Wall clock time and date at job start Mon Mar 30 2020 20:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30929 * 1 3 3 Si 1.86808 * 119.99975 * 2 1 4 4 H 1.48495 * 109.47064 * 85.28614 * 3 2 1 5 5 H 1.48503 * 109.46842 * 205.28932 * 3 2 1 6 6 H 1.48505 * 109.46894 * 325.28751 * 3 2 1 7 7 C 1.39876 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00114 * 22.33277 * 7 2 1 9 9 C 1.41024 * 119.99626 * 202.33727 * 7 2 1 10 10 C 1.41518 * 120.63122 * 40.85731 * 9 7 2 11 11 O 1.35389 * 119.90448 * 359.97438 * 10 9 7 12 12 N 1.32034 * 120.19113 * 179.69958 * 10 9 7 13 13 C 1.32521 * 121.67739 * 0.58511 * 12 10 9 14 14 O 1.35491 * 119.36088 * 179.71811 * 13 12 10 15 15 C 1.39409 * 121.28421 * 359.69760 * 13 12 10 16 16 C 1.36752 * 119.65881 * 359.97438 * 15 13 12 17 17 C 1.50701 * 120.77921 * 179.97438 * 16 15 13 18 18 F 1.39905 * 109.46421 * 120.02507 * 17 16 15 19 19 F 1.39895 * 109.47291 * 240.02036 * 17 16 15 20 20 H 0.96997 * 119.99858 * 359.97438 * 1 2 3 21 21 H 0.96709 * 114.00177 * 95.21084 * 11 10 9 22 22 H 0.96697 * 114.00253 * 269.98269 * 14 13 12 23 23 H 1.07998 * 120.17538 * 179.97438 * 15 13 12 24 24 H 1.08998 * 109.47263 * 0.02895 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3093 0.0000 0.0000 3 14 2.2433 1.6178 0.0000 4 1 2.3912 2.1040 1.3953 5 1 3.5871 1.4135 -0.5981 6 1 1.4941 2.6219 -0.7973 7 6 2.0087 -1.2114 0.0005 8 1 1.5295 -2.1117 -0.3545 9 6 3.3395 -1.2569 0.4647 10 6 3.7278 -0.5274 1.6136 11 8 2.8166 0.2232 2.2764 12 7 4.9749 -0.5810 2.0440 13 6 5.8966 -1.2993 1.4190 14 8 7.1637 -1.3162 1.8985 15 6 5.5877 -2.0384 0.2781 16 6 4.3105 -2.0267 -0.2106 17 6 3.9489 -2.8158 -1.4425 18 9 2.9557 -3.7483 -1.1239 19 9 3.4729 -1.9468 -2.4300 20 1 -0.4850 0.8400 0.0004 21 1 2.4077 -0.2274 3.0280 22 1 7.7320 -0.6248 1.5324 23 1 6.3530 -2.6174 -0.2174 24 1 4.8317 -3.3374 -1.8121 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238666677.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:54:24 Heat of formation + Delta-G solvation = -179.585481 kcal Electronic energy + Delta-G solvation = -16478.739841 eV Core-core repulsion = 13220.340373 eV Total energy + Delta-G solvation = -3258.399468 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.049 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.68369 -47.69046 -41.15410 -38.69305 -36.93751 -35.61134 -33.77473 -31.50439 -27.91240 -26.40491 -23.80476 -22.70906 -19.96183 -19.84566 -18.92968 -18.44946 -17.93053 -17.25287 -16.98690 -16.83690 -15.84322 -15.76638 -15.23823 -14.96044 -14.54580 -14.09268 -13.72141 -13.42585 -13.24099 -13.03097 -12.85452 -12.31962 -12.17639 -11.97488 -11.64816 -11.15652 -10.64203 -10.20982 -9.49393 -8.99213 -6.63184 0.27036 0.30385 1.28183 1.40445 1.45928 2.18187 2.39197 2.75745 2.97283 3.18896 3.45003 3.62809 4.11258 4.29736 4.33723 4.52458 4.79170 4.95774 5.15850 5.27583 5.65075 6.03221 6.24485 6.57272 6.84195 7.02147 7.25660 8.03390 Molecular weight = 231.05amu Principal moments of inertia in cm(-1) A = 0.021392 B = 0.016248 C = 0.010870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.555957 B = 1722.874307 C = 2575.376128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.083 3.917 3 Si 0.960 3.040 4 H -0.235 1.235 5 H -0.284 1.284 6 H -0.277 1.277 7 C -0.450 4.450 8 H 0.078 0.922 9 C 0.036 3.964 10 C 0.193 3.807 11 O -0.471 6.471 12 N -0.504 5.504 13 C 0.180 3.820 14 O -0.484 6.484 15 C -0.094 4.094 16 C -0.230 4.230 17 C 0.330 3.670 18 F -0.218 7.218 19 F -0.214 7.214 20 H 0.298 0.702 21 H 0.384 0.616 22 H 0.399 0.601 23 H 0.172 0.828 24 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.277 -1.617 -1.975 8.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.137 4.137 3 Si 0.786 3.214 4 H -0.160 1.160 5 H -0.209 1.209 6 H -0.204 1.204 7 C -0.478 4.478 8 H 0.096 0.904 9 C 0.029 3.971 10 C 0.010 3.990 11 O -0.278 6.278 12 N -0.233 5.233 13 C 0.003 3.997 14 O -0.290 6.290 15 C -0.115 4.115 16 C -0.238 4.238 17 C 0.277 3.723 18 F -0.199 7.199 19 F -0.195 7.195 20 H 0.109 0.891 21 H 0.242 0.758 22 H 0.256 0.744 23 H 0.190 0.810 24 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 8.131 -1.147 -1.363 8.324 hybrid contribution -0.470 0.332 -0.425 0.715 sum 7.661 -0.814 -1.788 7.909 Atomic orbital electron populations 1.69753 1.09041 1.31912 1.33357 1.26534 0.94898 1.03285 0.88989 0.85472 0.78158 0.77893 0.79896 1.15970 1.20925 1.20360 1.19239 0.94953 0.96777 1.36828 0.90434 1.18552 0.94012 0.91811 0.92683 1.18896 0.86008 1.01160 0.92954 1.85012 1.54053 1.41042 1.47724 1.66123 1.03238 1.18962 1.34945 1.18410 0.85572 1.00982 0.94713 1.84741 1.17187 1.56638 1.70481 1.21493 0.96272 0.99299 0.94450 1.20663 0.94226 1.08973 0.99959 1.20518 0.87768 0.80510 0.83490 1.92928 1.66789 1.66605 1.93622 1.92945 1.90795 1.72278 1.63493 0.89122 0.75821 0.74441 0.81042 0.81924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.67 13.93 21.82 0.30 -42.37 14 2 C 0.08 4.30 4.85 85.22 0.41 4.71 14 3 Si 0.96 44.48 24.74 68.60 1.70 46.18 14 4 H -0.23 -10.75 6.04 99.48 0.60 -10.15 14 5 H -0.28 -13.94 7.11 99.48 0.71 -13.24 14 6 H -0.28 -11.95 7.11 99.48 0.71 -11.25 14 7 C -0.45 -23.90 8.01 23.35 0.19 -23.71 14 8 H 0.08 4.46 6.78 -2.91 -0.02 4.45 14 9 C 0.04 1.75 4.74 -21.08 -0.10 1.65 14 10 C 0.19 9.22 6.32 85.47 0.54 9.76 14 11 O -0.47 -21.35 8.48 -86.82 -0.74 -22.08 14 12 N -0.50 -23.09 10.40 -419.95 -4.37 -27.45 14 13 C 0.18 7.11 7.74 84.87 0.66 7.76 14 14 O -0.48 -15.64 13.54 -87.91 -1.19 -16.83 14 15 C -0.09 -3.33 9.60 22.20 0.21 -3.11 14 16 C -0.23 -9.51 5.41 -19.50 -0.11 -9.61 14 17 C 0.33 11.90 5.06 71.24 0.36 12.27 14 18 F -0.22 -8.90 15.88 44.97 0.71 -8.18 14 19 F -0.21 -8.83 16.66 44.97 0.75 -8.08 14 20 H 0.30 14.06 8.30 -92.71 -0.77 13.29 14 21 H 0.38 14.40 9.06 -74.05 -0.67 13.73 14 22 H 0.40 8.74 9.06 -74.06 -0.67 8.07 14 23 H 0.17 4.24 7.97 -2.91 -0.02 4.22 14 24 H 0.16 3.81 7.91 -2.39 -0.02 3.80 14 Total: -1.00 -65.37 224.69 -0.82 -66.20 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -0.16 Total: 12.91 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: 2.17 Total: -0.29 kcal Atomic # 7 Polarization: -65.76 SS G_CDS: -4.06 Total: -69.82 kcal Atomic # 8 Polarization: -36.99 SS G_CDS: -1.93 Total: -38.92 kcal Atomic # 9 Polarization: -17.72 SS G_CDS: 1.46 Total: -16.26 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.70 Total: 46.18 kcal Total: -65.37 -0.82 -66.20 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238666677.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.390 kcal (2) G-P(sol) polarization free energy of solvation -65.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds