Wall clock time and date at job start Mon Mar 30 2020 20:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99674 * 2 1 4 4 H 1.48496 * 109.47113 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46908 * 299.99698 * 3 2 1 6 6 H 1.48497 * 109.47432 * 59.99683 * 3 2 1 7 7 C 1.37868 * 120.00315 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00180 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00123 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.45513 * 60.02149 * 9 7 2 11 11 C 1.53037 * 109.45893 * 300.05030 * 9 7 2 12 12 C 1.53122 * 109.27841 * 180.80438 * 11 9 7 13 13 C 1.53120 * 109.15888 * 57.65389 * 12 11 9 14 14 C 1.53039 * 109.27962 * 302.34396 * 13 12 11 15 15 N 1.46847 * 109.46383 * 179.97438 * 9 7 2 16 16 C 1.38993 * 110.99703 * 305.85245 * 15 9 7 17 17 C 1.39333 * 120.09882 * 291.85579 * 16 15 9 18 18 N 1.31924 * 119.89053 * 179.70063 * 17 16 15 19 19 C 1.32269 * 120.08881 * 0.54021 * 18 17 16 20 20 C 1.38163 * 120.19211 * 359.48071 * 19 18 17 21 21 N 1.32248 * 120.10760 * 0.23561 * 20 19 18 22 22 H 0.96995 * 120.00521 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.50355 * 60.86171 * 11 9 7 24 24 H 1.09002 * 109.53420 * 300.75952 * 11 9 7 25 25 H 1.09002 * 109.52156 * 297.75461 * 12 11 9 26 26 H 1.08996 * 109.57702 * 177.58977 * 12 11 9 27 27 H 1.09001 * 109.50412 * 182.41114 * 13 12 11 28 28 H 1.08994 * 109.53711 * 62.30963 * 13 12 11 29 29 H 1.08995 * 109.46657 * 299.16602 * 14 13 12 30 30 H 1.08999 * 109.45713 * 179.18688 * 14 13 12 31 31 H 1.08001 * 120.05306 * 359.97438 * 17 16 15 32 32 H 1.08002 * 119.90807 * 179.76648 * 19 18 17 33 33 H 1.07999 * 119.94631 * 180.25988 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6252 -2.5570 -0.8899 11 6 0.3699 -2.5791 1.2492 12 6 -0.3782 -3.9151 1.2553 13 6 0.6374 -5.0600 1.2066 14 6 1.5108 -4.9081 -0.0408 15 7 2.2056 -3.6151 0.0005 16 6 3.1069 -3.4996 -1.0512 17 6 2.6701 -3.6513 -2.3656 18 7 3.5280 -3.5350 -3.3611 19 6 4.8028 -3.2853 -3.1121 20 6 5.2399 -3.1346 -1.8101 21 7 4.3855 -3.2441 -0.8066 22 1 -0.4851 0.8400 0.0004 23 1 -0.3487 -1.7596 1.2406 24 1 0.9934 -2.5072 2.1405 25 1 -1.0316 -3.9706 0.3845 26 1 -0.9746 -3.9956 2.1640 27 1 0.1098 -6.0131 1.1675 28 1 1.2655 -5.0281 2.0968 29 1 0.8837 -4.9547 -0.9311 30 1 2.2444 -5.7137 -0.0708 31 1 1.6301 -3.8594 -2.5693 32 1 5.5033 -3.1944 -3.9291 33 1 6.2809 -2.9267 -1.6115 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259964708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:54:11 Heat of formation + Delta-G solvation = 56.976206 kcal Electronic energy + Delta-G solvation = -16773.524133 eV Core-core repulsion = 14220.426646 eV Total energy + Delta-G solvation = -2553.097487 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.122 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.64758 -38.06062 -33.84526 -33.05911 -32.85681 -29.63817 -29.28492 -25.51252 -24.17543 -23.80141 -21.98317 -21.32141 -18.92068 -17.12931 -16.85244 -16.42955 -15.70612 -14.97146 -14.28150 -14.12281 -13.69580 -13.35921 -13.00010 -12.68177 -12.50277 -12.19735 -11.87178 -11.02333 -10.99784 -10.82732 -10.67694 -10.49672 -10.31406 -10.11382 -9.78752 -9.58790 -9.17472 -8.74169 -8.55609 -8.45638 -7.37875 -6.10511 -4.14900 1.31342 1.73103 3.25483 3.33445 3.39575 4.08872 4.25159 4.39514 4.72888 5.02396 5.16903 5.23404 5.42154 5.51135 5.57874 5.74548 5.83661 5.88612 6.02172 6.22605 6.24714 6.47969 6.62965 6.69858 6.78887 6.93904 7.08175 7.36661 7.51104 7.75018 7.78768 8.11221 8.14641 8.30866 8.55847 8.93121 9.50581 10.95713 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.017381 B = 0.013630 C = 0.008567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.524912 B = 2053.739178 C = 3267.560739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.064 3.936 3 Si 0.895 3.105 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.281 1.281 7 C -0.512 4.512 8 H 0.067 0.933 9 C 0.229 3.771 10 H 0.008 0.992 11 C -0.105 4.105 12 C -0.124 4.124 13 C -0.110 4.110 14 C 0.066 3.934 15 N -0.500 5.500 16 C 0.321 3.679 17 C 0.022 3.978 18 N -0.436 5.436 19 C 0.012 3.988 20 C 0.059 3.941 21 N -0.428 5.428 22 H 0.262 0.738 23 H 0.099 0.901 24 H 0.047 0.953 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.031 0.969 30 H 0.060 0.940 31 H 0.158 0.842 32 H 0.160 0.840 33 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.732 -7.733 -1.999 8.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.138 4.138 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.207 1.207 7 C -0.550 4.550 8 H 0.085 0.915 9 C 0.126 3.874 10 H 0.025 0.975 11 C -0.144 4.144 12 C -0.162 4.162 13 C -0.148 4.148 14 C -0.062 4.062 15 N -0.224 5.224 16 C 0.088 3.912 17 C -0.143 4.143 18 N -0.151 5.151 19 C -0.147 4.147 20 C -0.101 4.101 21 N -0.145 5.145 22 H 0.072 0.928 23 H 0.117 0.883 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.175 0.825 32 H 0.177 0.823 33 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.838 -7.564 -1.542 8.621 hybrid contribution 0.030 1.013 -0.727 1.247 sum 3.867 -6.551 -2.269 7.939 Atomic orbital electron populations 1.69867 1.05811 1.26668 1.50507 1.24873 0.94882 0.99133 0.94876 0.86474 0.80253 0.83393 0.77619 1.19725 1.21064 1.20739 1.21245 0.93698 0.89560 1.50495 0.91504 1.19375 0.87769 0.85938 0.94345 0.97475 1.21674 0.98963 0.95394 0.98339 1.21716 0.97388 0.96800 1.00313 1.21540 0.97379 0.98003 0.97857 1.22040 0.95926 0.90464 0.97759 1.58891 1.18641 1.03889 1.41013 1.20425 0.90637 0.90578 0.89521 1.24152 1.00321 0.99240 0.90554 1.68203 1.02824 1.08358 1.35684 1.23456 0.93520 1.00218 0.97503 1.23593 1.00258 0.96732 0.89543 1.68178 1.02667 1.08445 1.35171 0.92833 0.88278 0.93380 0.93094 0.93232 0.92545 0.91423 0.95110 0.92125 0.82495 0.82288 0.82140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.76 11.32 55.43 0.63 -24.14 16 2 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.66 16 4 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.51 -14.07 8.02 -34.44 -0.28 -14.35 16 8 H 0.07 1.93 6.80 -52.48 -0.36 1.57 16 9 C 0.23 5.63 1.60 -68.87 -0.11 5.52 16 10 H 0.01 0.20 7.77 -51.93 -0.40 -0.20 16 11 C -0.11 -2.42 5.14 -26.65 -0.14 -2.56 16 12 C -0.12 -2.30 6.00 -26.61 -0.16 -2.46 16 13 C -0.11 -1.81 6.09 -26.65 -0.16 -1.97 16 14 C 0.07 1.17 5.06 -3.83 -0.02 1.15 16 15 N -0.50 -10.91 4.55 -166.86 -0.76 -11.67 16 16 C 0.32 6.85 4.40 -154.73 -0.68 6.17 16 17 C 0.02 0.45 9.91 -17.10 -0.17 0.28 16 18 N -0.44 -8.11 10.49 -12.88 -0.14 -8.24 16 19 C 0.01 0.18 11.21 -17.39 -0.19 -0.01 16 20 C 0.06 0.99 11.21 -17.40 -0.20 0.79 16 21 N -0.43 -8.93 10.07 -12.24 -0.12 -9.05 16 22 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 23 H 0.10 2.53 6.09 -51.93 -0.32 2.21 16 24 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.03 0.53 7.14 -51.93 -0.37 0.16 16 30 H 0.06 1.00 8.10 -51.93 -0.42 0.58 16 31 H 0.16 2.96 7.13 -52.49 -0.37 2.58 16 32 H 0.16 1.84 8.06 -52.49 -0.42 1.41 16 33 H 0.16 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 269.41 15.07 4.06 4.06 Total: -1.00 -30.10 269.41 -7.89 -37.99 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -4.34 Total: 0.16 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -2.20 Total: -5.77 kcal Atomic # 7 Polarization: -52.71 SS G_CDS: -0.39 Total: -53.10 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.10 -7.89 -37.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259964708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.963 kcal (2) G-P(sol) polarization free energy of solvation -30.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds