Wall clock time and date at job start Mon Mar 30 2020 20:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38552 * 119.98731 * 2 1 4 4 C 1.39263 * 119.82288 * 180.27480 * 3 2 1 5 5 C 1.38544 * 119.83404 * 359.73982 * 4 3 2 6 6 C 1.38241 * 120.02518 * 0.02635 * 5 4 3 7 7 C 1.38237 * 119.98454 * 179.78333 * 2 1 3 8 8 C 1.50703 * 119.92713 * 0.02562 * 7 2 1 9 9 H 1.09002 * 109.47152 * 39.72360 * 8 7 2 10 10 N 1.46899 * 109.47107 * 159.72272 * 8 7 2 11 11 C 1.50699 * 109.47227 * 279.72476 * 8 7 2 12 12 H 1.07999 * 120.00019 * 359.97438 * 11 8 7 13 13 C 1.37877 * 120.00129 * 180.02562 * 11 8 7 14 14 N 1.31519 * 119.99723 * 359.97438 * 13 11 8 15 15 Si 1.86803 * 119.99900 * 179.97438 * 13 11 8 16 16 H 1.48501 * 109.47147 * 90.00197 * 15 13 11 17 17 H 1.48499 * 109.46797 * 209.99607 * 15 13 11 18 18 H 1.48500 * 109.47032 * 329.99738 * 15 13 11 19 19 O 1.36506 * 108.63539 * 179.74282 * 4 3 2 20 20 C 1.43986 * 105.48730 * 17.27497 * 19 4 3 21 21 O 1.36498 * 131.53349 * 359.94352 * 3 2 1 22 22 H 1.09004 * 109.47184 * 270.21788 * 1 2 3 23 23 H 1.09006 * 109.46901 * 30.21441 * 1 2 3 24 24 H 1.09000 * 109.46723 * 150.21290 * 1 2 3 25 25 H 1.07997 * 119.98669 * 180.02562 * 5 4 3 26 26 H 1.07999 * 119.92535 * 180.02562 * 6 5 4 27 27 H 1.00903 * 110.99833 * 59.99796 * 10 8 7 28 28 H 1.00901 * 111.00152 * 183.95033 * 10 8 7 29 29 H 0.97003 * 119.99231 * 179.97438 * 14 13 11 30 30 H 1.08996 * 110.56785 * 91.44305 * 20 19 4 31 31 H 1.08998 * 110.57501 * 214.31557 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1995 1.2000 0.0000 4 6 3.5921 1.1961 -0.0058 5 6 4.2779 -0.0077 -0.0061 6 6 3.5803 -1.2012 -0.0012 7 6 2.1979 -1.1973 0.0045 8 6 1.4423 -2.5013 0.0089 9 1 0.5765 -2.4218 -0.6485 10 7 2.3211 -3.5780 -0.4669 11 6 0.9823 -2.8107 1.4102 12 1 1.2142 -2.1313 2.2170 13 6 0.2662 -3.9616 1.6624 14 7 -0.0157 -4.7892 0.6799 15 14 -0.3034 -4.3454 3.3996 16 1 -1.6486 -3.7565 3.6209 17 1 -0.3709 -5.8173 3.5845 18 1 0.6565 -3.7675 4.3743 19 8 4.0320 2.4883 -0.0103 20 6 2.9033 3.2801 0.4048 21 8 1.7669 2.4946 -0.0010 22 1 -0.3634 0.0039 1.0277 23 1 -0.3633 0.8881 -0.5172 24 1 -0.3633 -0.8919 -0.5105 25 1 5.3579 -0.0137 -0.0101 26 1 4.1166 -2.1387 -0.0010 27 1 3.1319 -3.6718 0.1264 28 1 1.8196 -4.4509 -0.5345 29 1 -0.5192 -5.5991 0.8575 30 1 2.9082 3.4164 1.4862 31 1 2.9039 4.2442 -0.1038 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260835049.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:54:22 Heat of formation + Delta-G solvation = -41.262410 kcal Electronic energy + Delta-G solvation = -16606.148647 eV Core-core repulsion = 13853.353890 eV Total energy + Delta-G solvation = -2752.794757 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.70173 -38.04714 -35.90492 -34.35277 -31.90498 -31.40585 -28.72160 -26.36216 -26.00851 -25.36089 -23.12500 -21.24725 -20.36693 -17.27688 -16.95767 -16.68081 -16.50716 -15.87068 -14.92124 -14.42079 -13.89642 -13.68635 -13.16816 -12.91827 -12.68770 -12.62487 -12.49294 -11.82431 -11.68189 -11.53736 -11.14896 -10.93367 -10.83244 -10.44864 -10.36880 -9.87730 -9.60166 -8.69080 -7.96102 -7.45984 -7.22953 -6.13937 -4.30561 1.80368 1.86068 3.17785 3.19738 3.27397 3.31205 3.81513 4.20448 4.35581 4.89544 5.01901 5.05621 5.09975 5.56060 5.68040 5.72699 5.92658 5.96923 6.19954 6.32627 6.48875 6.56201 6.72007 6.93037 6.99190 7.02929 7.13610 7.64958 7.69923 7.72002 8.02831 8.61399 8.87221 9.05109 9.41215 10.83579 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.035154 B = 0.007466 C = 0.006941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.308593 B = 3749.459190 C = 4032.967317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.063 4.063 3 C 0.021 3.979 4 C 0.000 4.000 5 C -0.109 4.109 6 C -0.102 4.102 7 C -0.020 4.020 8 C 0.243 3.757 9 H 0.057 0.943 10 N -0.851 5.851 11 C -0.540 4.540 12 H 0.056 0.944 13 C 0.068 3.932 14 N -0.893 5.893 15 Si 0.896 3.104 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.274 1.274 19 O -0.318 6.318 20 C 0.214 3.786 21 O -0.313 6.313 22 H 0.071 0.929 23 H 0.051 0.949 24 H 0.080 0.920 25 H 0.124 0.876 26 H 0.138 0.862 27 H 0.312 0.688 28 H 0.357 0.643 29 H 0.266 0.734 30 H 0.074 0.926 31 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.420 9.535 -0.133 10.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.065 4.065 3 C -0.023 4.023 4 C -0.044 4.044 5 C -0.127 4.127 6 C -0.120 4.120 7 C -0.021 4.021 8 C 0.134 3.866 9 H 0.074 0.926 10 N -0.382 5.382 11 C -0.580 4.580 12 H 0.074 0.926 13 C -0.135 4.135 14 N -0.532 5.532 15 Si 0.723 3.277 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.199 1.199 19 O -0.235 6.235 20 C 0.102 3.898 21 O -0.230 6.230 22 H 0.090 0.910 23 H 0.070 0.930 24 H 0.099 0.901 25 H 0.142 0.858 26 H 0.156 0.844 27 H 0.122 0.878 28 H 0.174 0.826 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.377 9.989 -0.962 10.948 hybrid contribution -0.510 -0.361 2.068 2.161 sum 3.867 9.628 1.106 10.434 Atomic orbital electron populations 1.20651 0.90449 1.02186 1.02650 1.18783 0.96677 0.88097 1.02907 1.19538 0.91386 0.84900 1.06430 1.19620 0.91564 0.85199 1.07978 1.19995 0.99575 0.88372 1.04806 1.20806 0.94096 0.96591 1.00511 1.20199 0.93402 0.95224 0.93287 1.17985 0.90351 0.83733 0.94567 0.92565 1.59562 1.11321 1.12226 1.55089 1.21739 1.35415 1.06551 0.94284 0.92560 1.24997 0.95085 0.96086 0.97335 1.69738 1.39905 1.12387 1.31168 0.86527 0.79220 0.77431 0.84474 1.20498 1.21128 1.19882 1.87262 1.35824 1.15032 1.85411 1.25424 0.71842 0.93095 0.99436 1.87279 1.35316 1.14954 1.85403 0.91025 0.92956 0.90124 0.85840 0.84395 0.87808 0.82611 0.92382 0.90800 0.86091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.98 9.41 36.01 0.34 -1.64 16 2 C -0.06 -1.31 5.88 -104.51 -0.61 -1.92 16 3 C 0.02 0.41 6.82 -39.09 -0.27 0.14 16 4 C 0.00 0.00 7.15 -39.09 -0.28 -0.28 16 5 C -0.11 -1.93 10.06 -39.47 -0.40 -2.33 16 6 C -0.10 -1.96 9.25 -39.58 -0.37 -2.32 16 7 C -0.02 -0.43 5.03 -104.62 -0.53 -0.96 16 8 C 0.24 5.78 2.40 -70.02 -0.17 5.62 16 9 H 0.06 1.46 6.39 -51.93 -0.33 1.13 16 10 N -0.85 -19.31 8.66 -6.65 -0.06 -19.37 16 11 C -0.54 -13.84 8.48 -34.44 -0.29 -14.14 16 12 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 13 C 0.07 1.75 5.38 -17.82 -0.10 1.65 16 14 N -0.89 -23.65 11.54 55.43 0.64 -23.01 16 15 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 18 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 19 O -0.32 -5.31 11.40 -45.71 -0.52 -5.83 16 20 C 0.21 2.89 8.89 101.05 0.90 3.79 16 21 O -0.31 -5.45 11.39 -45.68 -0.52 -5.97 16 22 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 23 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 24 H 0.08 1.62 6.11 -51.93 -0.32 1.30 16 25 H 0.12 1.84 8.06 -52.49 -0.42 1.41 16 26 H 0.14 2.48 6.23 -52.49 -0.33 2.15 16 27 H 0.31 6.65 7.27 -39.29 -0.29 6.36 16 28 H 0.36 8.70 7.08 -39.29 -0.28 8.42 16 29 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 262.28 15.07 3.95 3.95 Total: -1.00 -27.73 262.28 -6.49 -34.22 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -3.19 Total: 13.04 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: -1.77 Total: -12.38 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: 0.58 Total: -42.38 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: -1.04 Total: -11.80 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -27.73 -6.49 -34.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260835049.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.045 kcal (2) G-P(sol) polarization free energy of solvation -27.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds