Wall clock time and date at job start Mon Mar 30 2020 20:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30921 * 1 3 3 Si 1.86806 * 119.99781 * 2 1 4 4 H 1.48489 * 109.47429 * 274.56466 * 3 2 1 5 5 H 1.48498 * 109.46857 * 34.56855 * 3 2 1 6 6 H 1.48507 * 109.46702 * 154.56672 * 3 2 1 7 7 C 1.39878 * 120.00104 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99927 * 336.94036 * 7 2 1 9 9 C 1.41119 * 119.99982 * 156.93807 * 7 2 1 10 10 C 1.41909 * 120.64499 * 319.42165 * 9 7 2 11 11 O 1.35552 * 120.93768 * 0.02740 * 10 9 7 12 12 C 1.38446 * 118.13103 * 180.23774 * 10 9 7 13 13 C 1.39009 * 119.31550 * 359.51578 * 12 10 9 14 14 O 1.35523 * 119.36624 * 180.25093 * 13 12 10 15 15 N 1.32665 * 121.27162 * 0.27226 * 13 12 10 16 16 C 1.31500 * 122.06150 * 359.97438 * 15 13 12 17 17 C 1.50706 * 119.74313 * 179.97438 * 16 15 13 18 18 F 1.39900 * 109.46883 * 120.00197 * 17 16 15 19 19 F 1.39896 * 109.47234 * 239.99623 * 17 16 15 20 20 H 0.97003 * 120.00125 * 0.02562 * 1 2 3 21 21 H 0.96701 * 113.99715 * 265.17289 * 11 10 9 22 22 H 1.08002 * 120.34288 * 179.78982 * 12 10 9 23 23 H 0.96702 * 113.99646 * 89.99871 * 14 13 12 24 24 H 1.08994 * 109.47023 * 0.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3092 0.0000 0.0000 3 14 2.2432 1.6178 0.0000 4 1 2.3942 2.1022 -1.3955 5 1 1.4922 2.6229 0.7944 6 1 3.5857 1.4142 0.6013 7 6 2.0086 -1.2114 -0.0005 8 1 1.5334 -2.1095 0.3654 9 6 3.3352 -1.2600 -0.4793 10 6 3.7137 -0.5312 -1.6367 11 8 2.8130 0.2273 -2.3081 12 6 5.0277 -0.6203 -2.0635 13 6 5.9246 -1.4035 -1.3462 14 8 7.2124 -1.4874 -1.7602 15 7 5.5443 -2.0709 -0.2646 16 6 4.3089 -2.0274 0.1839 17 6 3.9337 -2.8069 1.4180 18 9 3.4655 -1.9278 2.4004 19 9 2.9301 -3.7284 1.1003 20 1 -0.4850 0.8401 -0.0004 21 1 2.3970 -0.2248 -3.0548 22 1 5.3536 -0.0833 -2.9420 23 1 7.7929 -0.8150 -1.3781 24 1 4.8090 -3.3373 1.7928 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238705889.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:55:06 Heat of formation + Delta-G solvation = -179.867212 kcal Electronic energy + Delta-G solvation = -16482.800564 eV Core-core repulsion = 13224.388879 eV Total energy + Delta-G solvation = -3258.411685 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.049 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.75025 -47.74822 -41.13181 -38.72797 -37.29022 -35.57010 -32.41881 -32.14908 -28.47318 -26.17237 -23.64856 -22.92308 -19.98627 -19.85792 -18.71341 -18.32516 -17.97884 -17.49945 -17.04593 -16.74102 -16.00158 -15.54873 -15.34738 -14.98241 -14.56225 -14.15336 -13.84055 -13.58970 -13.50206 -13.03660 -12.77807 -12.38659 -12.23998 -12.11130 -11.19611 -11.06549 -10.42367 -10.22974 -9.67819 -8.99116 -6.65090 0.13969 0.40053 1.31668 1.41014 1.48272 2.18627 2.36675 2.64744 2.97371 3.25159 3.45892 3.56674 4.11002 4.27384 4.31930 4.47765 4.73091 4.98946 5.05290 5.42402 5.52174 6.04987 6.24149 6.57739 6.87141 6.95471 7.19302 8.03405 Molecular weight = 231.05amu Principal moments of inertia in cm(-1) A = 0.021892 B = 0.015994 C = 0.010892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.691763 B = 1750.248309 C = 2569.979736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.081 3.919 3 Si 0.961 3.039 4 H -0.222 1.222 5 H -0.280 1.280 6 H -0.283 1.283 7 C -0.452 4.452 8 H 0.076 0.924 9 C 0.022 3.978 10 C 0.038 3.962 11 O -0.478 6.478 12 C -0.147 4.147 13 C 0.185 3.815 14 O -0.483 6.483 15 N -0.464 5.464 16 C -0.052 4.052 17 C 0.345 3.655 18 F -0.207 7.207 19 F -0.212 7.212 20 H 0.298 0.702 21 H 0.387 0.613 22 H 0.156 0.844 23 H 0.400 0.600 24 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.735 1.721 -1.975 7.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.140 4.140 3 Si 0.785 3.215 4 H -0.147 1.147 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.479 4.479 8 H 0.094 0.906 9 C 0.017 3.983 10 C -0.015 4.015 11 O -0.290 6.290 12 C -0.168 4.168 13 C 0.005 3.995 14 O -0.289 6.289 15 N -0.183 5.183 16 C -0.194 4.194 17 C 0.291 3.709 18 F -0.188 7.188 19 F -0.193 7.193 20 H 0.109 0.891 21 H 0.246 0.754 22 H 0.173 0.827 23 H 0.257 0.743 24 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.985 1.273 -1.488 7.254 hybrid contribution -0.720 0.928 -0.378 1.234 sum 6.265 2.201 -1.866 6.897 Atomic orbital electron populations 1.69758 1.09210 1.32030 1.32967 1.26611 0.94929 1.03513 0.88898 0.85484 0.78177 0.77338 0.80505 1.14659 1.20706 1.20844 1.19285 0.95200 0.97029 1.36374 0.90628 1.18839 0.93972 0.92541 0.92952 1.18656 0.89475 0.99953 0.93386 1.84972 1.57056 1.39318 1.47676 1.22217 0.93308 0.98974 1.02346 1.18350 0.86424 1.00628 0.94062 1.84755 1.16293 1.59331 1.68557 1.66039 1.18836 1.19790 1.13607 1.21300 0.88817 1.09329 0.99931 1.19920 0.86900 0.80587 0.83510 1.92942 1.90869 1.71637 1.63346 1.92920 1.65712 1.67017 1.93664 0.89068 0.75434 0.82684 0.74348 0.83605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.98 13.93 21.82 0.30 -41.67 14 2 C 0.08 4.10 4.87 85.23 0.41 4.52 14 3 Si 0.96 42.50 24.80 68.60 1.70 44.20 14 4 H -0.22 -9.23 6.03 99.48 0.60 -8.63 14 5 H -0.28 -11.74 7.11 99.48 0.71 -11.03 14 6 H -0.28 -13.44 7.11 99.48 0.71 -12.73 14 7 C -0.45 -23.92 7.91 23.37 0.18 -23.73 14 8 H 0.08 4.39 6.65 -2.91 -0.02 4.37 14 9 C 0.02 1.10 4.73 -21.09 -0.10 1.00 14 10 C 0.04 1.63 5.31 23.23 0.12 1.75 14 11 O -0.48 -18.83 8.60 -88.58 -0.76 -19.59 14 12 C -0.15 -5.62 9.97 22.50 0.22 -5.40 14 13 C 0.19 7.35 7.73 84.75 0.66 8.00 14 14 O -0.48 -15.70 13.54 -88.26 -1.20 -16.90 14 15 N -0.46 -20.21 10.25 -294.95 -3.02 -23.23 14 16 C -0.05 -2.41 6.34 43.19 0.27 -2.14 14 17 C 0.35 14.47 5.13 71.24 0.37 14.84 14 18 F -0.21 -9.28 16.57 44.97 0.74 -8.53 14 19 F -0.21 -9.43 15.74 44.97 0.71 -8.72 14 20 H 0.30 13.80 8.30 -92.71 -0.77 13.03 14 21 H 0.39 12.04 9.06 -74.06 -0.67 11.37 14 22 H 0.16 4.84 8.06 -2.91 -0.02 4.82 14 23 H 0.40 8.80 9.06 -74.06 -0.67 8.13 14 24 H 0.15 4.90 8.11 -2.39 -0.02 4.88 14 Total: -1.00 -61.87 224.88 0.46 -61.41 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -0.16 Total: 14.20 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 2.14 Total: -1.17 kcal Atomic # 7 Polarization: -62.19 SS G_CDS: -2.72 Total: -64.91 kcal Atomic # 8 Polarization: -34.53 SS G_CDS: -1.96 Total: -36.49 kcal Atomic # 9 Polarization: -18.70 SS G_CDS: 1.45 Total: -17.25 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 1.70 Total: 44.20 kcal Total: -61.87 0.46 -61.41 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238705889.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.457 kcal (2) G-P(sol) polarization free energy of solvation -61.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds