Wall clock time and date at job start Mon Mar 30 2020 20:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00369 * 2 1 4 4 H 1.48499 * 109.46738 * 90.00059 * 3 2 1 5 5 H 1.48495 * 109.47134 * 210.00279 * 3 2 1 6 6 H 1.48504 * 109.46699 * 330.00278 * 3 2 1 7 7 C 1.37884 * 119.99337 * 179.73047 * 2 1 3 8 8 H 1.08004 * 119.99344 * 180.02562 * 7 2 1 9 9 C 1.50691 * 120.00412 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47237 * 175.08228 * 9 7 2 11 11 C 1.50697 * 110.01777 * 65.52849 * 10 9 7 12 12 C 1.38238 * 119.99944 * 186.11539 * 11 10 9 13 13 C 1.38231 * 119.99913 * 179.79012 * 12 11 10 14 14 C 1.38235 * 119.99801 * 0.46049 * 13 12 11 15 15 C 1.38233 * 120.00443 * 359.76929 * 14 13 12 16 16 C 1.38236 * 119.99827 * 6.38844 * 11 10 9 17 17 C 1.53877 * 110.03062 * 304.13773 * 10 9 7 18 18 C 1.54373 * 106.54810 * 240.73072 * 17 10 9 19 19 C 1.54898 * 104.21451 * 23.57309 * 18 17 10 20 20 C 1.54264 * 110.03217 * 186.92445 * 10 9 7 21 21 H 0.97002 * 120.00555 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47222 * 295.07668 * 9 7 2 23 23 H 1.08999 * 109.47255 * 55.08172 * 9 7 2 24 24 H 1.07998 * 119.99895 * 0.02562 * 12 11 10 25 25 H 1.08002 * 120.00302 * 180.25389 * 13 12 11 26 26 H 1.07999 * 119.99932 * 179.79194 * 14 13 12 27 27 H 1.07997 * 120.00629 * 179.97438 * 15 14 13 28 28 H 1.07995 * 120.00059 * 359.97438 * 16 11 10 29 29 H 1.09007 * 110.03371 * 0.02562 * 17 10 9 30 30 H 1.08998 * 110.03222 * 121.42807 * 17 10 9 31 31 H 1.08997 * 110.46231 * 264.90103 * 18 17 10 32 32 H 1.08994 * 110.49222 * 142.26063 * 18 17 10 33 33 H 1.08997 * 110.75739 * 203.76089 * 19 18 17 34 34 H 1.09000 * 110.75426 * 80.38814 * 19 18 17 35 35 H 1.09003 * 110.48552 * 214.35307 * 20 10 9 36 36 H 1.08998 * 110.48605 * 336.99227 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0462 1.4001 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7000 7 6 2.0044 -1.1942 0.0056 8 1 3.0844 -1.1942 0.0060 9 6 1.2509 -2.4991 0.0123 10 6 2.2404 -3.6601 -0.1060 11 6 3.1154 -3.7190 1.1195 12 6 4.1685 -4.6129 1.1746 13 6 4.9738 -4.6640 2.2970 14 6 4.7202 -3.8278 3.3681 15 6 3.6643 -2.9372 3.3150 16 6 2.8616 -2.8832 2.1909 17 6 3.1078 -3.4871 -1.3651 18 6 2.8400 -4.7188 -2.2563 19 6 1.4440 -5.2173 -1.8066 20 6 1.4771 -4.9900 -0.2748 21 1 -0.4851 -0.8400 0.0004 22 1 0.6924 -2.5914 0.9438 23 1 0.5595 -2.5238 -0.8299 24 1 4.3643 -5.2687 0.3392 25 1 5.7990 -5.3595 2.3384 26 1 5.3473 -3.8700 4.2464 27 1 3.4659 -2.2842 4.1520 28 1 2.0365 -2.1876 2.1494 29 1 2.8241 -2.5758 -1.8917 30 1 4.1617 -3.4465 -1.0899 31 1 3.5936 -5.4867 -2.0816 32 1 2.8222 -4.4325 -3.3078 33 1 1.3187 -6.2751 -2.0375 34 1 0.6548 -4.6239 -2.2682 35 1 2.0107 -5.8016 0.2199 36 1 0.4648 -4.9015 0.1196 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535914772.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:53:01 Heat of formation + Delta-G solvation = -17.893981 kcal Electronic energy + Delta-G solvation = -16350.811497 eV Core-core repulsion = 13990.745129 eV Total energy + Delta-G solvation = -2360.066369 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.05883 -38.44306 -35.43796 -32.93176 -31.69535 -29.95222 -29.62166 -27.24437 -24.74234 -23.19675 -22.76755 -21.49771 -19.91441 -18.81140 -17.66202 -16.32780 -16.13278 -15.74073 -15.60249 -15.14297 -14.95587 -14.45470 -14.21345 -13.89178 -13.47183 -13.28187 -12.79515 -12.51640 -12.43792 -12.06247 -12.00239 -11.93159 -11.92094 -11.83960 -11.37532 -11.29848 -10.95270 -10.53419 -10.49036 -9.66084 -9.35538 -8.59053 -6.25174 0.60886 0.67642 1.48811 1.56978 1.74166 2.56164 3.02229 3.23070 3.76466 3.84144 3.90572 4.19990 4.26156 4.31169 4.42620 4.58900 4.64221 4.70065 4.72768 4.79477 4.85381 4.95533 5.01071 5.11184 5.14690 5.20066 5.29791 5.32523 5.41050 5.50179 5.52965 5.63198 5.73656 5.84178 6.03320 6.11393 6.26771 6.33060 6.68408 7.50951 8.80838 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.019043 B = 0.011550 C = 0.008328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.993010 B = 2423.702234 C = 3361.335340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.041 4.041 3 Si 1.107 2.893 4 H -0.277 1.277 5 H -0.272 1.272 6 H -0.285 1.285 7 C -0.572 4.572 8 H 0.045 0.955 9 C 0.031 3.969 10 C -0.016 4.016 11 C -0.064 4.064 12 C -0.128 4.128 13 C -0.126 4.126 14 C -0.133 4.133 15 C -0.140 4.140 16 C -0.125 4.125 17 C -0.101 4.101 18 C -0.115 4.115 19 C -0.117 4.117 20 C -0.111 4.111 21 H 0.254 0.746 22 H -0.019 1.019 23 H -0.015 1.015 24 H 0.133 0.867 25 H 0.150 0.850 26 H 0.145 0.855 27 H 0.123 0.877 28 H 0.103 0.897 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.090 0.910 34 H 0.047 0.953 35 H 0.078 0.922 36 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.430 -11.303 1.341 14.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.237 4.237 3 Si 0.930 3.070 4 H -0.203 1.203 5 H -0.197 1.197 6 H -0.211 1.211 7 C -0.610 4.610 8 H 0.063 0.937 9 C -0.006 4.006 10 C -0.017 4.017 11 C -0.064 4.064 12 C -0.146 4.146 13 C -0.144 4.144 14 C -0.150 4.150 15 C -0.158 4.158 16 C -0.143 4.143 17 C -0.139 4.139 18 C -0.153 4.153 19 C -0.155 4.155 20 C -0.148 4.148 21 H 0.063 0.937 22 H -0.001 1.001 23 H 0.003 0.997 24 H 0.151 0.849 25 H 0.167 0.833 26 H 0.163 0.837 27 H 0.141 0.859 28 H 0.121 0.879 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.066 0.934 35 H 0.097 0.903 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.252 -9.667 1.334 13.448 hybrid contribution -0.564 -1.024 0.091 1.173 sum 8.688 -10.692 1.426 13.850 Atomic orbital electron populations 1.70881 1.07919 1.29643 1.49939 1.27092 0.96577 1.06241 0.93812 0.83044 0.74312 0.72085 0.77528 1.20253 1.19741 1.21097 1.22188 0.93964 0.92445 1.52394 0.93686 1.19243 0.94098 0.94066 0.93198 1.20107 0.94199 0.94809 0.92540 1.19968 0.96221 0.95449 0.94733 1.21166 0.95174 0.98990 0.99266 1.21395 0.99947 0.99865 0.93200 1.21366 0.97642 0.96257 0.99782 1.21357 0.96607 0.99975 0.97873 1.21460 1.00369 0.98425 0.94050 1.22183 0.98356 0.98415 0.94900 1.22389 0.97153 0.96854 0.98871 1.22449 0.97220 1.01381 0.94420 1.22507 0.99032 0.95921 0.97372 0.93699 1.00088 0.99683 0.84872 0.83260 0.83693 0.85869 0.87937 0.93716 0.92442 0.89765 0.91380 0.89179 0.93377 0.90335 0.93639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.38 13.65 21.45 0.29 -59.09 16 2 C -0.04 -2.36 5.46 84.66 0.46 -1.90 16 3 Si 1.11 52.00 29.90 68.60 2.05 54.05 16 4 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 5 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 7 C -0.57 -32.07 5.78 25.60 0.15 -31.92 16 8 H 0.04 2.54 7.12 -2.91 -0.02 2.52 16 9 C 0.03 1.60 2.67 29.85 0.08 1.68 16 10 C -0.02 -0.67 0.51 -52.20 -0.03 -0.70 16 11 C -0.06 -2.51 4.34 -19.87 -0.09 -2.59 16 12 C -0.13 -4.05 8.05 22.27 0.18 -3.87 16 13 C -0.13 -3.43 10.05 22.27 0.22 -3.21 16 14 C -0.13 -3.77 10.05 22.27 0.22 -3.54 16 15 C -0.14 -4.91 10.05 22.27 0.22 -4.68 16 16 C -0.12 -5.33 8.27 22.27 0.18 -5.14 16 17 C -0.10 -3.83 5.04 31.36 0.16 -3.67 16 18 C -0.12 -3.33 6.83 31.71 0.22 -3.11 16 19 C -0.12 -3.47 6.91 31.89 0.22 -3.25 16 20 C -0.11 -3.81 5.83 31.67 0.18 -3.62 16 21 H 0.25 16.20 7.19 -92.71 -0.67 15.53 16 22 H -0.02 -1.07 6.88 -2.39 -0.02 -1.09 16 23 H -0.02 -0.86 7.81 -2.39 -0.02 -0.87 16 24 H 0.13 3.58 7.83 -2.91 -0.02 3.56 16 25 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 26 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 27 H 0.12 3.89 8.06 -2.91 -0.02 3.86 16 28 H 0.10 5.18 5.19 -2.91 -0.02 5.16 16 29 H 0.04 1.99 6.92 -2.38 -0.02 1.98 16 30 H 0.06 2.09 7.02 -2.39 -0.02 2.07 16 31 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.08 2.36 7.33 -2.39 -0.02 2.35 16 36 H 0.04 1.67 7.84 -2.39 -0.02 1.65 16 Total: -1.00 -65.87 282.57 5.88 -59.99 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 1.14 Total: 14.58 kcal Atomic # 6 Polarization: -71.93 SS G_CDS: 2.39 Total: -69.54 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: 0.29 Total: -59.09 kcal Atomic # 14 Polarization: 52.00 SS G_CDS: 2.05 Total: 54.05 kcal Total: -65.87 5.88 -59.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535914772.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.099 kcal (2) G-P(sol) polarization free energy of solvation -65.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds