Wall clock time and date at job start Mon Mar 30 2020 20:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.52995 * 109.46980 * 155.12996 * 3 2 1 5 5 H 1.08997 * 109.71326 * 55.53654 * 4 3 2 6 6 C 1.53563 * 109.26068 * 176.42010 * 4 3 2 7 7 C 1.53117 * 109.33224 * 169.69470 * 6 4 3 8 8 C 1.53368 * 109.49128 * 289.54050 * 7 6 4 9 9 C 1.50791 * 108.37432 * 49.89920 * 8 7 6 10 10 C 1.35665 * 124.18257 * 343.66409 * 9 8 7 11 11 C 1.39574 * 108.02059 * 180.02562 * 10 9 8 12 12 N 1.31163 * 108.29249 * 359.82913 * 11 10 9 13 13 N 1.35632 * 128.09873 * 163.38670 * 9 8 7 14 14 C 1.37403 * 126.17347 * 0.23631 * 13 9 8 15 15 H 1.07994 * 120.00459 * 5.59875 * 14 13 9 16 16 C 1.38989 * 119.99322 * 185.59312 * 14 13 9 17 17 N 1.31284 * 120.00734 * 353.76569 * 16 14 13 18 18 Si 1.86810 * 119.99725 * 174.03313 * 16 14 13 19 19 H 1.48500 * 109.46668 * 94.98548 * 18 16 14 20 20 H 1.48491 * 109.47286 * 214.98332 * 18 16 14 21 21 H 1.48497 * 109.47297 * 334.98773 * 18 16 14 22 22 H 1.09003 * 109.47223 * 35.13129 * 3 2 1 23 23 H 1.09000 * 109.47593 * 275.12945 * 3 2 1 24 24 H 1.08998 * 109.72816 * 49.63398 * 6 4 3 25 25 H 1.08998 * 109.38659 * 289.54475 * 6 4 3 26 26 H 1.09002 * 109.46737 * 169.53123 * 7 6 4 27 27 H 1.08999 * 109.46590 * 49.54404 * 7 6 4 28 28 H 1.08993 * 109.68746 * 290.17411 * 8 7 6 29 29 H 1.09006 * 109.68184 * 169.61766 * 8 7 6 30 30 H 1.08007 * 125.85397 * 179.82458 * 11 10 9 31 31 H 0.96993 * 120.00946 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.3096 -0.6066 5 1 2.6921 2.1553 -0.0663 6 6 4.6503 1.3441 -0.5226 7 6 5.1771 2.5192 -1.3509 8 6 4.9781 2.2237 -2.8426 9 6 3.5500 1.7888 -3.0547 10 6 2.7207 1.3841 -2.0601 11 6 1.4884 1.0609 -2.6302 12 7 1.5665 1.2660 -3.9233 13 7 2.8578 1.7282 -4.2195 14 6 3.3365 2.0551 -5.4653 15 1 4.3778 2.3111 -5.5937 16 6 2.4804 2.0564 -6.5603 17 7 1.2463 1.6282 -6.4293 18 14 3.0882 2.6602 -8.2203 19 1 3.5487 1.5033 -9.0295 20 1 1.9828 3.3522 -8.9304 21 1 4.2163 3.6050 -8.0207 22 1 2.9717 -0.8397 -0.5914 23 1 2.9715 -0.0911 1.0235 24 1 5.0612 0.4125 -0.9116 25 1 4.9529 1.4682 0.5172 26 1 6.2384 2.6606 -1.1469 27 1 4.6321 3.4248 -1.0841 28 1 5.6544 1.4271 -3.1525 29 1 5.1784 3.1232 -3.4249 30 1 0.6194 0.7033 -2.0977 31 1 0.6487 1.6294 -7.1933 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082825310.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:54:10 Heat of formation + Delta-G solvation = 87.508936 kcal Electronic energy + Delta-G solvation = -15831.092277 eV Core-core repulsion = 13306.630267 eV Total energy + Delta-G solvation = -2524.462010 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.02298 -36.85724 -35.64161 -33.45431 -32.37884 -30.03388 -28.14445 -26.59366 -24.97745 -21.96917 -21.02825 -20.33099 -17.79382 -17.14007 -16.88319 -15.44351 -15.01491 -14.31222 -14.00134 -13.44204 -13.25170 -13.14110 -13.03826 -12.44492 -12.08881 -11.85547 -11.65486 -11.54896 -11.40873 -11.14422 -10.87053 -10.67291 -10.56406 -10.41146 -10.10759 -9.76298 -9.36563 -8.61878 -8.01183 -6.93340 -6.54242 -4.24846 2.95972 3.05869 3.10737 3.20334 3.24103 3.59290 3.84442 4.24396 4.45410 4.68801 5.02824 5.27401 5.31700 5.41876 5.57968 5.77301 5.85311 5.99995 6.07916 6.16777 6.24837 6.35723 6.41188 6.49032 6.58899 6.81331 6.89042 7.05554 7.21717 7.67292 7.91473 8.02335 8.25315 8.71932 9.46238 9.70972 10.42518 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.031236 B = 0.008525 C = 0.006835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.199531 B = 3283.633579 C = 4095.809900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C 0.224 3.776 3 C -0.020 4.020 4 C 0.013 3.987 5 H 0.066 0.934 6 C -0.106 4.106 7 C -0.107 4.107 8 C -0.033 4.033 9 C -0.021 4.021 10 C -0.282 4.282 11 C -0.042 4.042 12 N -0.267 5.267 13 N -0.143 5.143 14 C -0.327 4.327 15 H 0.115 0.885 16 C 0.048 3.952 17 N -0.772 5.772 18 Si 0.930 3.070 19 H -0.271 1.271 20 H -0.276 1.276 21 H -0.263 1.263 22 H 0.106 0.894 23 H 0.100 0.900 24 H 0.066 0.934 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.146 0.854 31 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.141 -0.055 8.010 12.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.133 5.133 2 C -0.093 4.093 3 C -0.060 4.060 4 C -0.008 4.008 5 H 0.084 0.916 6 C -0.144 4.144 7 C -0.145 4.145 8 C -0.072 4.072 9 C -0.153 4.153 10 C -0.296 4.296 11 C -0.217 4.217 12 N -0.096 5.096 13 N 0.092 4.908 14 C -0.459 4.459 15 H 0.132 0.868 16 C -0.169 4.169 17 N -0.399 5.399 18 Si 0.754 3.246 19 H -0.197 1.197 20 H -0.201 1.201 21 H -0.187 1.187 22 H 0.124 0.876 23 H 0.118 0.882 24 H 0.084 0.916 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.163 0.837 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.567 -0.154 6.709 9.389 hybrid contribution 0.895 0.266 -0.184 0.951 sum 7.462 0.112 6.525 9.913 Atomic orbital electron populations 1.81157 1.13214 1.09099 1.09842 1.29164 0.95440 0.92753 0.91954 1.19457 0.81719 1.01870 1.02947 1.19330 0.94463 0.93961 0.93063 0.91618 1.21601 0.94614 0.99227 0.98943 1.21461 0.99697 0.98536 0.94793 1.19873 0.91443 1.00095 0.95742 1.20322 0.95508 1.12631 0.86856 1.18950 0.95367 1.21754 0.93509 1.23360 0.97444 1.07319 0.93547 1.78382 0.97309 1.21303 1.12582 1.44613 1.06772 1.35135 1.04312 1.19843 0.96474 1.47979 0.81634 0.86782 1.25620 0.95080 0.95726 1.00438 1.70214 1.04673 1.33835 1.31200 0.85888 0.78988 0.79230 0.80529 1.19683 1.20100 1.18723 0.87631 0.88232 0.91556 0.92345 0.92261 0.91986 0.92040 0.91921 0.83723 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.75 17.68 42.15 0.75 -8.01 16 2 C 0.22 3.68 12.81 -20.76 -0.27 3.41 16 3 C -0.02 -0.25 5.13 -29.52 -0.15 -0.40 16 4 C 0.01 0.19 2.57 -91.41 -0.23 -0.04 16 5 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 6 C -0.11 -1.33 5.20 -26.38 -0.14 -1.46 16 7 C -0.11 -1.47 5.90 -26.48 -0.16 -1.62 16 8 C -0.03 -0.58 5.87 -27.65 -0.16 -0.74 16 9 C -0.02 -0.49 6.72 -81.79 -0.55 -1.04 16 10 C -0.28 -6.04 5.43 -104.97 -0.57 -6.61 16 11 C -0.04 -1.06 10.87 -17.34 -0.19 -1.25 16 12 N -0.27 -7.75 10.46 30.62 0.32 -7.43 16 13 N -0.14 -3.89 3.72 -7.85 -0.03 -3.92 16 14 C -0.33 -8.72 10.05 -14.78 -0.15 -8.86 16 15 H 0.11 2.74 7.68 -52.49 -0.40 2.34 16 16 C 0.05 1.26 5.50 -17.51 -0.10 1.16 16 17 N -0.77 -21.91 11.85 55.49 0.66 -21.25 16 18 Si 0.93 19.18 29.56 -169.99 -5.02 14.16 16 19 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 20 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 21 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 22 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 23 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.07 0.82 8.09 -51.93 -0.42 0.40 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 0.88 8.11 -51.93 -0.42 0.46 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.15 3.53 5.51 -52.48 -0.29 3.24 16 31 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 265.32 15.07 4.00 4.00 Total: -1.00 -32.71 265.32 -5.62 -38.33 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -3.63 Total: 1.58 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: -2.66 Total: -17.45 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: 1.69 Total: -40.61 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.02 Total: 14.16 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.71 -5.62 -38.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082825310.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.834 kcal (2) G-P(sol) polarization free energy of solvation -32.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds