Wall clock time and date at job start Mon Mar 30 2020 20:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30772 * 1 3 3 Si 1.86797 * 120.00282 * 2 1 4 4 H 1.48501 * 109.47018 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47386 * 119.99530 * 3 2 1 6 6 H 1.48501 * 109.47421 * 240.00077 * 3 2 1 7 7 C 1.40033 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00313 * 154.56121 * 7 2 1 9 9 C 1.41236 * 119.99684 * 334.56233 * 7 2 1 10 10 C 1.41248 * 121.04450 * 335.32762 * 9 7 2 11 11 C 1.36333 * 119.17925 * 179.71772 * 10 9 7 12 12 C 1.50703 * 119.28661 * 180.27487 * 11 10 9 13 13 F 1.39900 * 109.47211 * 210.28901 * 12 11 10 14 14 F 1.39902 * 109.46947 * 330.29182 * 12 11 10 15 15 N 1.32267 * 121.42880 * 0.56940 * 11 10 9 16 16 C 1.32119 * 122.33721 * 359.70618 * 15 11 10 17 17 O 1.35774 * 119.69241 * 180.02562 * 16 15 11 18 18 C 1.39364 * 120.61651 * 359.97438 * 16 15 11 19 19 O 1.35703 * 120.74088 * 180.02562 * 18 16 15 20 20 H 0.96997 * 120.00034 * 174.19740 * 1 2 3 21 21 H 1.07995 * 120.40756 * 359.97316 * 10 9 7 22 22 H 1.08994 * 109.46641 * 90.28853 * 12 11 10 23 23 H 0.96700 * 114.00492 * 269.97973 * 17 16 15 24 24 H 0.96705 * 114.00320 * 271.26150 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3077 0.0000 0.0000 3 14 2.2418 1.6177 0.0000 4 1 1.2768 2.7464 -0.0006 5 1 3.0955 1.6964 1.2125 6 1 3.0956 1.6964 -1.2125 7 6 2.0079 -1.2127 0.0005 8 1 3.0093 -1.2582 -0.4012 9 6 1.4044 -2.3763 0.5265 10 6 0.3749 -2.2911 1.4897 11 6 -0.1851 -3.4387 1.9674 12 6 -1.2880 -3.3504 2.9906 13 9 -1.2465 -4.4768 3.8194 14 9 -1.1163 -2.1966 3.7629 15 7 0.2227 -4.6280 1.5566 16 6 1.1842 -4.7755 0.6626 17 8 1.5602 -6.0224 0.2789 18 6 1.8154 -3.6631 0.1091 19 8 2.8030 -3.8117 -0.8097 20 1 -0.4850 -0.8357 -0.0849 21 1 0.0326 -1.3287 1.8403 22 1 -2.2516 -3.3079 2.4832 23 1 2.2692 -6.4022 0.8157 24 1 3.6875 -3.8922 -0.4271 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238687158.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:54:52 Heat of formation + Delta-G solvation = -169.429457 kcal Electronic energy + Delta-G solvation = -16065.678918 eV Core-core repulsion = 12807.719848 eV Total energy + Delta-G solvation = -3257.959070 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.049 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.42897 -46.43780 -39.42056 -36.47176 -36.09409 -34.44638 -30.35875 -29.75790 -26.02946 -25.24010 -22.01144 -21.27161 -18.82155 -17.40399 -17.27513 -16.95967 -16.75235 -16.12274 -15.42737 -14.66225 -14.30801 -13.94574 -13.35806 -13.18183 -12.82199 -12.70795 -12.34214 -11.86918 -11.75885 -11.34448 -11.14592 -10.77673 -10.58250 -10.25200 -10.10790 -9.45187 -8.48190 -8.29149 -7.86668 -7.56837 -4.96579 1.95404 2.35509 2.99700 3.07045 3.20312 3.76516 3.98589 4.20692 4.52401 4.81323 4.89735 5.28222 5.33452 5.50408 6.23308 6.38464 6.61559 6.75794 7.02893 7.21355 7.50139 7.60365 8.02194 8.16900 8.34561 8.76453 8.98662 9.63123 Molecular weight = 231.05amu Principal moments of inertia in cm(-1) A = 0.022324 B = 0.011625 C = 0.007980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.966115 B = 2408.007547 C = 3507.954870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.036 3.964 3 Si 1.071 2.929 4 H -0.269 1.269 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.471 4.471 8 H 0.090 0.910 9 C 0.090 3.910 10 C -0.228 4.228 11 C 0.074 3.926 12 C 0.329 3.671 13 F -0.198 7.198 14 F -0.200 7.200 15 N -0.568 5.568 16 C 0.306 3.694 17 O -0.485 6.485 18 C -0.076 4.076 19 O -0.473 6.473 20 H 0.302 0.698 21 H 0.129 0.871 22 H 0.116 0.884 23 H 0.381 0.619 24 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.922 -0.478 2.946 3.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.189 4.189 3 Si 0.893 3.107 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.500 4.500 8 H 0.108 0.892 9 C 0.082 3.918 10 C -0.251 4.251 11 C -0.058 4.058 12 C 0.274 3.726 13 F -0.179 7.179 14 F -0.182 7.182 15 N -0.295 5.295 16 C 0.129 3.871 17 O -0.290 6.290 18 C -0.127 4.127 19 O -0.278 6.278 20 H 0.116 0.884 21 H 0.147 0.853 22 H 0.133 0.867 23 H 0.236 0.764 24 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 0.378 0.479 2.505 2.578 hybrid contribution 1.342 -1.247 0.379 1.870 sum 1.719 -0.768 2.883 3.444 Atomic orbital electron populations 1.70461 1.08318 1.34660 1.25406 1.27358 0.95595 1.04888 0.91061 0.83541 0.75724 0.73065 0.78408 1.19352 1.19543 1.19641 1.20591 1.03340 0.93218 1.32849 0.89245 1.18029 0.91323 0.92388 0.90032 1.21470 1.03192 0.98180 1.02293 1.20192 0.97838 0.89760 0.97983 1.20084 0.99031 0.70814 0.82650 1.92956 1.97837 1.52568 1.74528 1.92969 1.97087 1.50545 1.77569 1.66305 1.18990 1.26143 1.18042 1.19128 0.92720 0.83686 0.91557 1.84797 1.58026 1.29532 1.56648 1.19424 0.99753 0.91466 1.02018 1.84875 1.16137 1.94979 1.31824 0.88427 0.85327 0.86674 0.76407 0.79535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.82 12.33 55.55 0.69 -18.14 14 2 C 0.04 0.85 4.99 -17.33 -0.09 0.76 14 3 Si 1.07 19.62 30.00 -169.99 -5.10 14.52 14 4 H -0.27 -4.91 7.11 56.52 0.40 -4.51 14 5 H -0.27 -4.76 7.11 56.52 0.40 -4.36 14 6 H -0.27 -4.72 7.11 56.52 0.40 -4.32 14 7 C -0.47 -11.61 8.73 -37.77 -0.33 -11.94 14 8 H 0.09 2.13 7.78 -52.49 -0.41 1.72 14 9 C 0.09 2.28 5.34 -106.42 -0.57 1.71 14 10 C -0.23 -5.52 7.29 -39.12 -0.29 -5.80 14 11 C 0.07 1.70 6.54 -83.09 -0.54 1.16 14 12 C 0.33 6.37 5.71 36.01 0.21 6.58 14 13 F -0.20 -3.95 17.04 2.25 0.04 -3.91 14 14 F -0.20 -3.93 16.40 2.25 0.04 -3.89 14 15 N -0.57 -13.68 9.93 -9.78 -0.10 -13.78 14 16 C 0.31 7.24 7.77 -17.01 -0.13 7.11 14 17 O -0.49 -9.99 13.36 -33.23 -0.44 -10.44 14 18 C -0.08 -1.84 6.81 -37.97 -0.26 -2.09 14 19 O -0.47 -10.48 12.72 -33.02 -0.42 -10.90 14 20 H 0.30 7.65 6.66 -40.82 -0.27 7.37 14 21 H 0.13 3.14 6.02 -52.49 -0.32 2.82 14 22 H 0.12 1.85 8.14 -51.93 -0.42 1.42 14 23 H 0.38 5.66 9.06 45.56 0.41 6.07 14 24 H 0.35 5.98 9.06 45.56 0.41 6.40 14 LS Contribution 233.00 15.07 3.51 3.51 Total: -1.00 -29.76 233.00 -3.18 -32.94 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 0.61 Total: 12.61 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -2.00 Total: -2.53 kcal Atomic # 7 Polarization: -32.51 SS G_CDS: 0.59 Total: -31.92 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: -0.86 Total: -21.34 kcal Atomic # 9 Polarization: -7.87 SS G_CDS: 0.08 Total: -7.80 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.10 Total: 14.52 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -29.76 -3.18 -32.94 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238687158.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.491 kcal (2) G-P(sol) polarization free energy of solvation -29.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds