Wall clock time and date at job start Mon Mar 30 2020 20:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.47364 * 179.72223 * 3 2 1 5 5 H 1.48508 * 109.46883 * 299.72346 * 3 2 1 6 6 H 1.48497 * 109.46870 * 59.72156 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 H 1.09001 * 110.85925 * 303.78659 * 9 7 2 11 11 C 1.54629 * 110.97239 * 67.62292 * 9 7 2 12 12 C 1.51279 * 104.19493 * 142.91506 * 11 9 7 13 13 O 1.21281 * 124.94279 * 163.71810 * 12 11 9 14 14 N 1.34424 * 110.11607 * 343.74629 * 12 11 9 15 15 C 1.46502 * 124.34815 * 179.57463 * 14 12 11 16 16 C 1.50703 * 109.47097 * 270.02749 * 15 14 12 17 17 C 1.34510 * 125.79444 * 89.70987 * 16 15 14 18 18 C 1.41380 * 106.84556 * 179.89214 * 17 16 15 19 19 C 1.34520 * 106.83658 * 0.37495 * 18 17 16 20 20 O 1.34305 * 125.78376 * 270.02519 * 16 15 14 21 21 C 1.46755 * 111.30200 * 359.59735 * 14 12 11 22 22 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 23 23 H 1.08999 * 110.48629 * 261.59505 * 11 9 7 24 24 H 1.09001 * 110.48231 * 24.23663 * 11 9 7 25 25 H 1.08998 * 109.46989 * 30.01941 * 15 14 12 26 26 H 1.08991 * 109.47522 * 150.02508 * 15 14 12 27 27 H 1.07997 * 126.57761 * 0.03586 * 17 16 15 28 28 H 1.07994 * 126.58510 * 180.12642 * 18 17 16 29 29 H 1.08003 * 125.78895 * 179.74913 * 19 18 17 30 30 H 1.09003 * 110.24310 * 258.01265 * 21 14 12 31 31 H 1.09003 * 110.24825 * 136.01901 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7093 1.3462 0.0068 5 1 1.8957 2.3934 -1.2159 6 1 1.8855 2.3993 1.2091 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 1 0.5627 -2.5499 0.8496 11 6 0.5037 -2.7067 -1.3320 12 6 0.6241 -4.1912 -1.5977 13 8 -0.0528 -4.8123 -2.3895 14 7 1.5900 -4.7217 -0.8280 15 6 1.9621 -6.1387 -0.8281 16 6 1.1361 -6.8751 0.1949 17 6 -0.0575 -7.4543 -0.0268 18 6 -0.4684 -8.0279 1.1983 19 6 0.4949 -7.7577 2.0976 20 8 1.4643 -7.0592 1.4842 21 6 2.2235 -3.6993 0.0129 22 1 -0.4851 -0.8400 -0.0004 23 1 -0.5434 -2.4207 -1.2325 24 1 0.9819 -2.1366 -2.1284 25 1 1.7793 -6.5622 -1.8157 26 1 3.0190 -6.2369 -0.5806 27 1 -0.5972 -7.4786 -0.9619 28 1 -1.3823 -8.5743 1.3788 29 1 0.4895 -8.0522 3.1367 30 1 3.1856 -3.4075 -0.4085 31 1 2.3536 -4.0735 1.0283 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261104748.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:55:26 Heat of formation + Delta-G solvation = -25.292786 kcal Electronic energy + Delta-G solvation = -16390.744443 eV Core-core repulsion = 13638.642181 eV Total energy + Delta-G solvation = -2752.102262 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.44042 -39.64066 -35.92128 -34.13321 -32.87075 -31.71027 -29.16990 -27.06984 -25.74415 -24.13541 -21.66047 -20.67967 -20.52840 -18.95532 -17.44033 -16.93841 -16.45514 -15.61102 -15.25003 -14.86270 -14.08624 -13.79789 -13.38864 -13.15872 -12.87894 -12.71969 -12.60914 -12.00689 -11.80241 -11.64196 -11.46856 -10.84635 -10.38992 -10.17389 -9.90934 -9.82876 -9.41543 -8.65183 -8.49987 -8.46007 -8.24319 -6.48190 -4.23418 1.74834 2.66777 2.97874 3.31486 3.39319 3.42023 3.55045 3.66129 4.43356 4.76482 4.94900 5.12801 5.22873 5.26478 5.47550 5.53636 5.77164 5.86953 5.98812 6.05338 6.16021 6.24737 6.33103 6.53632 6.58519 6.93498 7.03530 7.21868 7.30949 7.60196 7.99826 8.28078 8.71461 8.75127 9.49784 10.90340 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.038239 B = 0.006344 C = 0.006033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.056270 B = 4412.274491 C = 4640.255883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.023 3.977 3 Si 1.075 2.925 4 H -0.288 1.288 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.598 4.598 8 H 0.057 0.943 9 C 0.030 3.970 10 H 0.037 0.963 11 C -0.146 4.146 12 C 0.519 3.481 13 O -0.554 6.554 14 N -0.620 5.620 15 C 0.205 3.795 16 C -0.030 4.030 17 C -0.192 4.192 18 C -0.217 4.217 19 C -0.043 4.043 20 O -0.174 6.174 21 C 0.113 3.887 22 H 0.272 0.728 23 H 0.084 0.916 24 H 0.099 0.901 25 H 0.108 0.892 26 H 0.092 0.908 27 H 0.148 0.852 28 H 0.146 0.854 29 H 0.201 0.799 30 H 0.069 0.931 31 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.589 -12.161 2.328 12.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.182 4.182 3 Si 0.903 3.097 4 H -0.214 1.214 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.636 4.636 8 H 0.076 0.924 9 C 0.011 3.989 10 H 0.056 0.944 11 C -0.187 4.187 12 C 0.310 3.690 13 O -0.433 6.433 14 N -0.354 5.354 15 C 0.082 3.918 16 C -0.082 4.082 17 C -0.212 4.212 18 C -0.236 4.236 19 C -0.111 4.111 20 O -0.069 6.069 21 C -0.009 4.009 22 H 0.084 0.916 23 H 0.103 0.897 24 H 0.117 0.883 25 H 0.126 0.874 26 H 0.110 0.890 27 H 0.166 0.834 28 H 0.164 0.836 29 H 0.217 0.783 30 H 0.087 0.913 31 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.343 -10.782 2.040 11.471 hybrid contribution -0.153 -1.882 0.158 1.894 sum 3.190 -12.664 2.197 13.243 Atomic orbital electron populations 1.70747 1.06911 1.31084 1.45248 1.25861 0.96465 1.02739 0.93180 0.83445 0.74447 0.74682 0.77094 1.21403 1.21254 1.21276 1.21862 0.94240 0.90472 1.57010 0.92435 1.19806 0.93471 0.93260 0.92337 0.94449 1.22711 1.03203 0.89945 1.02813 1.21690 0.77613 0.91421 0.78321 1.90600 1.46858 1.68685 1.37178 1.48553 1.37672 1.06470 1.42676 1.19604 0.97093 0.80119 0.94951 1.23103 0.98325 1.03308 0.83451 1.21697 0.96412 1.03008 1.00051 1.21837 1.01665 1.06518 0.93562 1.24010 0.88851 0.99338 0.98940 1.84023 1.43041 1.58166 1.21694 1.22368 0.97617 0.87786 0.93140 0.91630 0.89721 0.88286 0.87368 0.88982 0.83416 0.83623 0.78272 0.91302 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.84 13.51 55.43 0.75 -25.09 16 2 C 0.02 0.62 5.37 -17.82 -0.10 0.52 16 3 Si 1.08 23.81 29.90 -169.99 -5.08 18.72 16 4 H -0.29 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.29 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.60 -15.38 8.39 -34.44 -0.29 -15.67 16 8 H 0.06 1.45 7.60 -52.49 -0.40 1.06 16 9 C 0.03 0.71 2.60 -90.14 -0.23 0.47 16 10 H 0.04 0.94 7.89 -51.93 -0.41 0.53 16 11 C -0.15 -3.34 5.63 -26.74 -0.15 -3.49 16 12 C 0.52 11.21 8.02 -10.86 -0.09 11.12 16 13 O -0.55 -12.96 17.59 5.56 0.10 -12.86 16 14 N -0.62 -11.63 2.92 -173.79 -0.51 -12.14 16 15 C 0.21 3.13 6.46 -5.19 -0.03 3.10 16 16 C -0.03 -0.49 6.90 -35.63 -0.25 -0.73 16 17 C -0.19 -3.00 10.81 -39.71 -0.43 -3.43 16 18 C -0.22 -2.91 10.91 -39.70 -0.43 -3.35 16 19 C -0.04 -0.55 12.09 29.42 0.36 -0.19 16 20 O -0.17 -2.67 10.65 5.69 0.06 -2.61 16 21 C 0.11 2.19 6.90 -3.12 -0.02 2.17 16 22 H 0.27 7.72 5.85 -40.82 -0.24 7.48 16 23 H 0.08 2.01 7.19 -51.93 -0.37 1.64 16 24 H 0.10 2.33 7.89 -51.93 -0.41 1.92 16 25 H 0.11 1.56 7.92 -51.93 -0.41 1.15 16 26 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.15 2.32 8.06 -52.49 -0.42 1.90 16 28 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 29 H 0.20 1.68 8.06 -52.48 -0.42 1.25 16 30 H 0.07 1.29 7.74 -51.93 -0.40 0.89 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 272.52 15.07 4.11 4.11 Total: -1.00 -30.56 272.52 -5.79 -36.35 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -3.55 Total: 3.00 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -1.66 Total: -9.47 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.24 Total: -37.23 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: 0.16 Total: -15.48 kcal Atomic # 14 Polarization: 23.81 SS G_CDS: -5.08 Total: 18.72 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.56 -5.79 -36.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261104748.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.057 kcal (2) G-P(sol) polarization free energy of solvation -30.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds