Wall clock time and date at job start Mon Mar 30 2020 20:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.31834 * 120.26780 * 2 1 4 4 C 1.32703 * 122.58768 * 180.02562 * 3 2 1 5 5 N 1.36907 * 130.96497 * 179.97438 * 4 3 2 6 6 H 0.96999 * 125.87086 * 359.97438 * 5 4 3 7 7 C 1.36945 * 108.25772 * 180.02562 * 5 4 3 8 8 N 1.38292 * 125.55777 * 179.97438 * 7 5 4 9 9 N 1.30440 * 108.88223 * 359.97438 * 7 5 4 10 10 N 1.35041 * 122.05758 * 0.02562 * 4 3 2 11 11 C 1.34990 * 120.52207 * 359.69329 * 10 4 3 12 12 O 1.21850 * 121.03900 * 180.29057 * 11 10 4 13 13 C 1.40935 * 120.26717 * 180.02562 * 2 1 3 14 14 C 1.40718 * 121.27939 * 359.97438 * 13 2 1 15 15 H 1.07996 * 120.00004 * 327.99315 * 14 13 2 16 16 C 1.39794 * 119.99671 * 147.99095 * 14 13 2 17 17 N 1.31031 * 120.00316 * 331.00409 * 16 14 13 18 18 Si 1.86803 * 119.99867 * 151.00489 * 16 14 13 19 19 H 1.48497 * 109.46979 * 180.02562 * 18 16 14 20 20 H 1.48499 * 109.46907 * 300.00056 * 18 16 14 21 21 H 1.48496 * 109.47163 * 60.00005 * 18 16 14 22 22 H 1.09000 * 109.47197 * 269.97952 * 1 2 3 23 23 H 1.09005 * 109.47536 * 29.97532 * 1 2 3 24 24 H 1.09001 * 109.47659 * 149.97882 * 1 2 3 25 25 H 0.97000 * 119.99901 * 359.97438 * 8 7 5 26 26 H 0.97002 * 119.99810 * 179.97438 * 8 7 5 27 27 H 0.97002 * 119.99684 * 355.01785 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1714 1.1386 0.0000 4 6 3.4974 1.1923 -0.0005 5 7 4.3523 2.2616 -0.0011 6 1 4.0934 3.1964 -0.0015 7 6 5.6360 1.7845 -0.0020 8 7 6.7818 2.5590 -0.0033 9 7 5.6017 0.4806 -0.0015 10 7 4.2599 0.0778 -0.0016 11 6 3.6872 -1.1446 0.0041 12 8 4.3662 -2.1564 0.0085 13 6 2.2173 -1.2172 -0.0005 14 6 1.5468 -2.4544 -0.0006 15 1 0.5925 -2.5514 0.4955 16 6 2.1162 -3.5579 -0.6428 17 7 2.9059 -3.3808 -1.6732 18 14 1.7512 -5.2850 -0.0318 19 1 2.4714 -6.2714 -0.8765 20 1 2.2024 -5.4175 1.3768 21 1 0.2902 -5.5392 -0.1096 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3634 0.8902 -0.5135 24 1 -0.3634 -0.8898 -0.5141 25 1 6.7132 3.5265 -0.0039 26 1 7.6540 2.1345 -0.0035 27 1 3.0383 -2.4907 -2.0354 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261079270.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:55:11 Heat of formation + Delta-G solvation = 80.902731 kcal Electronic energy + Delta-G solvation = -16491.169281 eV Core-core repulsion = 13672.424410 eV Total energy + Delta-G solvation = -2818.744871 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 235.081 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.63212 -38.25390 -35.99007 -34.74791 -33.44204 -32.62537 -30.50569 -29.12160 -27.14639 -24.80863 -22.38778 -21.42728 -20.99185 -18.62927 -17.98793 -17.04887 -16.27995 -15.87889 -15.75245 -15.39205 -14.11226 -13.77461 -13.51906 -13.17597 -12.47516 -12.40417 -11.69623 -11.41204 -11.21155 -11.06500 -10.88306 -10.35869 -10.10217 -10.05631 -9.66745 -9.25365 -8.70778 -8.39158 -8.02677 -7.38809 -6.82412 -4.19571 2.21378 2.57834 2.66044 2.88548 3.19048 3.29459 3.42542 3.49873 4.05129 4.49660 4.57773 5.26180 5.34766 5.62106 5.97987 6.29996 6.56800 6.65186 6.68277 6.80944 7.12082 7.19842 7.49796 7.67310 7.73871 7.85377 7.91110 8.33667 8.42156 8.63617 9.39476 9.44779 9.95350 Molecular weight = 235.08amu Principal moments of inertia in cm(-1) A = 0.034288 B = 0.009233 C = 0.007553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.414000 B = 3031.846797 C = 3706.413243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 C -0.063 4.063 3 N -0.479 5.479 4 C 0.357 3.643 5 N -0.636 5.636 6 H 0.426 0.574 7 C 0.539 3.461 8 N -0.828 5.828 9 N -0.355 5.355 10 N -0.363 5.363 11 C 0.520 3.480 12 O -0.524 6.524 13 C -0.035 4.035 14 C -0.440 4.440 15 H 0.096 0.904 16 C 0.032 3.968 17 N -0.731 5.731 18 Si 1.073 2.927 19 H -0.272 1.272 20 H -0.273 1.273 21 H -0.275 1.275 22 H 0.041 0.959 23 H 0.045 0.955 24 H 0.064 0.936 25 H 0.410 0.590 26 H 0.424 0.576 27 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.921 9.308 1.711 9.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.189 4.189 3 N -0.207 5.207 4 C 0.012 3.988 5 N -0.276 5.276 6 H 0.265 0.735 7 C 0.170 3.830 8 N -0.387 5.387 9 N -0.190 5.190 10 N -0.178 5.178 11 C 0.317 3.683 12 O -0.398 6.398 13 C -0.047 4.047 14 C -0.469 4.469 15 H 0.114 0.886 16 C -0.195 4.195 17 N -0.350 5.350 18 Si 0.896 3.104 19 H -0.197 1.197 20 H -0.198 1.198 21 H -0.200 1.200 22 H 0.060 0.940 23 H 0.064 0.936 24 H 0.083 0.917 25 H 0.241 0.759 26 H 0.256 0.744 27 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.667 6.642 1.392 7.291 hybrid contribution 0.173 2.665 0.363 2.696 sum 2.841 9.307 1.755 9.888 Atomic orbital electron populations 1.19920 0.89721 1.00798 0.99801 1.20052 0.94554 0.85085 1.19213 1.65994 1.00387 1.32103 1.22185 1.18475 0.86789 0.79831 1.13667 1.41224 1.02371 1.08266 1.75713 0.73483 1.19877 0.80785 0.88597 0.93767 1.40800 1.03503 1.07622 1.86738 1.77557 0.99386 1.05042 1.36982 1.47421 1.01874 1.07729 1.60755 1.19478 0.89113 0.79387 0.80335 1.90798 1.64479 1.32671 1.51894 1.20130 0.86902 0.95616 1.02054 1.20261 1.05650 0.93273 1.27688 0.88597 1.27169 0.92266 1.06695 0.93395 1.70419 1.21275 1.28909 1.14364 0.83513 0.76799 0.72761 0.77368 1.19678 1.19841 1.20005 0.94003 0.93572 0.91717 0.75934 0.74374 0.89548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.93 9.67 36.00 0.35 -0.58 15 2 C -0.06 -1.59 6.90 -81.57 -0.56 -2.15 15 3 N -0.48 -11.56 10.27 -9.42 -0.10 -11.66 15 4 C 0.36 8.32 8.98 -321.32 -2.89 5.43 15 5 N -0.64 -10.92 6.15 -14.17 -0.09 -11.01 15 6 H 0.43 5.39 8.96 -40.82 -0.37 5.02 15 7 C 0.54 9.10 9.46 -319.57 -3.02 6.08 15 8 N -0.83 -8.24 9.06 30.21 0.27 -7.96 15 9 N -0.35 -8.15 12.63 30.22 0.38 -7.77 15 10 N -0.36 -9.51 3.77 -13.88 -0.05 -9.56 15 11 C 0.52 15.20 7.02 -12.54 -0.09 15.11 15 12 O -0.52 -16.72 15.06 5.05 0.08 -16.65 15 13 C -0.04 -0.97 5.23 -104.31 -0.55 -1.52 15 14 C -0.44 -11.70 7.86 -38.06 -0.30 -12.00 15 15 H 0.10 2.34 7.35 -52.49 -0.39 1.96 15 16 C 0.03 0.86 4.35 -17.31 -0.08 0.78 15 17 N -0.73 -20.88 12.02 55.54 0.67 -20.21 15 18 Si 1.07 22.65 30.02 -169.99 -5.10 17.55 15 19 H -0.27 -5.75 7.11 56.52 0.40 -5.35 15 20 H -0.27 -5.73 7.11 56.52 0.40 -5.33 15 21 H -0.27 -5.19 7.11 56.52 0.40 -4.79 15 22 H 0.04 0.81 8.14 -51.93 -0.42 0.38 15 23 H 0.05 0.88 8.14 -51.93 -0.42 0.45 15 24 H 0.06 1.33 6.99 -51.93 -0.36 0.96 15 25 H 0.41 2.45 8.95 -40.82 -0.37 2.08 15 26 H 0.42 3.65 8.95 -40.82 -0.37 3.28 15 27 H 0.29 8.71 7.20 -40.82 -0.29 8.42 15 LS Contribution 244.47 15.07 3.68 3.68 Total: -1.00 -36.18 244.47 -9.17 -45.35 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -1.78 Total: 7.09 kcal Atomic # 6 Polarization: 18.28 SS G_CDS: -7.13 Total: 11.15 kcal Atomic # 7 Polarization: -69.26 SS G_CDS: 1.09 Total: -68.17 kcal Atomic # 8 Polarization: -16.72 SS G_CDS: 0.08 Total: -16.65 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.10 Total: 17.55 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -36.18 -9.17 -45.35 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261079270.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.250 kcal (2) G-P(sol) polarization free energy of solvation -36.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds