Wall clock time and date at job start Mon Mar 30 2020 20:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99674 * 2 1 4 4 H 1.48496 * 109.47113 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46908 * 299.99698 * 3 2 1 6 6 H 1.48497 * 109.47432 * 59.99683 * 3 2 1 7 7 C 1.37868 * 120.00315 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00180 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00123 * 0.02562 * 7 2 1 10 10 H 1.08995 * 109.45513 * 60.02149 * 9 7 2 11 11 C 1.53037 * 109.45893 * 300.05030 * 9 7 2 12 12 C 1.53122 * 109.27841 * 180.80438 * 11 9 7 13 13 C 1.53120 * 109.15888 * 57.65389 * 12 11 9 14 14 C 1.53039 * 109.27962 * 302.34396 * 13 12 11 15 15 N 1.46847 * 109.46383 * 179.97438 * 9 7 2 16 16 C 1.38993 * 110.99703 * 305.85245 * 15 9 7 17 17 C 1.39333 * 120.09882 * 291.85579 * 16 15 9 18 18 N 1.31924 * 119.89053 * 179.70063 * 17 16 15 19 19 C 1.32269 * 120.08881 * 0.54021 * 18 17 16 20 20 C 1.38163 * 120.19211 * 359.48071 * 19 18 17 21 21 N 1.32248 * 120.10760 * 0.23561 * 20 19 18 22 22 H 0.96995 * 120.00521 * 359.97438 * 1 2 3 23 23 H 1.08997 * 109.50355 * 60.86171 * 11 9 7 24 24 H 1.09002 * 109.53420 * 300.75952 * 11 9 7 25 25 H 1.09002 * 109.52156 * 297.75461 * 12 11 9 26 26 H 1.08996 * 109.57702 * 177.58977 * 12 11 9 27 27 H 1.09001 * 109.50412 * 182.41114 * 13 12 11 28 28 H 1.08994 * 109.53711 * 62.30963 * 13 12 11 29 29 H 1.08995 * 109.46657 * 299.16602 * 14 13 12 30 30 H 1.08999 * 109.45713 * 179.18688 * 14 13 12 31 31 H 1.08001 * 120.05306 * 359.97438 * 17 16 15 32 32 H 1.08002 * 119.90807 * 179.76648 * 19 18 17 33 33 H 1.07999 * 119.94631 * 180.25988 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6252 -2.5570 -0.8899 11 6 0.3699 -2.5791 1.2492 12 6 -0.3782 -3.9151 1.2553 13 6 0.6374 -5.0600 1.2066 14 6 1.5108 -4.9081 -0.0408 15 7 2.2056 -3.6151 0.0005 16 6 3.1069 -3.4996 -1.0512 17 6 2.6701 -3.6513 -2.3656 18 7 3.5280 -3.5350 -3.3611 19 6 4.8028 -3.2853 -3.1121 20 6 5.2399 -3.1346 -1.8101 21 7 4.3855 -3.2441 -0.8066 22 1 -0.4851 0.8400 0.0004 23 1 -0.3487 -1.7596 1.2406 24 1 0.9934 -2.5072 2.1405 25 1 -1.0316 -3.9706 0.3845 26 1 -0.9746 -3.9956 2.1640 27 1 0.1098 -6.0131 1.1675 28 1 1.2655 -5.0281 2.0968 29 1 0.8837 -4.9547 -0.9311 30 1 2.2444 -5.7137 -0.0708 31 1 1.6301 -3.8594 -2.5693 32 1 5.5033 -3.1944 -3.9291 33 1 6.2809 -2.9267 -1.6115 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259964708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:54:11 Heat of formation + Delta-G solvation = 36.558265 kcal Electronic energy + Delta-G solvation = -16774.409521 eV Core-core repulsion = 14220.426646 eV Total energy + Delta-G solvation = -2553.982875 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 233.122 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.10361 -39.63373 -35.33002 -35.01739 -34.34965 -31.42456 -30.72298 -27.40105 -25.66118 -25.31650 -23.57833 -22.95620 -20.51481 -18.87869 -18.32780 -17.95452 -17.43568 -16.71607 -15.93317 -15.58037 -15.16530 -15.01593 -14.54730 -14.25590 -14.13078 -13.71186 -13.54196 -12.92599 -12.68700 -12.46883 -12.42133 -12.08415 -12.01960 -11.86639 -11.47850 -11.18524 -10.93907 -10.55259 -10.34766 -9.96169 -8.98753 -8.18460 -6.29215 -0.08763 0.29303 1.31820 1.34459 1.45385 2.33936 2.64961 2.86358 3.10067 3.38913 3.64090 3.83753 4.04233 4.12003 4.28368 4.33682 4.45151 4.52335 4.58425 4.75754 4.77358 4.97778 5.07390 5.18089 5.25397 5.36215 5.45750 5.61257 5.66808 5.73863 6.16951 6.21905 6.44205 6.64361 6.82057 7.08501 7.38907 8.86381 Molecular weight = 233.12amu Principal moments of inertia in cm(-1) A = 0.017381 B = 0.013630 C = 0.008567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.524912 B = 2053.739178 C = 3267.560739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.021 3.979 3 Si 0.949 3.051 4 H -0.277 1.277 5 H -0.279 1.279 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.049 0.951 9 C 0.239 3.761 10 H -0.023 1.023 11 C -0.100 4.100 12 C -0.118 4.118 13 C -0.103 4.103 14 C 0.061 3.939 15 N -0.511 5.511 16 C 0.293 3.707 17 C 0.008 3.992 18 N -0.450 5.450 19 C 0.026 3.974 20 C 0.061 3.939 21 N -0.462 5.462 22 H 0.264 0.736 23 H 0.069 0.931 24 H 0.032 0.968 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.096 0.904 28 H 0.064 0.936 29 H 0.035 0.965 30 H 0.076 0.924 31 H 0.155 0.845 32 H 0.210 0.790 33 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.003 -8.461 -2.486 10.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.179 4.179 3 Si 0.775 3.225 4 H -0.202 1.202 5 H -0.205 1.205 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.067 0.933 9 C 0.134 3.866 10 H -0.005 1.005 11 C -0.139 4.139 12 C -0.155 4.155 13 C -0.140 4.140 14 C -0.065 4.065 15 N -0.235 5.235 16 C 0.062 3.938 17 C -0.155 4.155 18 N -0.165 5.165 19 C -0.134 4.134 20 C -0.100 4.100 21 N -0.179 5.179 22 H 0.073 0.927 23 H 0.088 0.912 24 H 0.050 0.950 25 H 0.069 0.931 26 H 0.089 0.911 27 H 0.114 0.886 28 H 0.083 0.917 29 H 0.053 0.947 30 H 0.094 0.906 31 H 0.172 0.828 32 H 0.226 0.774 33 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 5.075 -8.316 -2.020 9.949 hybrid contribution -0.215 1.230 -0.660 1.413 sum 4.861 -7.085 -2.680 9.000 Atomic orbital electron populations 1.69972 1.06670 1.27294 1.50995 1.25541 0.95696 1.01838 0.94817 0.85637 0.78754 0.80159 0.77931 1.20166 1.20521 1.19895 1.21426 0.93005 0.91401 1.50565 0.93320 1.19066 0.87840 0.86213 0.93466 1.00527 1.21490 0.98212 0.97316 0.96879 1.21630 0.97629 0.94895 1.01365 1.21534 0.96716 0.98834 0.96930 1.22204 0.96474 0.89133 0.98715 1.58807 1.18393 1.04424 1.41909 1.20469 0.91000 0.92537 0.89812 1.24051 1.00662 1.00311 0.90474 1.68255 1.04035 1.08904 1.35283 1.24283 0.93043 0.97197 0.98837 1.24378 1.01544 0.94920 0.89176 1.68141 1.03065 1.09339 1.37364 0.92710 0.91217 0.94959 0.93129 0.91102 0.88598 0.91701 0.94711 0.90557 0.82816 0.77373 0.77844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.89 11.32 21.44 0.24 -51.65 16 2 C 0.02 1.16 5.30 84.65 0.45 1.61 16 3 Si 0.95 44.99 29.54 68.60 2.03 47.01 16 4 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 7 C -0.53 -29.73 8.02 25.60 0.21 -29.52 16 8 H 0.05 2.88 6.80 -2.91 -0.02 2.86 16 9 C 0.24 12.10 1.60 44.19 0.07 12.17 16 10 H -0.02 -1.26 7.77 -2.39 -0.02 -1.28 16 11 C -0.10 -4.74 5.14 30.65 0.16 -4.59 16 12 C -0.12 -4.25 6.00 30.68 0.18 -4.07 16 13 C -0.10 -3.19 6.09 30.65 0.19 -3.00 16 14 C 0.06 2.16 5.06 86.33 0.44 2.59 16 15 N -0.51 -22.59 4.55 -681.81 -3.10 -25.69 16 16 C 0.29 12.55 4.40 133.04 0.58 13.14 16 17 C 0.01 0.32 9.91 84.94 0.84 1.16 16 18 N -0.45 -16.12 10.49 -194.67 -2.04 -18.16 16 19 C 0.03 0.74 11.21 84.61 0.95 1.69 16 20 C 0.06 1.87 11.21 84.61 0.95 2.82 16 21 N -0.46 -18.95 10.07 -192.64 -1.94 -20.89 16 22 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 23 H 0.07 3.68 6.09 -2.39 -0.01 3.67 16 24 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.03 1.19 7.14 -2.39 -0.02 1.17 16 30 H 0.08 2.42 8.10 -2.39 -0.02 2.40 16 31 H 0.15 6.00 7.13 -2.91 -0.02 5.98 16 32 H 0.21 3.75 8.06 -2.91 -0.02 3.73 16 33 H 0.20 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -67.08 269.41 1.29 -65.78 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 1.10 Total: 9.60 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: 5.01 Total: -6.00 kcal Atomic # 7 Polarization: -109.56 SS G_CDS: -6.84 Total: -116.40 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -67.08 1.29 -65.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259964708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.339 kcal (2) G-P(sol) polarization free energy of solvation -67.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds