Wall clock time and date at job start Mon Mar 30 2020 20:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30797 * 1 3 3 Si 1.86800 * 120.00051 * 2 1 4 4 H 1.48497 * 109.46822 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46967 * 299.99902 * 3 2 1 6 6 H 1.48498 * 109.46865 * 59.99646 * 3 2 1 7 7 C 1.39983 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99804 * 180.02562 * 7 2 1 9 9 C 1.41077 * 120.00071 * 0.02562 * 7 2 1 10 10 N 1.33820 * 119.72187 * 345.15758 * 9 7 2 11 11 C 1.31634 * 121.48877 * 180.02562 * 10 9 7 12 12 O 1.35659 * 119.61147 * 179.97438 * 11 10 9 13 13 C 1.40306 * 120.77457 * 0.26987 * 11 10 9 14 14 O 1.35712 * 120.31427 * 179.70774 * 13 11 10 15 15 C 1.39305 * 119.37317 * 359.45327 * 13 11 10 16 16 C 1.38064 * 118.61360 * 0.53614 * 15 13 11 17 17 C 1.50699 * 120.40083 * 179.74843 * 16 15 13 18 18 F 1.39899 * 109.47361 * 19.71190 * 17 16 15 19 19 F 1.39904 * 109.46846 * 139.71165 * 17 16 15 20 20 H 0.97000 * 120.00058 * 0.02562 * 1 2 3 21 21 H 0.96701 * 114.00078 * 90.00315 * 12 11 10 22 22 H 0.96696 * 114.00127 * 89.99773 * 14 13 11 23 23 H 1.08000 * 120.69327 * 180.26550 * 15 13 11 24 24 H 1.08996 * 109.46980 * 259.70823 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3080 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 3.7019 1.3463 0.0006 5 1 1.8832 2.3964 -1.2125 6 1 1.8831 2.3964 1.2125 7 6 2.0078 -1.2123 0.0005 8 1 3.0878 -1.2123 0.0010 9 6 1.3024 -2.4341 0.0005 10 7 -0.0023 -2.4469 0.2977 11 6 -0.6940 -3.5667 0.3086 12 8 -2.0150 -3.5357 0.6158 13 6 -0.0798 -4.7929 0.0122 14 8 -0.8006 -5.9426 0.0319 15 6 1.2758 -4.8183 -0.3078 16 6 1.9767 -3.6288 -0.3116 17 6 3.4459 -3.6105 -0.6463 18 9 3.7813 -4.7794 -1.3378 19 9 3.7280 -2.4980 -1.4464 20 1 -0.4850 0.8400 -0.0004 21 1 -2.5940 -3.4140 -0.1491 22 1 -1.2057 -6.1674 -0.8169 23 1 1.7691 -5.7496 -0.5437 24 1 4.0274 -3.5530 0.2738 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238667003.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:54:26 Heat of formation + Delta-G solvation = -153.793283 kcal Electronic energy + Delta-G solvation = -16182.231010 eV Core-core repulsion = 12924.949976 eV Total energy + Delta-G solvation = -3257.281035 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.049 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.13660 -46.14375 -39.08436 -36.26925 -35.95737 -33.52450 -31.07517 -29.43211 -26.24714 -24.41469 -21.97099 -20.97057 -18.18599 -17.57779 -17.31571 -16.61579 -16.44590 -15.63279 -15.00983 -14.80844 -14.49652 -13.64543 -13.00378 -12.86945 -12.67216 -12.51475 -12.25241 -11.71817 -11.28730 -11.18934 -11.07573 -10.72449 -10.44630 -10.10670 -10.00781 -9.48486 -8.50302 -7.90078 -7.59491 -6.74025 -4.81297 2.21151 2.53273 2.98507 2.99061 3.04406 3.78046 4.28756 4.65875 4.84086 5.15655 5.32945 5.38100 5.74045 5.89730 5.98477 6.40367 6.68650 6.91380 7.09123 7.13320 7.39130 7.90567 8.18505 8.29869 8.47005 8.84244 9.65798 10.00304 Molecular weight = 231.05amu Principal moments of inertia in cm(-1) A = 0.022455 B = 0.012839 C = 0.008316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.636837 B = 2180.305193 C = 3366.310234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.706 5.706 2 C 0.065 3.935 3 Si 0.915 3.085 4 H -0.255 1.255 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.406 4.406 8 H 0.102 0.898 9 C 0.286 3.714 10 N -0.485 5.485 11 C 0.333 3.667 12 O -0.489 6.489 13 C -0.127 4.127 14 O -0.486 6.486 15 C -0.022 4.022 16 C -0.337 4.337 17 C 0.339 3.661 18 F -0.220 7.220 19 F -0.198 7.198 20 H 0.280 0.720 21 H 0.384 0.616 22 H 0.351 0.649 23 H 0.117 0.883 24 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.181 -1.869 -2.342 3.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.326 5.326 2 C -0.162 4.162 3 Si 0.738 3.262 4 H -0.179 1.179 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.435 4.435 8 H 0.120 0.880 9 C 0.163 3.837 10 N -0.207 5.207 11 C 0.142 3.858 12 O -0.294 6.294 13 C -0.177 4.177 14 O -0.291 6.291 15 C -0.046 4.046 16 C -0.342 4.342 17 C 0.284 3.716 18 F -0.201 7.201 19 F -0.179 7.179 20 H 0.091 0.909 21 H 0.239 0.761 22 H 0.202 0.798 23 H 0.134 0.866 24 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.973 -1.037 -0.998 2.442 hybrid contribution 0.266 -0.059 -1.308 1.336 sum 2.240 -1.096 -2.305 3.396 Atomic orbital electron populations 1.70080 1.07520 1.28808 1.26202 1.26191 0.95001 1.01771 0.93234 0.86122 0.81017 0.80206 0.78812 1.17871 1.19507 1.19526 1.20024 0.95357 0.89093 1.39012 0.88043 1.17884 0.86632 0.91084 0.88059 1.68283 1.08232 1.25391 1.18830 1.20021 0.85009 0.88263 0.92505 1.84698 1.13778 1.94854 1.36080 1.18936 0.91194 0.86035 1.21562 1.84931 1.68795 1.39887 1.35462 1.20883 0.93003 0.96764 0.93977 1.20807 0.95415 0.95768 1.22221 1.19829 0.94267 0.70076 0.87385 1.92877 1.93833 1.50610 1.82802 1.92951 1.94721 1.53379 1.76834 0.90923 0.76144 0.79846 0.86556 0.88322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.92 11.58 55.55 0.64 -17.28 14 2 C 0.07 1.58 5.48 -17.34 -0.10 1.48 14 3 Si 0.92 17.71 29.56 -169.99 -5.02 12.69 14 4 H -0.26 -4.84 7.11 56.52 0.40 -4.44 14 5 H -0.27 -5.15 7.11 56.52 0.40 -4.75 14 6 H -0.27 -5.15 7.11 56.52 0.40 -4.75 14 7 C -0.41 -10.18 7.90 -37.85 -0.30 -10.48 14 8 H 0.10 2.37 5.84 -52.49 -0.31 2.07 14 9 C 0.29 7.46 6.46 -85.00 -0.55 6.91 14 10 N -0.48 -13.05 8.04 -11.03 -0.09 -13.14 14 11 C 0.33 8.21 7.77 -16.86 -0.13 8.08 14 12 O -0.49 -10.75 13.35 -32.96 -0.44 -11.19 14 13 C -0.13 -2.92 6.79 -38.41 -0.26 -3.18 14 14 O -0.49 -9.84 13.30 -33.12 -0.44 -10.28 14 15 C -0.02 -0.49 9.45 -39.25 -0.37 -0.86 14 16 C -0.34 -7.85 5.78 -103.76 -0.60 -8.45 14 17 C 0.34 6.80 5.12 36.01 0.18 6.99 14 18 F -0.22 -4.26 16.28 2.25 0.04 -4.22 14 19 F -0.20 -4.23 14.57 2.25 0.03 -4.20 14 20 H 0.28 6.37 8.30 -40.82 -0.34 6.03 14 21 H 0.38 6.35 9.06 45.56 0.41 6.76 14 22 H 0.35 5.31 9.06 45.56 0.41 5.72 14 23 H 0.12 2.33 7.44 -52.49 -0.39 1.94 14 24 H 0.10 1.70 8.14 -51.93 -0.42 1.28 14 LS Contribution 230.59 15.07 3.47 3.47 Total: -1.00 -30.43 230.59 -3.36 -33.79 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: 0.57 Total: 9.86 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -2.12 Total: 0.49 kcal Atomic # 7 Polarization: -30.97 SS G_CDS: 0.55 Total: -30.42 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.88 Total: -21.47 kcal Atomic # 9 Polarization: -8.49 SS G_CDS: 0.07 Total: -8.42 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.02 Total: 12.69 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -30.43 -3.36 -33.79 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238667003.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.004 kcal (2) G-P(sol) polarization free energy of solvation -30.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds