 7.074 19 H 0.273 0.727 20 H 0.142 0.858 21 H 0.396 0.604 22 H 0.399 0.601 23 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.855 -5.680 0.394 8.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.163 4.163 3 Si 0.768 3.232 4 H -0.198 1.198 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.471 4.471 8 H 0.112 0.888 9 O -0.049 6.049 10 C 0.132 3.868 11 C -0.308 4.308 12 C 0.133 3.867 13 N -0.416 5.416 14 C -0.096 4.096 15 F -0.137 7.137 16 C -0.075 4.075 17 C -0.159 4.159 18 Cl -0.046 7.046 19 H 0.083 0.917 20 H 0.160 0.840 21 H 0.224 0.776 22 H 0.227 0.773 23 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.203 -5.478 0.380 8.284 hybrid contribution 0.882 0.611 0.011 1.073 sum 7.085 -4.867 0.390 8.605 Atomic orbital electron populations 1.70064 1.05987 1.28023 1.43951 1.25343 0.95871 0.98941 0.96121 0.85680 0.78938 0.79828 0.78802 1.19756 1.20114 1.19120 1.21388 0.91908 0.80598 1.53233 0.88787 1.84069 1.33714 1.11185 1.75898 1.18674 0.89322 0.87257 0.91587 1.20295 0.92726 0.97280 1.20487 1.17468 0.84076 0.92106 0.93079 1.42317 1.03045 1.11333 1.84901 1.16397 0.88554 0.80548 1.24114 1.91326 1.77390 1.49294 1.95647 1.20236 0.91162 0.97314 0.98755 1.19365 0.84329 0.91866 1.20349 1.98300 1.10046 1.98596 1.97632 0.91718 0.84049 0.77565 0.77307 0.84870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.93 13.67 55.48 0.76 -23.18 14 2 C 0.04 1.15 5.49 -17.51 -0.10 1.05 14 3 Si 0.94 19.55 29.55 -169.99 -5.02 14.53 14 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 14 5 H -0.28 -5.64 7.11 56.52 0.40 -5.24 14 6 H -0.27 -5.29 7.11 56.52 0.40 -4.89 14 7 C -0.40 -10.50 9.49 30.88 0.29 -10.20 14 8 H 0.09 2.27 5.20 -52.49 -0.27 2.00 14 9 O -0.15 -4.04 9.21 -0.06 0.00 -4.04 14 10 C 0.19 4.45 6.64 -39.10 -0.26 4.19 14 11 C -0.28 -5.85 9.01 -39.21 -0.35 -6.21 14 12 C 0.24 4.33 6.76 -83.68 -0.57 3.76 14 13 N -0.88 -12.18 9.10 32.46 0.30 -11.88 14 14 C -0.07 -1.33 7.31 -39.21 -0.29 -1.62 14 15 F -0.16 -2.72 16.63 2.25 0.04 -2.68 14 16 C -0.05 -1.02 9.79 -39.54 -0.39 -1.41 14 17 C -0.13 -2.78 6.34 -39.29 -0.25 -3.02 14 18 Cl -0.07 -1.54 28.50 -51.86 -1.48 -3.02 14 19 H 0.27 7.06 8.31 -40.82 -0.34 6.72 14 20 H 0.14 2.84 5.64 -52.48 -0.30 2.54 14 21 H 0.40 4.80 8.31 -40.82 -0.34 4.46 14 22 H 0.40 4.71 8.84 -40.82 -0.36 4.35 14 23 H 0.13 2.16 8.06 -52.49 -0.42 1.73 14 LS Contribution 233.17 15.07 3.51 3.51 Total: -1.00 -29.02 233.17 -4.63 -33.65 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -0.83 Total: 6.57 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -1.90 Total: -13.46 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: 1.05 Total: -35.06 kcal Atomic # 8 Polarization: -4.04 SS G_CDS: 0.00 Total: -4.04 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.04 Total: -2.68 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -5.02 Total: 14.53 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -1.48 Total: -3.02 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -29.02 -4.63 -33.65 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150030235.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.958 kcal (2) G-P(sol) polarization free energy of solvation -29.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds