Wall clock time and date at job start Mon Mar 30 2020 20:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30631 * 1 3 3 Si 1.86800 * 119.99983 * 2 1 4 4 H 1.48500 * 109.46751 * 274.97773 * 3 2 1 5 5 H 1.48493 * 109.47209 * 34.98001 * 3 2 1 6 6 H 1.48498 * 109.47139 * 154.98207 * 3 2 1 7 7 C 1.40189 * 120.00009 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00284 * 186.25875 * 7 2 1 9 9 C 1.41447 * 119.99707 * 6.25678 * 7 2 1 10 10 C 1.40601 * 120.23113 * 173.72491 * 9 7 2 11 11 C 1.39550 * 118.70450 * 180.02562 * 10 9 7 12 12 O 1.22119 * 120.35678 * 180.02562 * 11 10 9 13 13 N 1.35045 * 119.29049 * 359.97438 * 11 10 9 14 14 C 1.36400 * 119.20556 * 179.97438 * 13 11 10 15 15 C 1.34814 * 121.09705 * 179.97438 * 14 13 11 16 16 C 1.41095 * 120.08161 * 359.97438 * 15 14 13 17 17 N 1.38483 * 120.39242 * 180.02562 * 16 15 14 18 18 C 1.38301 * 119.22125 * 0.02562 * 16 15 14 19 19 C 1.37148 * 120.18264 * 359.97438 * 13 11 10 20 20 N 1.32950 * 121.10215 * 0.02562 * 19 13 11 21 21 H 0.97002 * 119.99894 * 0.02562 * 1 2 3 22 22 H 1.07994 * 120.64792 * 0.02562 * 10 9 7 23 23 H 1.07996 * 119.44846 * 359.97438 * 14 13 11 24 24 H 1.07996 * 119.96568 * 180.02562 * 15 14 13 25 25 H 0.97006 * 119.99781 * 359.97438 * 17 16 15 26 26 H 0.96994 * 120.00671 * 180.02562 * 17 16 15 27 27 H 1.08009 * 120.35644 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.3825 2.1071 -1.3948 5 1 1.4944 2.6200 0.8026 6 1 3.5865 1.4121 0.5921 7 6 2.0073 -1.2141 0.0005 8 1 3.0824 -1.2169 0.1025 9 6 1.3063 -2.4354 -0.1324 10 6 2.0106 -3.6451 -0.2649 11 6 1.2870 -4.8312 -0.3945 12 8 1.8680 -5.8990 -0.5110 13 7 -0.0627 -4.7858 -0.3888 14 6 -0.7683 -5.9462 -0.5162 15 6 -2.1164 -5.9451 -0.5148 16 6 -2.8225 -4.7310 -0.3797 17 7 -4.2073 -4.7225 -0.3769 18 6 -2.1154 -3.5495 -0.2500 19 6 -0.7116 -3.5848 -0.2562 20 7 -0.0337 -2.4480 -0.1319 21 1 -0.4850 0.8401 -0.0004 22 1 3.0905 -3.6561 -0.2663 23 1 -0.2381 -6.8813 -0.6199 24 1 -2.6567 -6.8746 -0.6165 25 1 -4.6976 -5.5545 -0.4686 26 1 -4.6870 -3.8846 -0.2840 27 1 -2.6373 -2.6097 -0.1458 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260269611.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:55:23 Heat of formation + Delta-G solvation = 30.283355 kcal Electronic energy + Delta-G solvation = -15428.747253 eV Core-core repulsion = 12765.970661 eV Total energy + Delta-G solvation = -2662.776592 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.075 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.97972 -37.42224 -36.09040 -34.75478 -33.23528 -30.84850 -30.35796 -27.73610 -26.58326 -23.04370 -22.68786 -21.64463 -18.58993 -17.82572 -17.24264 -16.46801 -15.62142 -15.13852 -15.03786 -14.58442 -14.31485 -13.17490 -12.98516 -12.82956 -12.50935 -11.83053 -11.66795 -11.40878 -11.30943 -11.19738 -10.81293 -10.69163 -10.37696 -9.47051 -8.70514 -8.30597 -8.21644 -8.08741 -6.76591 -6.26922 -4.86522 1.45175 1.90196 2.90935 2.98399 3.03010 3.57262 3.58745 3.78233 3.86121 3.95099 4.61203 5.14576 5.40647 5.53451 5.71601 5.82070 6.05969 6.45506 6.46642 6.69548 6.86016 6.95551 7.24965 7.42980 7.53287 7.65439 7.83625 7.95349 8.16664 8.34615 8.67773 9.40357 9.71554 9.99705 Molecular weight = 231.07amu Principal moments of inertia in cm(-1) A = 0.030687 B = 0.008837 C = 0.006882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.216326 B = 3167.833402 C = 4067.510073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.699 5.699 2 C 0.064 3.936 3 Si 0.917 3.083 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.392 4.392 8 H 0.094 0.906 9 C 0.287 3.713 10 C -0.473 4.473 11 C 0.492 3.508 12 O -0.617 6.617 13 N -0.464 5.464 14 C 0.151 3.849 15 C -0.254 4.254 16 C 0.257 3.743 17 N -0.863 5.863 18 C -0.246 4.246 19 C 0.392 3.608 20 N -0.491 5.491 21 H 0.280 0.720 22 H 0.116 0.884 23 H 0.164 0.836 24 H 0.137 0.863 25 H 0.397 0.603 26 H 0.401 0.599 27 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.633 -2.148 -0.357 9.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.318 5.318 2 C -0.165 4.165 3 Si 0.740 3.260 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.421 4.421 8 H 0.113 0.887 9 C 0.169 3.831 10 C -0.499 4.499 11 C 0.312 3.688 12 O -0.510 6.510 13 N -0.172 5.172 14 C 0.024 3.976 15 C -0.280 4.280 16 C 0.145 3.855 17 N -0.400 5.400 18 C -0.276 4.276 19 C 0.142 3.858 20 N -0.214 5.214 21 H 0.092 0.908 22 H 0.134 0.866 23 H 0.181 0.819 24 H 0.155 0.845 25 H 0.224 0.776 26 H 0.229 0.771 27 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.496 -1.669 -0.308 9.646 hybrid contribution 0.324 0.006 -0.103 0.340 sum -9.172 -1.663 -0.410 9.331 Atomic orbital electron populations 1.70020 1.07529 1.28839 1.25420 1.26317 0.95097 1.01870 0.93183 0.86138 0.80658 0.79763 0.79419 1.19077 1.19770 1.18075 1.19927 0.95369 0.89036 1.37781 0.88746 1.18542 0.87030 0.92765 0.84757 1.21773 0.99306 0.90554 1.38223 1.16916 0.78551 0.91777 0.81543 1.90742 1.67200 1.32532 1.60506 1.44625 1.10374 1.06988 1.55177 1.21839 0.92367 0.92236 0.91141 1.20152 0.92753 0.97444 1.17631 1.17778 0.84118 0.93325 0.90323 1.42131 1.03218 1.11817 1.82861 1.20027 0.89881 0.97288 1.20363 1.20553 0.93475 0.80243 0.91553 1.69902 1.09068 1.17287 1.25098 0.90847 0.86570 0.81885 0.84539 0.77550 0.77061 0.83762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -17.36 11.52 55.56 0.64 -16.72 15 2 C 0.06 1.54 5.49 -17.33 -0.10 1.45 15 3 Si 0.92 17.63 29.57 -169.99 -5.03 12.61 15 4 H -0.27 -5.06 7.11 56.52 0.40 -4.66 15 5 H -0.27 -5.07 7.11 56.52 0.40 -4.67 15 6 H -0.26 -4.90 7.11 56.52 0.40 -4.50 15 7 C -0.39 -10.41 9.17 -37.63 -0.34 -10.76 15 8 H 0.09 2.37 7.86 -52.49 -0.41 1.95 15 9 C 0.29 8.10 6.56 -84.81 -0.56 7.54 15 10 C -0.47 -13.42 9.82 -38.20 -0.38 -13.79 15 11 C 0.49 13.53 7.34 -15.65 -0.11 13.41 15 12 O -0.62 -17.74 16.63 4.81 0.08 -17.66 15 13 N -0.46 -11.03 2.78 -65.54 -0.18 -11.21 15 14 C 0.15 2.85 10.04 -16.73 -0.17 2.68 15 15 C -0.25 -3.80 9.86 -39.71 -0.39 -4.19 15 16 C 0.26 3.90 6.79 -83.75 -0.57 3.33 15 17 N -0.86 -8.84 9.04 32.50 0.29 -8.55 15 18 C -0.25 -4.73 9.85 -38.74 -0.38 -5.12 15 19 C 0.39 9.39 7.33 -155.84 -1.14 8.25 15 20 N -0.49 -13.26 7.90 -10.26 -0.08 -13.34 15 21 H 0.28 6.17 8.29 -40.82 -0.34 5.83 15 22 H 0.12 3.26 8.06 -52.49 -0.42 2.84 15 23 H 0.16 2.89 7.28 -52.49 -0.38 2.51 15 24 H 0.14 1.49 8.06 -52.49 -0.42 1.07 15 25 H 0.40 2.95 8.85 -40.82 -0.36 2.59 15 26 H 0.40 3.53 8.83 -40.82 -0.36 3.17 15 27 H 0.14 2.68 8.06 -52.48 -0.42 2.26 15 LS Contribution 246.28 15.07 3.71 3.71 Total: -1.00 -33.32 246.28 -6.62 -39.94 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -1.92 Total: 8.39 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -4.14 Total: 2.82 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: 0.67 Total: -49.81 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: 0.08 Total: -17.66 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.03 Total: 12.61 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -33.32 -6.62 -39.94 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260269611.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.227 kcal (2) G-P(sol) polarization free energy of solvation -33.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds