Wall clock time and date at job start Mon Mar 30 2020 20:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99746 * 2 1 4 4 H 1.48503 * 109.46911 * 239.99439 * 3 2 1 5 5 H 1.48493 * 109.47242 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47084 * 120.00172 * 3 2 1 7 7 C 1.37872 * 120.00027 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00043 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00208 * 0.02562 * 7 2 1 10 10 H 1.08997 * 110.85432 * 62.32937 * 9 7 2 11 11 C 1.54628 * 110.96448 * 298.54216 * 9 7 2 12 12 C 1.51287 * 104.19684 * 217.08132 * 11 9 7 13 13 O 1.21277 * 124.94491 * 196.28999 * 12 11 9 14 14 N 1.34417 * 110.11176 * 16.25468 * 12 11 9 15 15 C 1.46500 * 124.34911 * 180.42948 * 14 12 11 16 16 C 1.50697 * 109.47246 * 89.97746 * 15 14 12 17 17 C 1.34507 * 125.79034 * 90.00312 * 16 15 14 18 18 C 1.41383 * 106.84259 * 179.97438 * 17 16 15 19 19 C 1.34512 * 106.83827 * 359.97438 * 18 17 16 20 20 O 1.34299 * 125.78499 * 269.69075 * 16 15 14 21 21 C 1.46767 * 111.30143 * 0.40865 * 14 12 11 22 22 H 0.96995 * 120.00057 * 0.02562 * 1 2 3 23 23 H 1.08999 * 110.49273 * 335.76058 * 11 9 7 24 24 H 1.09005 * 110.48285 * 98.27727 * 11 9 7 25 25 H 1.09008 * 109.47282 * 209.97635 * 15 14 12 26 26 H 1.08998 * 109.47248 * 329.97068 * 15 14 12 27 27 H 1.08001 * 126.58546 * 0.03335 * 17 16 15 28 28 H 1.07997 * 126.58519 * 179.97438 * 18 17 16 29 29 H 1.08007 * 125.79055 * 179.97438 * 19 18 17 30 30 H 1.09003 * 110.24206 * 223.98100 * 21 14 12 31 31 H 1.08999 * 110.24692 * 101.98467 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6478 -2.5989 -0.9018 11 6 0.3765 -2.6331 1.2687 12 6 0.4664 -4.0999 1.6282 13 8 -0.2862 -4.6773 2.3839 14 7 1.5013 -4.6702 0.9875 15 6 1.8678 -6.0839 1.1037 16 6 1.1436 -6.8790 0.0481 17 6 1.5963 -7.1354 -1.1923 18 6 0.6045 -7.9082 -1.8387 19 6 -0.3948 -8.0783 -0.9545 20 8 -0.0606 -7.4567 0.1883 21 6 2.2166 -3.6949 0.1562 22 1 -0.4850 0.8400 -0.0004 23 1 0.7762 -2.0177 2.0746 24 1 -0.6547 -2.3539 1.0521 25 1 2.9437 -6.1928 0.9664 26 1 1.5886 -6.4516 2.0910 27 1 2.5373 -6.8137 -1.6134 28 1 0.6418 -8.2890 -2.8487 29 1 -1.3094 -8.6247 -1.1322 30 1 2.4441 -4.1255 -0.8191 31 1 3.1337 -3.3772 0.6522 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261104746.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:55:25 Heat of formation + Delta-G solvation = -21.306400 kcal Electronic energy + Delta-G solvation = -16355.172360 eV Core-core repulsion = 13603.242961 eV Total energy + Delta-G solvation = -2751.929400 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.36893 -39.44020 -35.73176 -33.84580 -32.76986 -31.71813 -29.24158 -26.93286 -25.84700 -24.27707 -21.60454 -20.54095 -20.28825 -18.76540 -17.33165 -16.55096 -16.31360 -15.42309 -15.18789 -14.63921 -14.44274 -14.02961 -13.03488 -12.80031 -12.64587 -12.63472 -12.49629 -12.24472 -11.90633 -11.47052 -11.04087 -10.88815 -10.65942 -10.27924 -9.77385 -9.55163 -9.42415 -8.88663 -8.50345 -8.38431 -8.13005 -6.15452 -4.21801 1.83095 2.71127 3.10104 3.26087 3.32147 3.33141 3.48231 3.79206 4.33668 4.84609 5.04179 5.15470 5.17827 5.30218 5.58831 5.69564 5.87044 5.92558 6.04465 6.18557 6.22432 6.43005 6.52302 6.63386 6.81116 7.20864 7.30808 7.37583 7.57639 7.76694 7.81691 8.18119 8.78889 8.94353 9.44473 10.94167 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.039611 B = 0.006280 C = 0.005998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.701277 B = 4457.749789 C = 4667.309604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.066 3.934 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.062 0.938 9 C 0.047 3.953 10 H 0.043 0.957 11 C -0.125 4.125 12 C 0.513 3.487 13 O -0.555 6.555 14 N -0.622 5.622 15 C 0.202 3.798 16 C -0.022 4.022 17 C -0.202 4.202 18 C -0.217 4.217 19 C -0.044 4.044 20 O -0.167 6.167 21 C 0.106 3.894 22 H 0.265 0.735 23 H 0.093 0.907 24 H 0.093 0.907 25 H 0.106 0.894 26 H 0.092 0.908 27 H 0.147 0.853 28 H 0.146 0.854 29 H 0.199 0.801 30 H 0.058 0.942 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.835 -11.624 -2.223 12.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.137 4.137 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.081 0.919 9 C 0.028 3.972 10 H 0.061 0.939 11 C -0.166 4.166 12 C 0.304 3.696 13 O -0.434 6.434 14 N -0.356 5.356 15 C 0.079 3.921 16 C -0.074 4.074 17 C -0.223 4.223 18 C -0.236 4.236 19 C -0.113 4.113 20 O -0.062 6.062 21 C -0.016 4.016 22 H 0.074 0.926 23 H 0.111 0.889 24 H 0.111 0.889 25 H 0.125 0.875 26 H 0.110 0.890 27 H 0.165 0.835 28 H 0.163 0.837 29 H 0.216 0.784 30 H 0.077 0.923 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.129 -11.833 -1.540 12.336 hybrid contribution 0.449 0.803 -0.467 1.032 sum 3.578 -11.030 -2.007 11.768 Atomic orbital electron populations 1.69947 1.05994 1.27192 1.49038 1.24990 0.94881 0.99316 0.94546 0.86584 0.79542 0.82755 0.78708 1.20151 1.21246 1.20120 1.20922 0.92893 0.89577 1.52608 0.91933 1.19625 0.92180 0.91617 0.93778 0.93886 1.22384 1.03974 0.88635 1.01560 1.22024 0.78317 0.91384 0.77903 1.90601 1.44521 1.70761 1.37510 1.48574 1.31947 1.07153 1.47937 1.19597 0.97141 0.79598 0.95780 1.23144 0.85602 1.00167 0.98475 1.21594 1.02187 1.04347 0.94125 1.21789 0.95463 1.05127 1.01265 1.24032 1.01186 1.01517 0.84522 1.84104 1.32350 1.53518 1.36208 1.22482 0.96673 0.89441 0.92996 0.92572 0.88875 0.88864 0.87547 0.88986 0.83534 0.83665 0.78442 0.92337 0.91535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.21 12.40 55.43 0.69 -23.53 16 2 C 0.07 1.72 5.34 -17.82 -0.10 1.62 16 3 Si 0.90 20.10 29.54 -169.99 -5.02 15.08 16 4 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.52 -13.13 8.43 -34.44 -0.29 -13.42 16 8 H 0.06 1.51 7.66 -52.49 -0.40 1.11 16 9 C 0.05 1.09 3.08 -90.14 -0.28 0.82 16 10 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 11 C -0.13 -2.95 5.46 -26.74 -0.15 -3.10 16 12 C 0.51 11.54 8.02 -10.86 -0.09 11.45 16 13 O -0.56 -13.85 17.59 5.56 0.10 -13.75 16 14 N -0.62 -11.81 2.92 -173.78 -0.51 -12.31 16 15 C 0.20 3.12 6.46 -5.20 -0.03 3.09 16 16 C -0.02 -0.35 6.90 -35.63 -0.25 -0.60 16 17 C -0.20 -2.90 10.81 -39.70 -0.43 -3.33 16 18 C -0.22 -2.85 10.91 -39.70 -0.43 -3.28 16 19 C -0.04 -0.60 12.09 29.42 0.36 -0.24 16 20 O -0.17 -2.86 10.65 5.70 0.06 -2.80 16 21 C 0.11 2.00 6.90 -3.12 -0.02 1.98 16 22 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 23 H 0.09 2.26 7.89 -51.93 -0.41 1.85 16 24 H 0.09 2.36 7.97 -51.93 -0.41 1.95 16 25 H 0.11 1.25 8.14 -51.92 -0.42 0.83 16 26 H 0.09 1.44 7.92 -51.93 -0.41 1.03 16 27 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16 28 H 0.15 1.51 8.06 -52.49 -0.42 1.08 16 29 H 0.20 1.85 8.06 -52.48 -0.42 1.43 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.07 1.20 7.78 -51.93 -0.40 0.79 16 LS Contribution 274.94 15.07 4.14 4.14 Total: -1.00 -30.40 274.94 -5.95 -36.36 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -3.71 Total: 1.82 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -1.70 Total: -5.01 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: 0.18 Total: -35.84 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: 0.16 Total: -16.55 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.40 -5.95 -36.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261104746.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.050 kcal (2) G-P(sol) polarization free energy of solvation -30.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds