Wall clock time and date at job start Mon Mar 30 2020 20:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00061 * 2 1 4 4 H 1.48504 * 109.46904 * 239.99816 * 3 2 1 5 5 H 1.48499 * 109.47064 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47018 * 119.99711 * 3 2 1 7 7 C 1.37874 * 119.99543 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99715 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00170 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.46760 * 184.97799 * 9 7 2 11 11 C 1.49603 * 111.00033 * 64.62314 * 10 9 7 12 12 C 1.56743 * 99.23257 * 117.88992 * 11 10 9 13 13 C 1.55145 * 101.83458 * 43.30843 * 12 11 10 14 14 C 1.50236 * 110.99804 * 176.09115 * 10 9 7 15 15 C 1.53000 * 117.57547 * 63.42380 * 14 10 9 16 16 F 1.39902 * 109.47549 * 64.51886 * 15 14 10 17 17 F 1.39901 * 109.47053 * 184.52020 * 15 14 10 18 18 F 1.39896 * 109.47174 * 304.51511 * 15 14 10 19 19 C 1.55988 * 106.43585 * 317.77251 * 12 11 10 20 20 H 0.96999 * 119.99949 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.47153 * 64.98122 * 9 7 2 22 22 H 1.08996 * 109.46860 * 304.97318 * 9 7 2 23 23 H 1.08998 * 111.44713 * 0.38756 * 11 10 9 24 24 H 1.09002 * 111.44281 * 235.39330 * 11 10 9 25 25 H 1.09001 * 118.44080 * 178.68782 * 12 11 10 26 26 H 1.09002 * 114.44111 * 49.10276 * 13 12 11 27 27 H 1.08997 * 114.44257 * 182.51385 * 13 12 11 28 28 H 1.09000 * 114.52472 * 172.40940 * 19 12 11 29 29 H 1.09003 * 114.51778 * 306.08473 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2010 -3.6131 0.1213 11 6 2.9067 -3.5752 1.4399 12 6 2.4136 -4.9418 2.0283 13 6 2.5499 -5.8836 0.8030 14 6 1.4799 -4.9274 0.2202 15 6 0.6365 -5.3644 -0.9792 16 9 1.4697 -5.5765 -2.0829 17 9 -0.0367 -6.5508 -0.6684 18 9 -0.2949 -4.3658 -1.2831 19 6 0.8962 -5.0492 1.6832 20 1 -0.4850 0.8400 -0.0004 21 1 0.6932 -2.5967 -0.9309 22 1 0.5588 -2.5190 0.8423 23 1 2.5707 -2.7352 2.0478 24 1 3.9892 -3.5636 1.3123 25 1 2.7746 -5.2442 3.0114 26 1 3.5126 -5.8264 0.2950 27 1 2.2119 -6.9047 0.9791 28 1 0.4457 -6.0133 1.9192 29 1 0.2974 -4.1979 2.0070 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335128643.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:55:56 Heat of formation + Delta-G solvation = -89.097830 kcal Electronic energy + Delta-G solvation = -17709.238269 eV Core-core repulsion = 14412.512472 eV Total energy + Delta-G solvation = -3296.725797 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.59105 -47.18172 -47.03262 -40.69657 -33.61837 -31.51315 -28.83232 -26.73657 -25.17549 -24.58577 -22.12465 -19.93811 -19.51020 -17.88342 -17.80162 -16.98130 -16.31855 -14.91686 -14.59817 -14.05531 -13.95593 -13.94171 -13.84608 -13.51638 -13.26104 -13.22108 -12.51387 -12.22151 -12.08667 -11.79399 -11.43434 -11.15768 -10.84592 -10.71497 -10.43477 -10.28332 -9.95599 -9.90625 -9.22615 -8.50753 -7.70005 -6.07042 -4.09870 3.13567 3.31038 3.35510 3.38156 3.99639 4.14257 4.30244 4.39478 4.54317 4.58529 4.94305 5.10970 5.27463 5.36364 5.66407 5.77585 5.92004 5.99237 6.14441 6.21482 6.35913 6.47030 6.73290 7.21283 7.62949 7.80155 8.01123 8.34195 8.96852 9.54133 11.03744 Molecular weight = 235.09amu Principal moments of inertia in cm(-1) A = 0.032916 B = 0.009021 C = 0.007983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.448986 B = 3103.230458 C = 3506.736527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.514 4.514 8 H 0.063 0.937 9 C 0.165 3.835 10 N -0.463 5.463 11 C 0.051 3.949 12 C -0.137 4.137 13 C -0.119 4.119 14 C -0.018 4.018 15 C 0.493 3.507 16 F -0.178 7.178 17 F -0.188 7.188 18 F -0.169 7.169 19 C -0.146 4.146 20 H 0.263 0.737 21 H 0.044 0.956 22 H 0.005 0.995 23 H 0.081 0.919 24 H 0.084 0.916 25 H 0.109 0.891 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.097 0.903 29 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.568 -11.315 3.116 12.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.553 4.553 8 H 0.081 0.919 9 C 0.039 3.961 10 N -0.187 5.187 11 C -0.077 4.077 12 C -0.156 4.156 13 C -0.156 4.156 14 C -0.110 4.110 15 C 0.438 3.562 16 F -0.159 7.159 17 F -0.170 7.170 18 F -0.151 7.151 19 C -0.185 4.185 20 H 0.073 0.927 21 H 0.062 0.938 22 H 0.023 0.977 23 H 0.099 0.901 24 H 0.102 0.898 25 H 0.127 0.873 26 H 0.100 0.900 27 H 0.108 0.892 28 H 0.115 0.885 29 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.762 -11.111 2.558 11.731 hybrid contribution -0.438 0.875 0.374 1.047 sum 2.324 -10.236 2.932 10.898 Atomic orbital electron populations 1.69961 1.06057 1.27027 1.50202 1.24979 0.94878 0.99332 0.95190 0.86526 0.79419 0.82576 0.78696 1.20097 1.21289 1.20222 1.21009 0.93420 0.89683 1.51189 0.91887 1.20264 0.90741 0.87326 0.97749 1.67055 1.22795 0.98828 1.30052 1.23691 0.99336 0.94771 0.89909 1.24595 0.95702 0.97278 0.97987 1.23765 0.98580 0.96633 0.96670 1.25602 0.96834 0.98219 0.90381 1.19399 0.78588 0.74348 0.83823 1.93161 1.71717 1.94736 1.56296 1.93120 1.81745 1.49012 1.93116 1.93225 1.67358 1.60524 1.93953 1.24751 0.96860 1.02983 0.93873 0.92737 0.93791 0.97733 0.90068 0.89801 0.87259 0.89963 0.89205 0.88474 0.89980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.29 55.43 0.74 -25.75 15 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 15 3 Si 0.90 21.49 29.54 -169.99 -5.02 16.46 15 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 15 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 7 C -0.51 -14.35 8.37 -34.44 -0.29 -14.63 15 8 H 0.06 1.73 7.72 -52.49 -0.41 1.32 15 9 C 0.16 4.27 3.92 -4.97 -0.02 4.26 15 10 N -0.46 -9.97 5.62 -215.62 -1.21 -11.18 15 11 C 0.05 0.92 6.37 -0.29 0.00 0.92 15 12 C -0.14 -1.98 6.32 -91.85 -0.58 -2.56 15 13 C -0.12 -1.71 7.31 -28.22 -0.21 -1.91 15 14 C -0.02 -0.33 1.21 -131.98 -0.16 -0.49 15 15 C 0.49 9.22 3.27 37.16 0.12 9.34 15 16 F -0.18 -3.37 17.32 2.25 0.04 -3.33 15 17 F -0.19 -3.10 17.07 2.25 0.04 -3.06 15 18 F -0.17 -3.63 14.69 2.25 0.03 -3.59 15 19 C -0.15 -2.30 7.31 -26.01 -0.19 -2.49 15 20 H 0.26 7.38 8.31 -40.82 -0.34 7.04 15 21 H 0.04 1.25 6.09 -51.93 -0.32 0.93 15 22 H 0.00 0.13 6.87 -51.93 -0.36 -0.23 15 23 H 0.08 1.62 7.32 -51.93 -0.38 1.24 15 24 H 0.08 1.40 8.14 -51.93 -0.42 0.98 15 25 H 0.11 1.27 8.14 -51.93 -0.42 0.85 15 26 H 0.08 1.19 8.10 -51.93 -0.42 0.77 15 27 H 0.09 1.08 7.94 -51.93 -0.41 0.67 15 28 H 0.10 1.28 7.94 -51.93 -0.41 0.87 15 29 H 0.08 1.46 7.07 -51.93 -0.37 1.10 15 LS Contribution 252.02 15.07 3.80 3.80 Total: -1.00 -29.62 252.02 -6.06 -35.68 By element: Atomic # 1 Polarization: 0.06 SS G_CDS: -3.05 Total: -2.99 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -1.42 Total: -6.03 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: -0.48 Total: -36.93 kcal Atomic # 9 Polarization: -10.10 SS G_CDS: 0.11 Total: -9.99 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.62 -6.06 -35.68 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335128643.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.418 kcal (2) G-P(sol) polarization free energy of solvation -29.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds