Wall clock time and date at job start Mon Mar 30 2020 20:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 C 1.52995 * 109.46980 * 155.12996 * 3 2 1 5 5 H 1.08997 * 109.71326 * 55.53654 * 4 3 2 6 6 C 1.53563 * 109.26068 * 176.42010 * 4 3 2 7 7 C 1.53117 * 109.33224 * 169.69470 * 6 4 3 8 8 C 1.53368 * 109.49128 * 289.54050 * 7 6 4 9 9 C 1.50791 * 108.37432 * 49.89920 * 8 7 6 10 10 C 1.35665 * 124.18257 * 343.66409 * 9 8 7 11 11 C 1.39574 * 108.02059 * 180.02562 * 10 9 8 12 12 N 1.31163 * 108.29249 * 359.82913 * 11 10 9 13 13 N 1.35632 * 128.09873 * 163.38670 * 9 8 7 14 14 C 1.37403 * 126.17347 * 0.23631 * 13 9 8 15 15 H 1.07994 * 120.00459 * 5.59875 * 14 13 9 16 16 C 1.38989 * 119.99322 * 185.59312 * 14 13 9 17 17 N 1.31284 * 120.00734 * 353.76569 * 16 14 13 18 18 Si 1.86810 * 119.99725 * 174.03313 * 16 14 13 19 19 H 1.48500 * 109.46668 * 94.98548 * 18 16 14 20 20 H 1.48491 * 109.47286 * 214.98332 * 18 16 14 21 21 H 1.48497 * 109.47297 * 334.98773 * 18 16 14 22 22 H 1.09003 * 109.47223 * 35.13129 * 3 2 1 23 23 H 1.09000 * 109.47593 * 275.12945 * 3 2 1 24 24 H 1.08998 * 109.72816 * 49.63398 * 6 4 3 25 25 H 1.08998 * 109.38659 * 289.54475 * 6 4 3 26 26 H 1.09002 * 109.46737 * 169.53123 * 7 6 4 27 27 H 1.08999 * 109.46590 * 49.54404 * 7 6 4 28 28 H 1.08993 * 109.68746 * 290.17411 * 8 7 6 29 29 H 1.09006 * 109.68184 * 169.61766 * 8 7 6 30 30 H 1.08007 * 125.85397 * 179.82458 * 11 10 9 31 31 H 0.96993 * 120.00946 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.3096 -0.6066 5 1 2.6921 2.1553 -0.0663 6 6 4.6503 1.3441 -0.5226 7 6 5.1771 2.5192 -1.3509 8 6 4.9781 2.2237 -2.8426 9 6 3.5500 1.7888 -3.0547 10 6 2.7207 1.3841 -2.0601 11 6 1.4884 1.0609 -2.6302 12 7 1.5665 1.2660 -3.9233 13 7 2.8578 1.7282 -4.2195 14 6 3.3365 2.0551 -5.4653 15 1 4.3778 2.3111 -5.5937 16 6 2.4804 2.0564 -6.5603 17 7 1.2463 1.6282 -6.4293 18 14 3.0882 2.6602 -8.2203 19 1 3.5487 1.5033 -9.0295 20 1 1.9828 3.3522 -8.9304 21 1 4.2163 3.6050 -8.0207 22 1 2.9717 -0.8397 -0.5914 23 1 2.9715 -0.0911 1.0235 24 1 5.0612 0.4125 -0.9116 25 1 4.9529 1.4682 0.5172 26 1 6.2384 2.6606 -1.1469 27 1 4.6321 3.4248 -1.0841 28 1 5.6544 1.4271 -3.1525 29 1 5.1784 3.1232 -3.4249 30 1 0.6194 0.7033 -2.0977 31 1 0.6487 1.6294 -7.1933 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082825310.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:54:10 Heat of formation + Delta-G solvation = 66.405552 kcal Electronic energy + Delta-G solvation = -15832.007389 eV Core-core repulsion = 13306.630267 eV Total energy + Delta-G solvation = -2525.377121 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 231.107 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.77877 -38.23261 -36.98852 -35.32532 -33.81473 -31.78377 -29.71332 -27.89842 -26.88513 -23.36287 -22.40440 -22.17603 -19.31538 -18.88109 -18.19220 -17.26534 -16.43966 -15.84388 -15.41882 -15.06490 -14.81535 -14.49954 -14.31131 -13.88769 -13.51565 -13.39199 -13.20943 -13.06381 -12.95165 -12.75754 -12.33345 -12.13348 -11.92499 -11.53861 -11.33012 -11.20975 -11.03788 -10.48694 -9.98803 -8.74144 -8.46530 -6.26354 1.29913 1.35531 1.52977 1.80144 1.93035 1.98045 2.12197 2.40118 2.88155 3.09122 3.31890 4.12548 4.17453 4.23148 4.39587 4.55754 4.69205 4.75280 4.82048 4.97631 5.02721 5.08836 5.10815 5.21386 5.24962 5.37622 5.50378 5.60165 5.74950 5.93560 6.03774 6.39720 6.77890 6.81780 7.59051 7.77708 8.53671 Molecular weight = 231.11amu Principal moments of inertia in cm(-1) A = 0.031236 B = 0.008525 C = 0.006835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.199531 B = 3283.633579 C = 4095.809900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C 0.240 3.760 3 C -0.015 4.015 4 C 0.011 3.989 5 H 0.072 0.928 6 C -0.100 4.100 7 C -0.103 4.103 8 C -0.035 4.035 9 C -0.027 4.027 10 C -0.267 4.267 11 C -0.065 4.065 12 N -0.331 5.331 13 N -0.177 5.177 14 C -0.358 4.358 15 H 0.133 0.867 16 C -0.007 4.007 17 N -0.831 5.831 18 Si 1.012 2.988 19 H -0.264 1.264 20 H -0.278 1.278 21 H -0.244 1.244 22 H 0.114 0.886 23 H 0.161 0.839 24 H 0.073 0.927 25 H 0.107 0.893 26 H 0.097 0.903 27 H 0.055 0.945 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.144 0.856 31 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.623 0.277 9.934 16.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.196 5.196 2 C -0.076 4.076 3 C -0.055 4.055 4 C -0.010 4.010 5 H 0.090 0.910 6 C -0.137 4.137 7 C -0.141 4.141 8 C -0.074 4.074 9 C -0.158 4.158 10 C -0.281 4.281 11 C -0.240 4.240 12 N -0.160 5.160 13 N 0.056 4.944 14 C -0.489 4.489 15 H 0.150 0.850 16 C -0.217 4.217 17 N -0.460 5.460 18 Si 0.831 3.169 19 H -0.189 1.189 20 H -0.204 1.204 21 H -0.167 1.167 22 H 0.132 0.868 23 H 0.178 0.822 24 H 0.092 0.908 25 H 0.125 0.875 26 H 0.116 0.884 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.161 0.839 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.078 0.179 8.659 13.288 hybrid contribution -0.153 0.149 -0.628 0.663 sum 9.926 0.328 8.031 12.772 Atomic orbital electron populations 1.81169 1.15385 1.10976 1.12074 1.30046 0.96349 0.91056 0.90114 1.19771 0.78774 1.00514 1.06432 1.19550 0.97279 0.95648 0.88553 0.91021 1.21640 0.91445 0.98934 1.01703 1.21515 1.02217 0.98841 0.91542 1.20135 0.88012 1.00094 0.99183 1.21505 0.97906 1.10565 0.85835 1.19706 0.93087 1.18334 0.96936 1.23608 0.99145 1.08058 0.93205 1.78238 0.99634 1.23389 1.14756 1.44888 1.06799 1.36984 1.05757 1.20438 0.97542 1.48664 0.82249 0.85002 1.26817 0.94924 0.95253 1.04741 1.70409 1.06565 1.36592 1.32420 0.84691 0.78631 0.78950 0.74655 1.18859 1.20363 1.16660 0.86790 0.82203 0.90823 0.87461 0.88418 0.92656 0.90751 0.92441 0.83903 0.91821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -20.07 17.68 20.01 0.35 -19.72 16 2 C 0.24 7.56 12.81 89.44 1.15 8.70 16 3 C -0.02 -0.32 5.13 28.79 0.15 -0.18 16 4 C 0.01 0.28 2.57 -11.30 -0.03 0.25 16 5 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 6 C -0.10 -1.89 5.20 30.82 0.16 -1.73 16 7 C -0.10 -2.33 5.90 30.76 0.18 -2.15 16 8 C -0.04 -1.16 5.87 30.00 0.18 -0.98 16 9 C -0.03 -1.22 6.72 41.40 0.28 -0.94 16 10 C -0.27 -11.25 5.43 -20.09 -0.11 -11.35 16 11 C -0.07 -3.41 10.87 85.12 0.92 -2.49 16 12 N -0.33 -20.20 10.46 -57.04 -0.60 -20.80 16 13 N -0.18 -9.95 3.72 -178.75 -0.67 -10.62 16 14 C -0.36 -19.62 10.05 84.00 0.84 -18.77 16 15 H 0.13 6.39 7.68 -2.91 -0.02 6.36 16 16 C -0.01 -0.37 5.50 84.95 0.47 0.10 16 17 N -0.83 -49.86 11.85 21.66 0.26 -49.60 16 18 Si 1.01 40.20 29.56 68.60 2.03 42.23 16 19 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 20 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 21 H -0.24 -8.77 7.11 99.48 0.71 -8.06 16 22 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 23 H 0.16 1.59 8.14 -2.39 -0.02 1.57 16 24 H 0.07 1.35 8.09 -2.39 -0.02 1.33 16 25 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.05 1.34 8.11 -2.39 -0.02 1.32 16 28 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 30 H 0.14 7.30 5.51 -2.91 -0.02 7.29 16 31 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 Total: -1.00 -79.26 265.32 6.70 -72.56 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: 1.14 Total: 15.49 kcal Atomic # 6 Polarization: -33.73 SS G_CDS: 4.19 Total: -29.54 kcal Atomic # 7 Polarization: -100.09 SS G_CDS: -0.65 Total: -100.74 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 2.03 Total: 42.23 kcal Total: -79.26 6.70 -72.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082825310.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.963 kcal (2) G-P(sol) polarization free energy of solvation -79.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds