Wall clock time and date at job start Mon Mar 30 2020 20:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52996 * 109.47029 * 2 1 4 4 S 1.81400 * 109.47171 * 180.02562 * 3 2 1 5 5 O 1.42100 * 109.47182 * 70.94606 * 4 3 2 6 6 N 1.65608 * 102.99891 * 179.97438 * 4 3 2 7 7 C 1.46504 * 119.99546 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.46584 * 164.43322 * 7 6 4 9 9 C 1.50700 * 115.55699 * 65.11832 * 8 7 6 10 10 H 1.08001 * 120.00119 * 264.73637 * 9 8 7 11 11 C 1.37877 * 120.00090 * 84.72694 * 9 8 7 12 12 N 1.31514 * 119.99834 * 352.56334 * 11 9 8 13 13 Si 1.86801 * 119.99911 * 172.56124 * 11 9 8 14 14 H 1.48497 * 109.47136 * 60.00107 * 13 11 9 15 15 H 1.48496 * 109.47158 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.47027 * 300.00367 * 13 11 9 17 17 C 1.52998 * 117.49776 * 279.44382 * 8 7 6 18 18 C 1.53002 * 117.49781 * 210.78568 * 8 7 6 19 19 H 1.08996 * 109.47307 * 60.00594 * 1 2 3 20 20 H 1.09004 * 109.47019 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47294 * 299.99997 * 1 2 3 22 22 H 1.09000 * 109.47294 * 240.00002 * 2 1 3 23 23 H 1.09003 * 109.47254 * 119.99826 * 2 1 3 24 24 H 1.08995 * 109.47389 * 60.00215 * 3 2 1 25 25 H 1.09003 * 109.46961 * 300.00006 * 3 2 1 26 26 H 0.96995 * 119.99806 * 359.97438 * 6 4 3 27 27 H 1.09000 * 109.47195 * 284.42302 * 7 6 4 28 28 H 1.08994 * 109.47461 * 44.43205 * 7 6 4 29 29 H 0.97004 * 119.99558 * 185.02453 * 12 11 9 30 30 H 1.09001 * 117.49897 * 0.02562 * 17 8 7 31 31 H 1.09005 * 117.50124 * 145.02104 * 17 8 7 32 32 H 1.08998 * 117.49964 * 214.97926 * 18 8 7 33 33 H 1.09005 * 117.49485 * 359.97438 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 16 3.8539 1.4425 -0.0008 5 8 4.3270 1.0053 -1.2674 6 7 4.2263 3.0562 -0.0014 7 6 5.6274 3.4844 -0.0027 8 6 5.7084 4.9623 -0.3902 9 6 5.0776 5.9250 0.5826 10 1 4.0630 6.2615 0.4283 11 6 5.7956 6.3761 1.6698 12 7 6.9737 5.8581 1.9406 13 14 5.0951 7.7231 2.7581 14 1 3.8078 7.2682 3.3421 15 1 6.0547 8.0265 3.8499 16 1 4.8660 8.9457 1.9470 17 6 5.6280 5.3078 -1.8785 18 6 6.9605 5.4298 -1.1350 19 1 -0.3634 0.5137 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.8933 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 1.6766 1.9563 0.8899 25 1 1.6765 1.9563 -0.8900 26 1 3.5169 3.7176 -0.0017 27 1 6.0505 3.3461 0.9922 28 1 6.1888 2.8888 -0.7224 29 1 7.4465 6.1226 2.7452 30 1 5.5170 4.4823 -2.5815 31 1 5.1191 6.2316 -2.1540 32 1 7.3277 6.4336 -0.9216 33 1 7.7267 4.6844 -1.3485 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404074989.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:54:12 Heat of formation + Delta-G solvation = -52.522243 kcal Electronic energy + Delta-G solvation = -14335.367635 eV Core-core repulsion = 11907.984618 eV Total energy + Delta-G solvation = -2427.383017 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 231.103 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.72061 -36.56225 -35.45597 -34.33847 -33.87086 -28.32712 -27.69838 -26.32296 -22.98583 -22.45753 -21.15416 -18.94187 -18.14254 -17.16802 -16.59397 -16.27960 -16.20071 -15.69848 -14.99936 -14.61924 -14.43941 -14.07709 -13.69786 -13.49767 -13.04428 -12.94745 -12.83514 -12.72492 -12.34894 -12.13592 -12.10754 -11.69337 -11.58994 -11.17384 -10.83415 -10.43537 -10.13720 -9.90912 -8.78134 -8.04341 -6.16643 1.05374 1.47582 1.50422 1.56399 1.84756 2.47383 3.18946 3.24537 3.47489 3.97207 4.07011 4.22433 4.41453 4.52087 4.61916 4.62925 4.72603 4.88148 4.90484 4.91752 4.95281 5.18802 5.20896 5.24135 5.39392 5.47251 5.57535 5.77390 5.82113 6.43230 6.60866 6.87605 7.51209 9.03673 Molecular weight = 231.10amu Principal moments of inertia in cm(-1) A = 0.028756 B = 0.007112 C = 0.006217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.477316 B = 3936.327569 C = 4502.637011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.106 4.106 3 C -0.474 4.474 4 S 1.526 4.474 5 O -0.976 6.976 6 N -1.010 6.010 7 C 0.192 3.808 8 C 0.019 3.981 9 C -0.505 4.505 10 H 0.054 0.946 11 C 0.033 3.967 12 N -0.903 5.903 13 Si 0.950 3.050 14 H -0.266 1.266 15 H -0.286 1.286 16 H -0.281 1.281 17 C -0.198 4.198 18 C -0.158 4.158 19 H 0.039 0.961 20 H 0.069 0.931 21 H 0.069 0.931 22 H 0.045 0.955 23 H 0.105 0.895 24 H 0.139 0.861 25 H 0.062 0.938 26 H 0.395 0.605 27 H 0.055 0.945 28 H 0.018 0.982 29 H 0.262 0.738 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.238 -9.300 3.057 13.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.145 4.145 3 C -0.612 4.612 4 S 1.631 4.369 5 O -0.961 6.961 6 N -0.761 5.761 7 C 0.064 3.936 8 C 0.017 3.983 9 C -0.543 4.543 10 H 0.072 0.928 11 C -0.168 4.168 12 N -0.540 5.540 13 Si 0.776 3.224 14 H -0.191 1.191 15 H -0.212 1.212 16 H -0.207 1.207 17 C -0.235 4.235 18 C -0.197 4.197 19 H 0.058 0.942 20 H 0.088 0.912 21 H 0.088 0.912 22 H 0.064 0.936 23 H 0.123 0.877 24 H 0.157 0.843 25 H 0.081 0.919 26 H 0.224 0.776 27 H 0.073 0.927 28 H 0.036 0.964 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.192 -10.116 3.062 13.372 hybrid contribution -1.160 2.218 -1.513 2.925 sum -9.352 -7.897 1.548 12.338 Atomic orbital electron populations 1.21774 0.94357 1.02449 1.01960 1.21155 0.97571 0.92583 1.03198 1.28071 1.21888 1.03700 1.07531 1.69481 0.84143 0.78946 1.04371 1.92835 1.75660 1.76948 1.50629 1.52479 1.10782 1.20978 1.91908 1.20293 0.81348 0.93688 0.98284 1.19222 0.97445 0.92763 0.88846 1.20476 0.99033 1.25762 1.09001 0.92802 1.25590 0.94842 0.97764 0.98588 1.70067 1.14408 1.43815 1.25736 0.85750 0.78445 0.79902 0.78267 1.19126 1.21183 1.20724 1.22905 1.02298 1.01203 0.97082 1.22463 0.90776 1.00614 1.05851 0.94212 0.91187 0.91224 0.93613 0.87689 0.84267 0.91898 0.77610 0.92681 0.96393 0.92871 0.91482 0.90399 0.91594 0.91118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 9.91 71.98 0.71 -1.72 16 2 C -0.11 -2.04 5.94 30.59 0.18 -1.86 16 3 C -0.47 -10.98 5.98 71.98 0.43 -10.55 16 4 S 1.53 44.93 13.98 -56.49 -0.79 44.14 16 5 O -0.98 -42.38 17.94 -148.98 -2.67 -45.05 16 6 N -1.01 -37.88 5.86 -187.49 -1.10 -38.98 16 7 C 0.19 8.62 6.10 86.38 0.53 9.15 16 8 C 0.02 0.94 1.43 -52.93 -0.08 0.86 16 9 C -0.51 -26.16 8.47 25.60 0.22 -25.95 16 10 H 0.05 2.76 7.82 -2.91 -0.02 2.74 16 11 C 0.03 1.73 5.38 84.65 0.46 2.19 16 12 N -0.90 -48.92 12.97 21.45 0.28 -48.64 16 13 Si 0.95 41.12 29.55 68.60 2.03 43.14 16 14 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 15 H -0.29 -12.26 7.11 99.48 0.71 -11.55 16 16 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 17 C -0.20 -9.12 9.96 30.62 0.30 -8.81 16 18 C -0.16 -7.68 9.48 30.62 0.29 -7.39 16 19 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 20 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 21 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.14 2.51 8.14 -2.39 -0.02 2.49 16 25 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.39 14.65 8.18 -96.75 -0.79 13.86 16 27 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 28 H 0.02 0.83 8.04 -2.39 -0.02 0.81 16 29 H 0.26 13.59 8.32 -92.71 -0.77 12.82 16 30 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 31 H 0.08 3.50 8.14 -2.38 -0.02 3.48 16 32 H 0.07 3.36 8.14 -2.39 -0.02 3.34 16 33 H 0.07 3.26 8.14 -2.38 -0.02 3.24 16 Total: -1.00 -68.90 294.34 1.07 -67.83 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: 0.28 Total: 21.65 kcal Atomic # 6 Polarization: -47.13 SS G_CDS: 3.04 Total: -44.09 kcal Atomic # 7 Polarization: -86.80 SS G_CDS: -0.82 Total: -87.62 kcal Atomic # 8 Polarization: -42.38 SS G_CDS: -2.67 Total: -45.05 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.14 kcal Atomic # 16 Polarization: 44.93 SS G_CDS: -0.79 Total: 44.14 kcal Total: -68.90 1.07 -67.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404074989.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.310 kcal (2) G-P(sol) polarization free energy of solvation -68.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds