Wall clock time and date at job start Mon Mar 30 2020 20:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86799 * 119.99696 * 2 1 4 4 H 1.48494 * 109.47222 * 270.00100 * 3 2 1 5 5 H 1.48500 * 109.47307 * 30.00538 * 3 2 1 6 6 H 1.48510 * 109.46601 * 150.00033 * 3 2 1 7 7 C 1.39936 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99451 * 193.10578 * 7 2 1 9 9 C 1.41121 * 120.00033 * 13.09875 * 7 2 1 10 10 C 1.40960 * 120.66421 * 27.41828 * 9 7 2 11 11 C 1.38413 * 118.22188 * 180.02562 * 10 9 7 12 12 O 1.35980 * 120.26215 * 180.02562 * 11 10 9 13 13 C 1.39158 * 119.47010 * 359.97438 * 11 10 9 14 14 C 1.50703 * 119.33245 * 180.02562 * 13 11 10 15 15 F 1.39892 * 109.47180 * 300.00131 * 14 13 11 16 16 F 1.39896 * 109.46791 * 60.00456 * 14 13 11 17 17 N 1.32011 * 121.33184 * 359.72938 * 13 11 10 18 18 C 1.32016 * 121.94328 * 0.56503 * 17 13 11 19 19 O 1.35448 * 119.82140 * 179.71750 * 18 17 13 20 20 H 0.97000 * 119.99953 * 359.97438 * 1 2 3 21 21 H 1.07999 * 120.89063 * 359.97438 * 10 9 7 22 22 H 0.96698 * 114.00016 * 89.99743 * 12 11 10 23 23 H 1.09003 * 109.46906 * 180.02562 * 14 13 11 24 24 H 0.96708 * 113.99511 * 264.99860 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.4901 2.0465 -1.4000 5 1 1.4401 2.6527 0.7001 6 1 3.5403 1.4401 0.7001 7 6 2.0084 -1.2119 -0.0005 8 1 3.0673 -1.2241 0.2115 9 6 1.3303 -2.4180 -0.2781 10 6 0.1745 -2.4237 -1.0849 11 6 -0.4508 -3.6352 -1.3240 12 8 -1.5683 -3.6887 -2.0970 13 6 0.0739 -4.7979 -0.7680 14 6 -0.6092 -6.1153 -1.0309 15 9 -1.9222 -6.0637 -0.5511 16 9 -0.6250 -6.3659 -2.4071 17 7 1.1611 -4.7711 -0.0198 18 6 1.7973 -3.6457 0.2477 19 8 2.9060 -3.6672 1.0254 20 1 -0.4850 0.8401 0.0004 21 1 -0.2132 -1.5073 -1.5046 22 1 -1.3897 -3.8216 -3.0380 23 1 -0.0679 -6.9131 -0.5222 24 1 2.7348 -3.4846 1.9595 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238684235.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:54:46 Heat of formation + Delta-G solvation = -166.701464 kcal Electronic energy + Delta-G solvation = -16054.870167 eV Core-core repulsion = 12797.029392 eV Total energy + Delta-G solvation = -3257.840775 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.049 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.23412 -46.23972 -39.14823 -36.90269 -35.07691 -34.50055 -30.99134 -28.78874 -27.30987 -24.11324 -22.00103 -21.24212 -18.21323 -17.71252 -16.98272 -16.82596 -16.47856 -15.70768 -15.54017 -14.89508 -14.33532 -13.92618 -13.16131 -12.94552 -12.65411 -12.39365 -12.02812 -11.97442 -11.57843 -11.44711 -11.16108 -10.85487 -10.58217 -10.45973 -10.05595 -9.64065 -8.49136 -8.24804 -7.67942 -7.15920 -4.86076 2.07579 2.50962 2.86460 2.90162 2.91576 3.62500 4.11136 4.34612 4.79048 4.94333 5.10949 5.41043 5.54821 5.88456 6.40045 6.48334 6.71243 6.72609 7.11963 7.24924 7.51393 7.87330 8.21504 8.27437 8.43321 8.77524 9.13869 9.71433 Molecular weight = 231.05amu Principal moments of inertia in cm(-1) A = 0.038987 B = 0.008560 C = 0.007467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.008407 B = 3270.165577 C = 3749.157203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.067 3.933 3 Si 0.924 3.076 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.419 4.419 8 H 0.097 0.903 9 C 0.077 3.923 10 C -0.159 4.159 11 C 0.107 3.893 12 O -0.497 6.497 13 C -0.106 4.106 14 C 0.344 3.656 15 F -0.204 7.204 16 F -0.212 7.212 17 N -0.442 5.442 18 C 0.175 3.825 19 O -0.477 6.477 20 H 0.291 0.709 21 H 0.140 0.860 22 H 0.377 0.623 23 H 0.109 0.891 24 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.332 -1.322 -1.209 1.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.155 4.155 3 Si 0.747 3.253 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.447 4.447 8 H 0.115 0.885 9 C 0.070 3.930 10 C -0.185 4.185 11 C 0.061 3.939 12 O -0.305 6.305 13 C -0.244 4.244 14 C 0.289 3.711 15 F -0.185 7.185 16 F -0.194 7.194 17 N -0.161 5.161 18 C -0.011 4.011 19 O -0.280 6.280 20 H 0.102 0.898 21 H 0.158 0.842 22 H 0.231 0.769 23 H 0.127 0.873 24 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 0.389 -1.960 -0.876 2.181 hybrid contribution -0.149 1.578 -0.334 1.619 sum 0.241 -0.382 -1.210 1.291 Atomic orbital electron populations 1.69796 1.07863 1.30635 1.31035 1.26203 0.94996 1.02326 0.91945 0.86024 0.80405 0.79041 0.79818 1.18801 1.19825 1.18000 1.19743 0.97427 0.89833 1.37677 0.88500 1.18514 0.91645 0.92866 0.89952 1.21848 0.98168 0.96667 1.01783 1.18975 0.86933 0.92905 0.95123 1.84806 1.29029 1.95270 1.21384 1.20327 0.98585 0.93009 1.12466 1.19696 0.79108 0.96623 0.75662 1.92954 1.40103 1.97658 1.87808 1.92907 1.96707 1.95296 1.34486 1.65863 1.05303 1.32044 1.12875 1.18902 0.92598 0.87955 1.01627 1.84676 1.28201 1.93305 1.21830 0.89765 0.84211 0.76867 0.87340 0.77482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.17 10.92 55.55 0.61 -17.57 14 2 C 0.07 1.51 5.24 -17.32 -0.09 1.42 14 3 Si 0.92 16.76 29.58 -169.99 -5.03 11.74 14 4 H -0.26 -4.75 7.11 56.52 0.40 -4.35 14 5 H -0.27 -4.86 7.11 56.52 0.40 -4.46 14 6 H -0.26 -4.60 7.11 56.52 0.40 -4.20 14 7 C -0.42 -10.09 8.72 -37.85 -0.33 -10.42 14 8 H 0.10 2.25 7.68 -52.49 -0.40 1.85 14 9 C 0.08 1.95 5.57 -106.54 -0.59 1.35 14 10 C -0.16 -3.99 8.71 -38.49 -0.34 -4.32 14 11 C 0.11 2.55 6.58 -39.18 -0.26 2.30 14 12 O -0.50 -10.56 12.36 -19.68 -0.24 -10.80 14 13 C -0.11 -2.49 6.30 -82.17 -0.52 -3.00 14 14 C 0.34 6.86 5.21 36.01 0.19 7.05 14 15 F -0.20 -4.25 16.93 2.25 0.04 -4.21 14 16 F -0.21 -4.08 16.93 2.25 0.04 -4.04 14 17 N -0.44 -10.76 10.24 -8.72 -0.09 -10.85 14 18 C 0.18 4.31 7.80 -16.24 -0.13 4.19 14 19 O -0.48 -10.47 12.89 -18.04 -0.23 -10.70 14 20 H 0.29 6.18 8.30 -40.82 -0.34 5.85 14 21 H 0.14 3.54 6.31 -52.49 -0.33 3.21 14 22 H 0.38 6.23 9.06 45.56 0.41 6.64 14 23 H 0.11 1.89 8.10 -51.93 -0.42 1.47 14 24 H 0.37 6.51 9.06 45.56 0.41 6.93 14 LS Contribution 233.81 15.07 3.52 3.52 Total: -1.00 -28.50 233.81 -2.91 -31.42 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 0.54 Total: 12.94 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -2.06 Total: -1.44 kcal Atomic # 7 Polarization: -28.93 SS G_CDS: 0.52 Total: -28.42 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.48 Total: -21.51 kcal Atomic # 9 Polarization: -8.33 SS G_CDS: 0.08 Total: -8.25 kcal Atomic # 14 Polarization: 16.76 SS G_CDS: -5.03 Total: 11.74 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -28.50 -2.91 -31.42 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238684235.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.282 kcal (2) G-P(sol) polarization free energy of solvation -28.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds