Wall clock time and date at job start Mon Mar 30 2020 20:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36700 * 126.39166 * 2 1 4 4 N 1.37855 * 125.08296 * 0.02562 * 3 2 1 5 5 C 1.36953 * 119.99992 * 179.72053 * 4 3 2 6 6 H 1.08002 * 120.00394 * 359.97438 * 5 4 3 7 7 C 1.38795 * 119.99656 * 179.71929 * 5 4 3 8 8 N 1.31554 * 120.00355 * 0.27514 * 7 5 4 9 9 Si 1.86803 * 119.99794 * 180.27678 * 7 5 4 10 10 H 1.48496 * 109.47491 * 59.99929 * 9 7 5 11 11 H 1.48498 * 109.47326 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46993 * 300.00035 * 9 7 5 13 13 N 1.31021 * 109.83316 * 179.73332 * 3 2 1 14 14 C 1.35753 * 109.62291 * 0.26659 * 13 3 2 15 15 C 1.38406 * 126.38343 * 180.18742 * 2 1 3 16 16 C 1.38715 * 133.88098 * 359.92409 * 15 2 1 17 17 C 1.37966 * 119.89564 * 180.36377 * 16 15 2 18 18 C 1.38711 * 120.47073 * 0.02562 * 17 16 15 19 19 C 1.37870 * 120.48744 * 359.95538 * 18 17 16 20 20 F 1.35097 * 120.13441 * 180.02562 * 19 18 17 21 21 H 1.09007 * 109.46835 * 90.02178 * 1 2 3 22 22 H 1.08997 * 109.47815 * 210.02528 * 1 2 3 23 23 H 1.08998 * 109.46927 * 330.03057 * 1 2 3 24 24 H 0.97000 * 119.99631 * 359.71432 * 4 3 2 25 25 H 0.96996 * 120.00417 * 179.97438 * 8 7 5 26 26 H 1.07993 * 120.05189 * 0.33701 * 16 15 2 27 27 H 1.07994 * 119.76221 * 180.02562 * 17 16 15 28 28 H 1.08005 * 119.75795 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2760 1.1004 0.0000 4 7 1.8380 2.4075 0.0005 5 6 2.7450 3.4336 0.0062 6 1 3.8034 3.2189 0.0108 7 6 2.3040 4.7496 0.0009 8 7 1.0147 5.0114 -0.0043 9 14 3.5411 6.1493 0.0009 10 1 4.3976 6.0530 -1.2084 11 1 2.8200 7.4474 -0.0048 12 1 4.3894 6.0601 1.2165 13 7 3.5319 0.7270 0.0057 14 6 3.6044 -0.6286 0.0038 15 6 2.2859 -1.1143 -0.0036 16 6 2.0514 -2.4814 -0.0068 17 6 3.1139 -3.3614 -0.0025 18 6 4.4182 -2.8894 0.0055 19 6 4.6716 -1.5341 0.0083 20 9 5.9447 -1.0822 0.0155 21 1 -0.3633 -0.0004 -1.0277 22 1 -0.3634 -0.8897 0.5142 23 1 -0.3633 0.8902 0.5134 24 1 0.8874 2.6004 -0.0033 25 1 0.7065 5.9311 -0.0077 26 1 1.0386 -2.8564 -0.0121 27 1 2.9288 -4.4254 -0.0054 28 1 5.2414 -3.5886 0.0092 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260626708.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:54:09 Heat of formation + Delta-G solvation = 18.128700 kcal Electronic energy + Delta-G solvation = -15869.463490 eV Core-core repulsion = 13028.076571 eV Total energy + Delta-G solvation = -2841.386919 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 235.082 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.59667 -42.73304 -38.38081 -36.63292 -34.89263 -33.50561 -30.78756 -29.42731 -27.79437 -26.75675 -23.28886 -23.08710 -21.31582 -20.05283 -18.53949 -18.31561 -17.31780 -16.97621 -16.59811 -16.24053 -16.14148 -16.08380 -15.44699 -14.80512 -14.06499 -13.95493 -13.61183 -13.46178 -13.30377 -12.71131 -12.68636 -12.52359 -12.46032 -12.12148 -11.60603 -11.05598 -10.58852 -10.43468 -8.97611 -8.51406 -8.50810 -5.84112 0.13111 0.60564 1.39108 1.43322 1.48191 1.66109 2.08141 2.32389 2.90432 2.95598 3.15355 3.49431 3.70915 3.92730 4.12260 4.37073 4.41513 4.53479 4.61233 4.74882 4.91853 5.20683 5.34550 5.45542 5.57698 5.62341 5.68716 6.08833 6.33524 6.69337 7.04141 7.31606 7.75079 8.67505 Molecular weight = 235.08amu Principal moments of inertia in cm(-1) A = 0.032802 B = 0.007362 C = 0.006032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.405018 B = 3802.307201 C = 4640.559083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.530 5.530 3 C 0.510 3.490 4 N -0.546 5.546 5 C -0.303 4.303 6 H 0.088 0.912 7 C -0.018 4.018 8 N -0.928 5.928 9 Si 0.998 3.002 10 H -0.272 1.272 11 H -0.271 1.271 12 H -0.272 1.272 13 N -0.616 5.616 14 C 0.024 3.976 15 C 0.039 3.961 16 C -0.101 4.101 17 C -0.103 4.103 18 C -0.141 4.141 19 C 0.066 3.934 20 F -0.158 7.158 21 H 0.079 0.921 22 H 0.115 0.885 23 H 0.076 0.924 24 H 0.407 0.593 25 H 0.278 0.722 26 H 0.157 0.843 27 H 0.181 0.819 28 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.013 -14.092 0.053 14.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.232 5.232 3 C 0.156 3.844 4 N -0.171 5.171 5 C -0.433 4.433 6 H 0.106 0.894 7 C -0.217 4.217 8 N -0.568 5.568 9 Si 0.821 3.179 10 H -0.198 1.198 11 H -0.195 1.195 12 H -0.197 1.197 13 N -0.352 5.352 14 C -0.097 4.097 15 C -0.069 4.069 16 C -0.123 4.123 17 C -0.123 4.123 18 C -0.162 4.162 19 C 0.043 3.957 20 F -0.137 7.137 21 H 0.098 0.902 22 H 0.133 0.867 23 H 0.095 0.905 24 H 0.244 0.756 25 H 0.087 0.913 26 H 0.175 0.825 27 H 0.198 0.802 28 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.477 -13.135 0.061 13.367 hybrid contribution -0.301 1.045 -0.018 1.088 sum -2.778 -12.090 0.043 12.405 Atomic orbital electron populations 1.22085 0.74422 1.05410 1.04070 1.45016 1.07515 1.03057 1.67609 1.19851 0.85155 0.83126 0.96282 1.39562 1.08925 0.97877 1.70689 1.19640 0.90213 0.84663 1.48830 0.89392 1.25976 0.98779 0.99962 0.97008 1.69699 1.14085 1.21976 1.51072 0.84902 0.77424 0.76569 0.78968 1.19757 1.19528 1.19741 1.70674 1.16048 1.10551 1.37950 1.19352 0.93839 0.90720 1.05771 1.18747 0.89042 0.90025 1.09115 1.20323 1.01836 0.86639 1.03454 1.20978 0.89320 1.00962 1.01087 1.21092 1.00300 0.90742 1.04051 1.17265 0.75993 0.92231 1.10190 1.91369 1.37295 1.90492 1.94579 0.90220 0.86704 0.90541 0.75592 0.91296 0.82501 0.80222 0.82055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.15 10.96 127.77 1.40 3.55 15 2 N -0.53 -20.56 3.23 -541.24 -1.75 -22.31 15 3 C 0.51 25.22 8.40 260.44 2.19 27.41 15 4 N -0.55 -28.36 5.40 -192.88 -1.04 -29.41 15 5 C -0.30 -17.10 9.78 84.03 0.82 -16.27 15 6 H 0.09 5.25 7.33 -2.91 -0.02 5.23 15 7 C -0.02 -0.94 5.50 84.87 0.47 -0.48 15 8 N -0.93 -49.81 13.05 21.64 0.28 -49.53 15 9 Si 1.00 43.29 29.55 68.60 2.03 45.32 15 10 H -0.27 -11.73 7.11 99.48 0.71 -11.03 15 11 H -0.27 -11.06 7.11 99.48 0.71 -10.36 15 12 H -0.27 -11.72 7.11 99.48 0.71 -11.01 15 13 N -0.62 -33.05 10.51 -190.11 -2.00 -35.05 15 14 C 0.02 1.11 7.20 39.51 0.28 1.40 15 15 C 0.04 1.44 6.87 38.77 0.27 1.71 15 16 C -0.10 -2.61 10.04 22.32 0.22 -2.39 15 17 C -0.10 -2.27 10.03 22.32 0.22 -2.05 15 18 C -0.14 -3.92 9.99 22.30 0.22 -3.70 15 19 C 0.07 2.62 7.34 22.60 0.17 2.79 15 20 F -0.16 -6.81 17.27 44.97 0.78 -6.03 15 21 H 0.08 1.87 8.14 -2.38 -0.02 1.85 15 22 H 0.11 2.15 8.14 -2.39 -0.02 2.14 15 23 H 0.08 2.08 7.45 -2.39 -0.02 2.06 15 24 H 0.41 20.10 7.06 -92.71 -0.65 19.45 15 25 H 0.28 14.03 8.31 -92.71 -0.77 13.26 15 26 H 0.16 2.77 8.06 -2.91 -0.02 2.74 15 27 H 0.18 2.17 8.06 -2.91 -0.02 2.15 15 28 H 0.16 3.35 8.06 -2.91 -0.02 3.32 15 Total: -1.00 -70.33 257.07 5.11 -65.23 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 0.55 Total: 19.81 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 6.26 Total: 11.96 kcal Atomic # 7 Polarization: -131.79 SS G_CDS: -4.51 Total: -136.29 kcal Atomic # 9 Polarization: -6.81 SS G_CDS: 0.78 Total: -6.03 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -70.33 5.11 -65.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260626708.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.354 kcal (2) G-P(sol) polarization free energy of solvation -70.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds