Wall clock time and date at job start Mon Mar 30 2020 20:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99629 * 2 1 4 4 H 1.48501 * 109.46992 * 88.67437 * 3 2 1 5 5 H 1.48499 * 109.47121 * 208.67501 * 3 2 1 6 6 H 1.48504 * 109.47103 * 328.67496 * 3 2 1 7 7 C 1.37876 * 120.00257 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00052 * 358.14704 * 7 2 1 9 9 C 1.50697 * 119.99930 * 178.15088 * 7 2 1 10 10 H 1.08999 * 109.47371 * 25.30005 * 9 7 2 11 11 N 1.46899 * 109.47332 * 265.30100 * 9 7 2 12 12 C 1.50704 * 109.47137 * 145.30089 * 9 7 2 13 13 C 1.38287 * 119.95670 * 79.72824 * 12 9 7 14 14 C 1.38088 * 120.03475 * 179.78078 * 13 12 9 15 15 C 1.38846 * 119.98854 * 0.56670 * 14 13 12 16 16 C 1.38590 * 119.86341 * 359.62012 * 15 14 13 17 17 C 1.38210 * 119.95531 * 259.99923 * 12 9 7 18 18 C 1.50779 * 120.42669 * 180.23020 * 16 15 14 19 19 O 1.43075 * 109.30142 * 343.93667 * 18 16 15 20 20 C 1.43260 * 113.03000 * 48.58313 * 19 18 16 21 21 O 1.35972 * 119.59011 * 179.51372 * 15 14 13 22 22 H 0.96990 * 120.00503 * 359.97438 * 1 2 3 23 23 H 1.00904 * 110.99890 * 306.38710 * 11 9 7 24 24 H 1.00903 * 110.99918 * 70.33717 * 11 9 7 25 25 H 1.08004 * 119.98282 * 0.04862 * 13 12 9 26 26 H 1.08001 * 120.00552 * 180.30670 * 14 13 12 27 27 H 1.07993 * 119.94835 * 359.93471 * 17 12 9 28 28 H 1.09008 * 109.49986 * 103.88077 * 18 16 15 29 29 H 1.08995 * 109.50203 * 223.95186 * 18 16 15 30 30 H 1.09001 * 109.61747 * 54.26947 * 20 19 18 31 31 H 1.09004 * 109.61499 * 174.80272 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4685 2.0627 1.3997 5 1 3.5604 1.4324 -0.6718 6 1 1.4607 2.6445 -0.7279 7 6 2.0046 -1.1940 -0.0005 8 1 1.4651 -2.1291 0.0293 9 6 3.5110 -1.1942 -0.0426 10 1 3.8862 -0.2585 0.3716 11 7 3.9620 -1.3294 -1.4341 12 6 4.0361 -2.3496 0.7701 13 6 4.0496 -3.6232 0.2313 14 6 4.5345 -4.6823 0.9729 15 6 4.9980 -4.4705 2.2645 16 6 4.9798 -3.1939 2.8035 17 6 4.4983 -2.1360 2.0549 18 6 5.4848 -2.9487 4.2029 19 8 5.5751 -4.1957 4.8984 20 6 6.2506 -5.2099 4.1451 21 8 5.4645 -5.5209 2.9910 22 1 -0.4850 0.8399 0.0004 23 1 3.5431 -2.1355 -1.8733 24 1 3.7690 -0.4901 -1.9599 25 1 3.6846 -3.7888 -0.7716 26 1 4.5494 -5.6759 0.5498 27 1 4.4836 -1.1410 2.4747 28 1 6.4703 -2.4849 4.1581 29 1 4.7952 -2.2878 4.7280 30 1 7.2289 -4.8440 3.8336 31 1 6.3694 -6.1032 4.7584 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261061014.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:55:05 Heat of formation + Delta-G solvation = -61.810915 kcal Electronic energy + Delta-G solvation = -16364.573591 eV Core-core repulsion = 13610.887784 eV Total energy + Delta-G solvation = -2753.685807 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.59956 -37.93289 -36.27485 -34.53037 -32.01168 -31.22573 -29.59977 -26.61181 -26.00871 -25.37535 -22.48309 -21.69891 -19.38033 -18.32082 -17.27887 -16.72481 -16.25503 -15.53113 -15.12046 -14.43123 -14.26385 -14.14220 -13.83602 -13.25543 -12.94171 -12.75617 -12.63138 -12.02274 -11.65418 -11.58123 -11.09088 -10.99051 -10.69079 -10.41307 -10.01307 -9.92495 -9.53650 -8.80045 -8.34929 -7.83754 -7.33398 -6.25957 -4.29664 1.75946 1.96194 3.14840 3.24982 3.25402 3.38011 3.66430 4.23018 4.27030 4.73694 4.87158 5.08828 5.12039 5.19527 5.35686 5.57156 5.65358 5.78244 5.99644 6.11791 6.17252 6.34803 6.54833 6.67491 6.77944 6.99829 7.21670 7.35691 7.47400 7.71198 8.18549 8.28367 8.53996 8.80772 9.34612 10.86563 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.036517 B = 0.007017 C = 0.006521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.579693 B = 3989.442952 C = 4292.674075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.076 3.924 3 Si 0.873 3.127 4 H -0.275 1.275 5 H -0.259 1.259 6 H -0.286 1.286 7 C -0.544 4.544 8 H 0.075 0.925 9 C 0.209 3.791 10 H 0.050 0.950 11 N -0.853 5.853 12 C -0.041 4.041 13 C -0.072 4.072 14 C -0.144 4.144 15 C 0.102 3.898 16 C -0.203 4.203 17 C -0.083 4.083 18 C 0.106 3.894 19 O -0.391 6.391 20 C 0.225 3.775 21 O -0.337 6.337 22 H 0.266 0.734 23 H 0.328 0.672 24 H 0.328 0.672 25 H 0.127 0.873 26 H 0.124 0.876 27 H 0.121 0.879 28 H 0.066 0.934 29 H 0.111 0.889 30 H 0.056 0.944 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.934 -5.765 5.107 14.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.128 4.128 3 Si 0.700 3.300 4 H -0.200 1.200 5 H -0.183 1.183 6 H -0.212 1.212 7 C -0.584 4.584 8 H 0.093 0.907 9 C 0.100 3.900 10 H 0.068 0.932 11 N -0.380 5.380 12 C -0.042 4.042 13 C -0.090 4.090 14 C -0.163 4.163 15 C 0.058 3.942 16 C -0.204 4.204 17 C -0.102 4.102 18 C 0.030 3.970 19 O -0.311 6.311 20 C 0.112 3.888 21 O -0.254 6.254 22 H 0.076 0.924 23 H 0.139 0.861 24 H 0.139 0.861 25 H 0.144 0.856 26 H 0.142 0.858 27 H 0.139 0.861 28 H 0.084 0.916 29 H 0.129 0.871 30 H 0.074 0.926 31 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 12.409 -5.951 5.586 14.853 hybrid contribution -0.683 1.253 -0.248 1.448 sum 11.726 -4.698 5.338 13.714 Atomic orbital electron populations 1.69904 1.06362 1.27264 1.49063 1.25111 0.94774 0.99091 0.93829 0.86900 0.80501 0.83665 0.78948 1.20040 1.18347 1.21192 1.21636 0.89481 0.94940 1.52314 0.90683 1.18401 0.93567 0.91724 0.86302 0.93189 1.59589 1.65792 1.07870 1.04771 1.20069 0.94289 0.95814 0.93987 1.20760 0.97299 0.91493 0.99457 1.20446 1.04311 0.99881 0.91647 1.18329 0.99067 0.85554 0.91247 1.20092 1.08639 0.94044 0.97663 1.20540 0.97916 0.97615 0.94124 1.21495 1.00912 0.85367 0.89193 1.88224 1.78517 1.21813 1.42543 1.24286 0.89834 0.92320 0.82408 1.86179 1.67570 1.32430 1.39207 0.92374 0.86076 0.86090 0.85552 0.85847 0.86113 0.91592 0.87112 0.92641 0.84771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.19 13.96 55.43 0.77 -25.41 16 2 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.87 20.24 26.90 -169.99 -4.57 15.67 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.26 -5.68 6.37 56.52 0.36 -5.32 16 6 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 7 C -0.54 -14.53 9.07 -34.44 -0.31 -14.85 16 8 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 9 C 0.21 4.74 2.54 -70.02 -0.18 4.56 16 10 H 0.05 1.15 5.17 -51.93 -0.27 0.89 16 11 N -0.85 -17.37 8.97 -6.65 -0.06 -17.43 16 12 C -0.04 -0.85 4.94 -104.61 -0.52 -1.36 16 13 C -0.07 -1.37 9.30 -39.62 -0.37 -1.74 16 14 C -0.14 -2.56 9.98 -39.41 -0.39 -2.95 16 15 C 0.10 1.82 6.56 -39.23 -0.26 1.56 16 16 C -0.20 -3.56 5.82 -104.45 -0.61 -4.17 16 17 C -0.08 -1.59 9.34 -39.58 -0.37 -1.96 16 18 C 0.11 1.51 6.87 36.04 0.25 1.75 16 19 O -0.39 -5.69 10.97 -59.11 -0.65 -6.34 16 20 C 0.22 2.78 7.94 101.05 0.80 3.58 16 21 O -0.34 -5.43 10.48 -43.53 -0.46 -5.89 16 22 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 23 H 0.33 6.35 7.56 -39.29 -0.30 6.05 16 24 H 0.33 6.60 8.59 -39.29 -0.34 6.26 16 25 H 0.13 2.28 6.81 -52.48 -0.36 1.92 16 26 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 27 H 0.12 2.14 8.03 -52.49 -0.42 1.72 16 28 H 0.07 0.79 8.14 -51.92 -0.42 0.36 16 29 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 30 H 0.06 0.59 8.12 -51.93 -0.42 0.16 16 31 H 0.13 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 262.82 15.07 3.96 3.96 Total: -1.00 -30.60 262.82 -6.45 -37.05 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: -3.39 Total: 11.98 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -2.05 Total: -13.59 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: 0.71 Total: -42.85 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: -1.10 Total: -12.22 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.57 Total: 15.67 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.60 -6.45 -37.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261061014.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.760 kcal (2) G-P(sol) polarization free energy of solvation -30.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds