Wall clock time and date at job start Mon Mar 30 2020 20:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99945 * 2 1 4 4 H 1.48495 * 109.46840 * 85.32536 * 3 2 1 5 5 H 1.48497 * 109.47075 * 205.32752 * 3 2 1 6 6 H 1.48497 * 109.47129 * 325.32509 * 3 2 1 7 7 C 1.37876 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00065 * 5.11423 * 7 2 1 9 9 C 1.50703 * 119.99882 * 185.12611 * 7 2 1 10 10 H 1.08994 * 109.47293 * 4.69410 * 9 7 2 11 11 N 1.46901 * 109.46843 * 244.69641 * 9 7 2 12 12 C 1.48562 * 110.99993 * 169.89515 * 11 9 7 13 13 C 1.54376 * 104.59593 * 200.95722 * 12 11 9 14 14 H 1.08992 * 118.16134 * 244.14883 * 13 12 11 15 15 C 1.53000 * 118.12393 * 87.22973 * 13 12 11 16 16 C 1.52993 * 60.54858 * 268.33104 * 15 13 12 17 17 H 1.08994 * 120.23453 * 248.54212 * 16 15 13 18 18 C 1.48559 * 110.99975 * 54.47622 * 11 9 7 19 19 C 1.53000 * 109.47291 * 124.69848 * 9 7 2 20 20 F 1.39901 * 109.47266 * 65.67996 * 19 9 7 21 21 F 1.39895 * 109.47295 * 185.68429 * 19 9 7 22 22 F 1.39900 * 109.47023 * 305.68176 * 19 9 7 23 23 H 0.96994 * 120.00150 * 359.97438 * 1 2 3 24 24 H 1.09000 * 110.40921 * 319.73985 * 12 11 9 25 25 H 1.09001 * 110.40584 * 82.17866 * 12 11 9 26 26 H 1.08998 * 117.44343 * 160.68193 * 15 13 12 27 27 H 1.09003 * 117.44690 * 15.98100 * 15 13 12 28 28 H 1.08993 * 110.41729 * 277.82017 * 18 11 9 29 29 H 1.08999 * 110.41179 * 40.26603 * 18 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3978 2.1034 1.3954 5 1 3.5926 1.4137 -0.5989 6 1 1.4995 2.6221 -0.7965 7 6 2.0045 -1.1940 -0.0005 8 1 1.4677 -2.1275 -0.0843 9 6 3.5070 -1.1967 0.1161 10 1 3.8610 -0.1780 0.2742 11 7 4.0931 -1.7324 -1.1199 12 6 5.5645 -1.5286 -1.1433 13 6 5.9462 -1.6204 -2.6363 14 1 6.5946 -2.4375 -2.9522 15 6 5.8759 -0.3449 -3.4784 16 6 4.6555 -1.2645 -3.4026 17 1 4.3358 -1.8256 -4.2806 18 6 3.6025 -0.9878 -2.3080 19 6 3.9252 -2.0714 1.2997 20 9 3.5854 -3.4031 1.0384 21 9 5.3078 -1.9712 1.4881 22 9 3.2647 -1.6396 2.4549 23 1 -0.4850 0.8400 0.0004 24 1 5.8185 -0.5461 -0.7456 25 1 6.0657 -2.3114 -0.5739 26 1 6.4356 -0.3289 -4.4136 27 1 5.8226 0.6055 -2.9473 28 1 2.6266 -1.3632 -2.6158 29 1 3.5496 0.0794 -2.0927 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261116621.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:55:38 Heat of formation + Delta-G solvation = -113.544450 kcal Electronic energy + Delta-G solvation = -17874.977498 eV Core-core repulsion = 14577.191617 eV Total energy + Delta-G solvation = -3297.785882 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.01194 -46.60076 -46.39305 -39.35607 -34.78989 -32.38159 -29.00723 -27.96016 -24.81285 -23.55186 -20.77797 -20.22892 -19.64354 -18.00512 -17.42441 -16.64534 -16.34736 -15.93053 -14.65092 -13.86470 -13.67718 -13.38537 -13.32842 -13.28061 -12.94559 -12.80725 -12.65819 -12.60702 -12.21855 -11.84108 -11.64455 -11.20997 -10.84852 -10.62282 -10.24402 -10.14132 -9.79868 -9.70333 -9.57044 -8.90790 -7.67087 -6.40919 -4.47831 3.04067 3.09189 3.15888 3.81236 3.93068 4.09431 4.42403 4.80857 4.88383 5.05642 5.23580 5.25281 5.44509 5.50306 5.63206 5.73879 5.90929 5.98107 6.10669 6.19668 6.30261 6.43724 6.57380 6.76698 6.95827 7.55565 7.64075 8.18096 8.71856 9.16338 10.70049 Molecular weight = 235.09amu Principal moments of inertia in cm(-1) A = 0.020034 B = 0.015183 C = 0.010533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.287341 B = 1843.674812 C = 2657.559058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.091 3.909 3 Si 0.862 3.138 4 H -0.269 1.269 5 H -0.262 1.262 6 H -0.277 1.277 7 C -0.514 4.514 8 H 0.094 0.906 9 C 0.133 3.867 10 H 0.049 0.951 11 N -0.499 5.499 12 C 0.046 3.954 13 C -0.164 4.164 14 H 0.112 0.888 15 C -0.157 4.157 16 C -0.164 4.164 17 H 0.114 0.886 18 C 0.085 3.915 19 C 0.452 3.548 20 F -0.181 7.181 21 F -0.211 7.211 22 F -0.183 7.183 23 H 0.272 0.728 24 H 0.038 0.962 25 H 0.084 0.916 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.095 0.905 29 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.677 0.134 -3.598 10.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.116 4.116 3 Si 0.688 3.312 4 H -0.195 1.195 5 H -0.188 1.188 6 H -0.202 1.202 7 C -0.552 4.552 8 H 0.112 0.888 9 C 0.025 3.975 10 H 0.067 0.933 11 N -0.224 5.224 12 C -0.082 4.082 13 C -0.183 4.183 14 H 0.130 0.870 15 C -0.195 4.195 16 C -0.183 4.183 17 H 0.132 0.868 18 C -0.041 4.041 19 C 0.397 3.603 20 F -0.162 7.162 21 F -0.193 7.193 22 F -0.165 7.165 23 H 0.082 0.918 24 H 0.056 0.944 25 H 0.102 0.898 26 H 0.115 0.885 27 H 0.105 0.895 28 H 0.113 0.887 29 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 9.317 -0.344 -3.552 9.977 hybrid contribution 0.702 1.571 0.307 1.748 sum 10.019 1.227 -3.245 10.602 Atomic orbital electron populations 1.69847 1.06101 1.27664 1.46751 1.25016 0.94808 0.98598 0.93158 0.87139 0.80368 0.84307 0.79353 1.19450 1.18786 1.20213 1.20536 0.85919 0.96086 1.52666 0.88843 1.20948 0.99069 0.91836 0.85680 0.93336 1.65656 1.01510 1.52647 1.02600 1.22878 0.91347 1.00153 0.93828 1.23374 1.01911 0.99491 0.93555 0.87012 1.23059 1.00775 0.94550 1.01081 1.23554 0.90020 1.04166 1.00570 0.86796 1.22355 0.97651 0.96527 0.87616 1.21376 0.72446 0.80548 0.85926 1.93085 1.91977 1.37099 1.94078 1.93048 1.33847 1.96264 1.96170 1.93100 1.81070 1.89758 1.52537 0.91806 0.94381 0.89806 0.88487 0.89483 0.88656 0.93894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.69 13.96 55.43 0.77 -23.92 15 2 C 0.09 2.45 5.47 -17.82 -0.10 2.35 15 3 Si 0.86 19.90 25.99 -169.99 -4.42 15.49 15 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 15 5 H -0.26 -5.76 5.37 56.52 0.30 -5.46 15 6 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 7 C -0.51 -13.70 7.34 -34.44 -0.25 -13.95 15 8 H 0.09 2.77 8.06 -52.49 -0.42 2.35 15 9 C 0.13 3.12 1.38 -68.86 -0.10 3.02 15 10 H 0.05 1.15 4.30 -51.93 -0.22 0.93 15 11 N -0.50 -10.62 5.02 -223.40 -1.12 -11.74 15 12 C 0.05 0.83 5.02 -2.18 -0.01 0.82 15 13 C -0.16 -2.53 7.13 -89.24 -0.64 -3.16 15 14 H 0.11 1.51 8.14 -51.93 -0.42 1.09 15 15 C -0.16 -2.19 10.07 -26.73 -0.27 -2.45 15 16 C -0.16 -2.62 7.13 -89.23 -0.64 -3.26 15 17 H 0.11 1.63 8.14 -51.93 -0.42 1.20 15 18 C 0.09 1.70 5.35 -2.18 -0.01 1.69 15 19 C 0.45 10.27 2.77 37.16 0.10 10.38 15 20 F -0.18 -4.20 16.98 2.25 0.04 -4.16 15 21 F -0.21 -4.34 14.91 2.25 0.03 -4.31 15 22 F -0.18 -4.31 16.88 2.25 0.04 -4.27 15 23 H 0.27 7.18 8.31 -40.82 -0.34 6.84 15 24 H 0.04 0.70 7.82 -51.93 -0.41 0.30 15 25 H 0.08 1.49 7.00 -51.93 -0.36 1.13 15 26 H 0.10 1.10 8.14 -51.93 -0.42 0.67 15 27 H 0.09 1.26 8.14 -51.93 -0.42 0.84 15 28 H 0.10 2.01 7.92 -51.93 -0.41 1.60 15 29 H 0.04 0.90 5.48 -51.93 -0.28 0.61 15 LS Contribution 246.41 15.07 3.71 3.71 Total: -1.00 -27.46 246.41 -5.88 -33.34 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -3.03 Total: 0.42 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -1.91 Total: -4.57 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: -0.35 Total: -35.66 kcal Atomic # 9 Polarization: -12.84 SS G_CDS: 0.11 Total: -12.73 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -4.42 Total: 15.49 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -27.46 -5.88 -33.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261116621.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.200 kcal (2) G-P(sol) polarization free energy of solvation -27.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds