Wall clock time and date at job start Mon Mar 30 2020 20:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30777 * 1 3 3 Si 1.86804 * 120.00154 * 2 1 4 4 H 1.48496 * 109.46829 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47153 * 300.00078 * 3 2 1 6 6 H 1.48494 * 109.47000 * 60.00247 * 3 2 1 7 7 C 1.40035 * 119.99781 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99586 * 180.02562 * 7 2 1 9 9 C 1.41067 * 119.99728 * 359.97438 * 7 2 1 10 10 N 1.33800 * 119.87719 * 0.02562 * 9 7 2 11 11 C 1.31392 * 121.69285 * 179.97438 * 10 9 7 12 12 C 1.50706 * 119.37139 * 179.97438 * 11 10 9 13 13 F 1.39895 * 109.47041 * 30.00267 * 12 11 10 14 14 F 1.39897 * 109.46617 * 150.00081 * 12 11 10 15 15 C 1.38771 * 121.25077 * 0.25785 * 11 10 9 16 16 C 1.39047 * 119.60002 * 359.46754 * 15 11 10 17 17 O 1.35843 * 120.78192 * 180.24582 * 16 15 11 18 18 C 1.39633 * 118.43331 * 0.51666 * 16 15 11 19 19 O 1.35650 * 120.61577 * 179.73105 * 18 16 15 20 20 H 0.97006 * 119.99638 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.46786 * 269.99844 * 12 11 10 22 22 H 1.08002 * 120.20195 * 179.72319 * 15 11 10 23 23 H 0.96702 * 114.00001 * 270.27491 * 17 16 15 24 24 H 0.96697 * 114.00066 * 270.02133 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6177 0.0000 4 1 3.7018 1.3463 -0.0006 5 1 1.8831 2.3964 -1.2124 6 1 1.8831 2.3964 1.2125 7 6 2.0079 -1.2128 -0.0005 8 1 3.0879 -1.2127 -0.0001 9 6 1.3025 -2.4344 -0.0005 10 7 -0.0355 -2.4314 -0.0005 11 6 -0.7283 -3.5478 -0.0010 12 6 -2.2340 -3.4834 -0.0004 13 9 -2.6513 -2.3219 -0.6590 14 9 -2.7488 -4.6043 -0.6605 15 6 -0.0999 -4.7851 0.0037 16 6 1.2891 -4.8499 -0.0021 17 8 1.9291 -6.0481 -0.0026 18 6 2.0105 -3.6544 -0.0015 19 8 3.3669 -3.6660 -0.0016 20 1 -0.4850 0.8401 0.0004 21 1 -2.5965 -3.4686 1.0274 22 1 -0.6860 -5.6922 0.0078 23 1 2.1145 -6.3954 0.8807 24 1 3.7602 -3.6701 0.8818 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238675948.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:54:36 Heat of formation + Delta-G solvation = -180.449716 kcal Electronic energy + Delta-G solvation = -16075.334981 eV Core-core repulsion = 12816.898037 eV Total energy + Delta-G solvation = -3258.436944 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.049 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.80739 -47.81618 -40.89056 -38.14388 -37.60275 -35.56609 -32.14786 -31.03372 -28.48587 -26.52667 -23.61766 -22.70777 -20.15172 -19.12111 -18.63649 -18.28992 -17.86646 -17.70399 -16.86645 -16.55287 -16.08503 -15.35483 -14.80692 -14.62898 -14.33414 -14.07434 -13.92258 -13.52752 -13.23897 -12.93004 -12.77051 -12.55962 -12.18684 -12.00136 -11.30006 -11.01848 -9.95943 -9.77118 -9.61559 -8.44695 -6.64979 0.41380 0.71959 1.40931 1.47865 1.56978 2.18643 2.58340 2.82035 3.23061 3.35281 3.46860 3.72002 3.97217 4.16396 4.52770 4.75580 4.94342 5.15062 5.19290 5.47396 5.67736 6.11617 6.38386 6.68176 6.79137 7.24213 7.81371 8.29238 Molecular weight = 231.05amu Principal moments of inertia in cm(-1) A = 0.022082 B = 0.012134 C = 0.007922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.707904 B = 2307.081196 C = 3533.693369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.734 5.734 2 C 0.020 3.980 3 Si 0.993 3.007 4 H -0.254 1.254 5 H -0.269 1.269 6 H -0.260 1.260 7 C -0.431 4.431 8 H 0.097 0.903 9 C 0.209 3.791 10 N -0.479 5.479 11 C 0.071 3.929 12 C 0.332 3.668 13 F -0.203 7.203 14 F -0.204 7.204 15 C -0.307 4.307 16 C 0.142 3.858 17 O -0.498 6.498 18 C -0.097 4.097 19 O -0.486 6.486 20 H 0.286 0.714 21 H 0.156 0.844 22 H 0.135 0.865 23 H 0.404 0.596 24 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.480 -2.613 4.960 5.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.355 5.355 2 C -0.204 4.204 3 Si 0.812 3.188 4 H -0.177 1.177 5 H -0.194 1.194 6 H -0.184 1.184 7 C -0.460 4.460 8 H 0.115 0.885 9 C 0.085 3.915 10 N -0.194 5.194 11 C -0.077 4.077 12 C 0.278 3.722 13 F -0.185 7.185 14 F -0.185 7.185 15 C -0.331 4.331 16 C 0.092 3.908 17 O -0.310 6.310 18 C -0.147 4.147 19 O -0.294 6.294 20 H 0.097 0.903 21 H 0.173 0.827 22 H 0.153 0.847 23 H 0.262 0.738 24 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -1.156 -1.616 3.709 4.208 hybrid contribution 0.752 -0.419 0.755 1.146 sum -0.403 -2.036 4.465 4.923 Atomic orbital electron populations 1.70212 1.08820 1.29919 1.26506 1.27096 0.95825 1.04746 0.92706 0.84994 0.79327 0.75466 0.79007 1.17726 1.19356 1.18429 1.19984 0.95349 0.89776 1.40924 0.88463 1.19178 0.87996 0.92903 0.91391 1.68430 1.07089 1.26373 1.17539 1.21920 0.96275 0.90612 0.98924 1.20270 0.87805 0.70260 0.93860 1.92968 1.91055 1.50308 1.84143 1.92935 1.87887 1.53254 1.84470 1.21330 0.93509 0.98084 1.20183 1.18789 0.90176 0.84210 0.97652 1.84709 1.78569 1.33084 1.34642 1.19913 0.83893 0.92253 1.18633 1.84748 1.15524 1.96231 1.32870 0.90341 0.82685 0.84741 0.73826 0.76926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -37.85 11.46 21.84 0.25 -37.60 14 2 C 0.02 0.99 5.50 85.29 0.47 1.46 14 3 Si 0.99 36.38 29.56 68.60 2.03 38.41 14 4 H -0.25 -9.01 7.11 99.48 0.71 -8.31 14 5 H -0.27 -9.69 7.11 99.48 0.71 -8.98 14 6 H -0.26 -8.97 7.11 99.48 0.71 -8.27 14 7 C -0.43 -22.51 8.95 23.40 0.21 -22.30 14 8 H 0.10 4.83 7.31 -2.91 -0.02 4.81 14 9 C 0.21 11.31 6.56 40.23 0.26 11.57 14 10 N -0.48 -25.68 7.44 -177.05 -1.32 -26.99 14 11 C 0.07 3.31 6.58 42.75 0.28 3.59 14 12 C 0.33 12.83 5.71 71.24 0.41 13.24 14 13 F -0.20 -9.02 17.05 44.97 0.77 -8.25 14 14 F -0.20 -7.50 16.45 44.97 0.74 -6.76 14 15 C -0.31 -13.35 9.39 22.59 0.21 -13.14 14 16 C 0.14 6.34 6.78 22.80 0.15 6.50 14 17 O -0.50 -18.51 13.37 -79.53 -1.06 -19.58 14 18 C -0.10 -4.74 6.78 23.30 0.16 -4.58 14 19 O -0.49 -21.33 12.47 -77.40 -0.97 -22.29 14 20 H 0.29 13.24 8.30 -92.70 -0.77 12.47 14 21 H 0.16 4.63 8.14 -2.39 -0.02 4.61 14 22 H 0.13 5.16 7.59 -2.91 -0.02 5.13 14 23 H 0.40 10.01 9.06 -74.06 -0.67 9.34 14 24 H 0.38 12.50 9.06 -74.06 -0.67 11.83 14 Total: -1.00 -66.64 234.83 2.54 -64.10 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: -0.05 Total: 22.63 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: 2.16 Total: -3.67 kcal Atomic # 7 Polarization: -63.53 SS G_CDS: -1.07 Total: -64.59 kcal Atomic # 8 Polarization: -39.84 SS G_CDS: -2.03 Total: -41.87 kcal Atomic # 9 Polarization: -16.52 SS G_CDS: 1.51 Total: -15.02 kcal Atomic # 14 Polarization: 36.38 SS G_CDS: 2.03 Total: 38.41 kcal Total: -66.64 2.54 -64.10 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238675948.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.346 kcal (2) G-P(sol) polarization free energy of solvation -66.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds