Wall clock time and date at job start Mon Mar 30 2020 20:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35894 * 116.99889 * 2 1 4 4 C 1.38859 * 120.01427 * 359.97438 * 3 2 1 5 5 C 1.38218 * 120.11270 * 180.29913 * 4 3 2 6 6 C 1.38118 * 120.13055 * 359.45106 * 5 4 3 7 7 C 1.50706 * 119.98333 * 180.25306 * 6 5 4 8 8 C 1.39058 * 120.02732 * 0.54856 * 6 5 4 9 9 N 1.39517 * 120.05321 * 179.70423 * 8 6 5 10 10 C 1.34776 * 119.99740 * 204.89872 * 9 8 6 11 11 O 1.21747 * 119.99944 * 5.52353 * 10 9 8 12 12 C 1.46161 * 120.00044 * 185.51950 * 10 9 8 13 13 H 1.07999 * 120.00064 * 5.01512 * 12 10 9 14 14 C 1.40127 * 120.00177 * 185.02314 * 12 10 9 15 15 N 1.30641 * 119.99898 * 354.97736 * 14 12 10 16 16 Si 1.86802 * 120.00334 * 174.98148 * 14 12 10 17 17 H 1.48502 * 109.46768 * 94.99469 * 16 14 12 18 18 H 1.48491 * 109.47294 * 214.99848 * 16 14 12 19 19 H 1.48505 * 109.46593 * 334.99969 * 16 14 12 20 20 C 1.38528 * 120.01079 * 180.02562 * 3 2 1 21 21 H 1.09003 * 109.46927 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47094 * 299.99814 * 1 2 3 23 23 H 1.09000 * 109.46855 * 60.00758 * 1 2 3 24 24 H 1.08005 * 119.95061 * 0.02562 * 4 3 2 25 25 H 1.07998 * 119.93397 * 179.70224 * 5 4 3 26 26 H 1.08998 * 109.47302 * 270.28968 * 7 6 5 27 27 H 1.08992 * 109.47319 * 30.30026 * 7 6 5 28 28 H 1.09003 * 109.46750 * 150.29611 * 7 6 5 29 29 H 0.96997 * 120.00243 * 24.90324 * 9 8 6 30 30 H 0.96998 * 119.99782 * 180.02562 * 15 14 12 31 31 H 1.07997 * 120.06848 * 359.95106 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2900 2.3756 -0.0005 5 6 1.9153 3.6082 -0.0068 6 6 3.2943 3.6861 -0.0011 7 6 3.9726 5.0318 -0.0021 8 6 4.0569 2.5233 -0.0005 9 7 5.4499 2.6013 -0.0010 10 6 6.1818 1.5816 -0.4920 11 8 5.6290 0.6375 -1.0261 12 6 7.6391 1.6092 -0.3832 13 1 8.1250 2.4055 0.1611 14 6 8.4058 0.6027 -0.9853 15 7 7.8165 -0.4122 -1.5593 16 14 10.2705 0.7119 -0.9672 17 1 10.8006 -0.0638 0.1829 18 1 10.8114 0.1535 -2.2324 19 1 10.6818 2.1330 -0.8375 20 6 3.4293 1.2836 -0.0005 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8901 24 1 0.2114 2.3184 -0.0005 25 1 1.3245 4.5122 -0.0120 26 1 4.1360 5.3556 -1.0300 27 1 3.3417 5.7571 0.5114 28 1 4.9311 4.9559 0.5115 29 1 5.8917 3.3894 0.3521 30 1 8.3473 -1.1091 -1.9758 31 1 4.0188 0.3787 -0.0002 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308808461.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:55:46 Heat of formation + Delta-G solvation = -53.134615 kcal Electronic energy + Delta-G solvation = -16176.436266 eV Core-core repulsion = 13423.126692 eV Total energy + Delta-G solvation = -2753.309574 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.80106 -38.22204 -36.44864 -33.31129 -32.50284 -31.41262 -29.33796 -27.48258 -26.12702 -25.43525 -22.41750 -20.75135 -19.70919 -17.94746 -17.21159 -15.83518 -15.38471 -15.30827 -15.06231 -14.50668 -14.13915 -13.67990 -13.13228 -12.99583 -12.60329 -12.44178 -12.10841 -11.79267 -11.58743 -11.33724 -11.11772 -11.04213 -10.68253 -10.57073 -10.36169 -10.33184 -9.33828 -8.88676 -7.82633 -7.50304 -6.98687 -6.34675 -4.82165 2.02280 2.06174 3.07246 3.14529 3.18402 3.68068 3.99954 4.23336 4.56435 4.67468 5.18958 5.34070 5.35671 5.50898 5.53028 5.63318 5.63858 5.75093 5.88631 6.00717 6.28941 6.36805 6.57493 6.86983 6.99059 7.13294 7.22698 7.29224 7.73864 7.90963 8.09640 8.18116 8.84549 9.20317 10.37438 10.55943 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.032209 B = 0.006839 C = 0.005726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.111803 B = 4093.076743 C = 4888.952104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.317 6.317 3 C 0.139 3.861 4 C -0.255 4.255 5 C -0.062 4.062 6 C -0.187 4.187 7 C -0.096 4.096 8 C 0.231 3.769 9 N -0.691 5.691 10 C 0.540 3.460 11 O -0.553 6.553 12 C -0.538 4.538 13 H 0.073 0.927 14 C 0.086 3.914 15 N -0.757 5.757 16 Si 0.913 3.087 17 H -0.271 1.271 18 H -0.277 1.277 19 H -0.263 1.263 20 C -0.172 4.172 21 H 0.093 0.907 22 H 0.050 0.950 23 H 0.050 0.950 24 H 0.116 0.884 25 H 0.116 0.884 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.394 0.606 30 H 0.272 0.728 31 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.884 6.448 3.487 11.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.230 6.230 3 C 0.093 3.907 4 C -0.275 4.275 5 C -0.081 4.081 6 C -0.191 4.191 7 C -0.153 4.153 8 C 0.130 3.870 9 N -0.333 5.333 10 C 0.347 3.653 11 O -0.435 6.435 12 C -0.574 4.574 13 H 0.091 0.909 14 C -0.135 4.135 15 N -0.385 5.385 16 Si 0.737 3.263 17 H -0.196 1.196 18 H -0.202 1.202 19 H -0.187 1.187 20 C -0.194 4.194 21 H 0.111 0.889 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.134 0.866 25 H 0.134 0.866 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.229 0.771 30 H 0.083 0.917 31 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -9.029 5.355 2.990 10.915 hybrid contribution 0.774 0.593 0.107 0.980 sum -8.256 5.948 3.098 10.636 Atomic orbital electron populations 1.22934 0.79527 1.03106 1.00837 1.86094 1.20388 1.27567 1.88988 1.18850 0.92070 0.83520 0.96219 1.20898 0.98943 0.92438 1.15246 1.20360 0.93087 0.96395 0.98248 1.19493 0.93564 0.94122 1.11935 1.20500 0.99724 0.93472 1.01602 1.17488 0.84811 0.91944 0.92770 1.44234 1.02452 1.22982 1.63614 1.18426 0.88033 0.80601 0.78269 1.90609 1.72285 1.34263 1.46332 1.20852 0.89171 1.11253 1.36126 0.90924 1.25750 1.00546 0.93968 0.93252 1.69991 1.36919 1.06650 1.24917 0.86265 0.82322 0.79397 0.78316 1.19637 1.20232 1.18700 1.20811 0.91090 0.99590 1.07899 0.88904 0.93164 0.93107 0.86615 0.86635 0.92014 0.92314 0.92340 0.77096 0.91676 0.82322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.81 101.05 0.99 1.39 16 2 O -0.32 -5.96 10.49 -19.41 -0.20 -6.17 16 3 C 0.14 2.79 6.68 -39.24 -0.26 2.53 16 4 C -0.26 -4.30 9.04 -39.36 -0.36 -4.66 16 5 C -0.06 -1.01 9.69 -39.63 -0.38 -1.39 16 6 C -0.19 -3.37 5.90 -104.36 -0.62 -3.99 16 7 C -0.10 -1.38 9.74 36.01 0.35 -1.03 16 8 C 0.23 5.06 6.41 -83.80 -0.54 4.53 16 9 N -0.69 -15.85 5.15 -11.21 -0.06 -15.91 16 10 C 0.54 15.12 7.54 -13.08 -0.10 15.02 16 11 O -0.55 -17.46 12.19 5.15 0.06 -17.39 16 12 C -0.54 -14.71 9.53 -35.70 -0.34 -15.05 16 13 H 0.07 1.80 7.85 -52.49 -0.41 1.38 16 14 C 0.09 2.33 5.50 -17.35 -0.10 2.24 16 15 N -0.76 -22.07 11.84 55.55 0.66 -21.41 16 16 Si 0.91 19.48 29.56 -169.99 -5.03 14.46 16 17 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 18 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 19 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 20 C -0.17 -4.04 8.65 -39.21 -0.34 -4.38 16 21 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 22 H 0.05 0.55 7.66 -51.93 -0.40 0.16 16 23 H 0.05 0.58 7.66 -51.93 -0.40 0.19 16 24 H 0.12 1.59 6.29 -52.48 -0.33 1.26 16 25 H 0.12 1.49 8.06 -52.49 -0.42 1.06 16 26 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 28 H 0.06 0.81 6.40 -51.93 -0.33 0.47 16 29 H 0.39 7.72 6.89 -40.82 -0.28 7.44 16 30 H 0.27 7.18 8.29 -40.82 -0.34 6.84 16 31 H 0.16 4.32 5.78 -52.49 -0.30 4.02 16 LS Contribution 268.30 15.07 4.04 4.04 Total: -1.00 -33.31 268.30 -5.49 -38.79 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -3.28 Total: 8.37 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: -1.69 Total: -4.79 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.60 Total: -37.31 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.14 Total: -23.56 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.03 Total: 14.46 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -33.31 -5.49 -38.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308808461.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.343 kcal (2) G-P(sol) polarization free energy of solvation -33.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds