Wall clock time and date at job start Mon Mar 30 2020 20:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86799 * 120.00303 * 2 1 4 4 H 1.48503 * 109.47052 * 270.00000 * 3 2 1 5 5 H 1.48502 * 109.47078 * 29.99968 * 3 2 1 6 6 H 1.48494 * 109.47086 * 150.00173 * 3 2 1 7 7 C 1.39932 * 119.99777 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00202 * 197.75199 * 7 2 1 9 9 C 1.41406 * 119.99937 * 17.74947 * 7 2 1 10 10 C 1.40784 * 120.20880 * 24.59040 * 9 7 2 11 11 C 1.37647 * 119.89722 * 180.27002 * 10 9 7 12 12 C 1.38524 * 120.32163 * 359.49868 * 11 10 9 13 13 C 1.50703 * 119.78954 * 180.27478 * 12 11 10 14 14 C 1.52996 * 109.46962 * 265.00225 * 13 12 11 15 15 C 1.50703 * 109.46962 * 179.97438 * 14 13 12 16 16 O 1.20823 * 120.00082 * 359.97438 * 15 14 13 17 17 O 1.34234 * 120.00133 * 180.02562 * 15 14 13 18 18 C 1.39298 * 120.42568 * 0.25740 * 12 11 10 19 19 N 1.39678 * 119.95225 * 179.97438 * 18 12 11 20 20 C 1.38319 * 120.09279 * 359.97438 * 18 12 11 21 21 H 0.96998 * 119.99204 * 359.97438 * 1 2 3 22 22 H 1.08000 * 120.05607 * 0.02622 * 10 9 7 23 23 H 1.07996 * 119.84489 * 179.77439 * 11 10 9 24 24 H 1.09001 * 109.46645 * 24.99905 * 13 12 11 25 25 H 1.08995 * 109.46997 * 145.00338 * 13 12 11 26 26 H 1.09007 * 109.47562 * 299.99596 * 14 13 12 27 27 H 1.09000 * 109.47556 * 59.99975 * 14 13 12 28 28 H 0.96693 * 116.99814 * 179.97438 * 17 15 14 29 29 H 0.97002 * 120.00471 * 0.02562 * 19 18 12 30 30 H 0.96998 * 120.00234 * 179.97438 * 19 18 12 31 31 H 1.07998 * 120.16142 * 179.97438 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.4900 2.0463 -1.4001 5 1 1.4399 2.6527 0.7000 6 1 3.5400 1.4400 0.7000 7 6 2.0080 -1.2119 -0.0005 8 1 3.0494 -1.2343 0.2846 9 6 1.3514 -2.4071 -0.3744 10 6 0.2209 -2.3621 -1.2122 11 6 -0.4167 -3.5291 -1.5676 12 6 0.0547 -4.7498 -1.1133 13 6 -0.6489 -6.0206 -1.5149 14 6 -1.6508 -6.4141 -0.4277 15 6 -2.3549 -7.6846 -0.8296 16 8 -2.0835 -8.2199 -1.8782 17 8 -3.2843 -8.2208 -0.0231 18 6 1.1752 -4.8105 -0.2879 19 7 1.6417 -6.0467 0.1649 20 6 1.8264 -3.6482 0.0839 21 1 -0.4849 0.8401 0.0004 22 1 -0.1480 -1.4131 -1.5724 23 1 -1.2860 -3.4932 -2.2074 24 1 -1.1767 -5.8619 -2.4553 25 1 0.0839 -6.8178 -1.6394 26 1 -1.1230 -6.5728 0.5128 27 1 -2.3836 -5.6169 -0.3031 28 1 -3.7089 -9.0359 -0.3237 29 1 1.1858 -6.8623 -0.0957 30 1 2.4221 -6.0898 0.7394 31 1 2.6950 -3.6939 0.7241 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396111981.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:56:13 Heat of formation + Delta-G solvation = -91.632267 kcal Electronic energy + Delta-G solvation = -15840.593422 eV Core-core repulsion = 13085.614464 eV Total energy + Delta-G solvation = -2754.978958 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.11974 -38.05210 -36.08602 -34.64163 -32.87180 -32.41360 -29.42388 -27.15238 -26.14723 -23.41596 -21.00498 -20.80745 -19.59018 -17.96642 -17.33957 -16.39125 -16.24484 -15.65197 -15.18857 -14.63415 -13.90608 -13.33295 -13.22931 -12.80413 -12.59075 -12.24507 -12.00398 -11.54868 -11.46347 -11.13867 -11.10676 -10.92510 -10.54814 -10.41145 -10.33739 -9.73373 -9.43559 -9.35384 -8.88832 -7.35208 -6.74495 -6.27430 -4.33508 2.33839 2.77652 3.08415 3.12115 3.13881 3.25590 3.39713 3.94934 4.64617 4.86321 5.24658 5.40517 5.56436 5.82939 5.98880 6.14558 6.31177 6.40012 6.52115 6.66065 7.04169 7.09202 7.11014 7.32894 7.41545 7.83901 7.91679 8.00113 8.10407 8.25005 8.48608 8.71128 8.79771 8.97041 9.07829 10.20798 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.047188 B = 0.005344 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.229272 B = 5238.204444 C = 5540.717609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.789 5.789 2 C 0.078 3.922 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.462 4.462 8 H 0.076 0.924 9 C 0.144 3.856 10 C -0.200 4.200 11 C -0.063 4.063 12 C -0.282 4.282 13 C -0.031 4.031 14 C -0.110 4.110 15 C 0.475 3.525 16 O -0.522 6.522 17 O -0.522 6.522 18 C 0.238 3.762 19 N -0.896 5.896 20 C -0.295 4.295 21 H 0.280 0.720 22 H 0.115 0.885 23 H 0.087 0.913 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.101 0.899 27 H 0.105 0.895 28 H 0.402 0.598 29 H 0.382 0.618 30 H 0.385 0.615 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.020 -8.219 0.688 8.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.492 4.492 8 H 0.094 0.906 9 C 0.141 3.859 10 C -0.220 4.220 11 C -0.082 4.082 12 C -0.287 4.287 13 C -0.068 4.068 14 C -0.148 4.148 15 C 0.318 3.682 16 O -0.410 6.410 17 O -0.334 6.334 18 C 0.137 3.863 19 N -0.437 5.437 20 C -0.320 4.320 21 H 0.090 0.910 22 H 0.133 0.867 23 H 0.105 0.895 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.119 0.881 27 H 0.123 0.877 28 H 0.260 0.740 29 H 0.210 0.790 30 H 0.211 0.789 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.992 -7.752 0.522 8.325 hybrid contribution 0.124 -0.088 0.040 0.157 sum -2.868 -7.840 0.563 8.367 Atomic orbital electron populations 1.69859 1.07562 1.29092 1.34896 1.25908 0.94695 1.01238 0.92205 0.86341 0.80509 0.80701 0.79317 1.19274 1.20365 1.18673 1.19600 0.98067 0.91302 1.40188 0.90565 1.17361 0.90226 0.91351 0.86957 1.21164 1.00546 0.96653 1.03635 1.20330 0.97499 0.92203 0.98134 1.18411 1.02838 0.93349 1.14146 1.19835 0.95313 0.95996 0.95699 1.21702 0.99276 0.91006 1.02792 1.24185 0.76374 0.86394 0.81198 1.90687 1.63214 1.62372 1.24765 1.84615 1.52427 1.44008 1.52320 1.17277 0.92110 0.84813 0.92123 1.42473 1.35941 1.05641 1.59634 1.20385 1.06771 0.91590 1.13206 0.90954 0.86712 0.89514 0.91997 0.92676 0.88054 0.87652 0.73989 0.79040 0.78859 0.89253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.27 10.96 55.55 0.61 -19.66 16 2 C 0.08 1.94 5.14 -17.34 -0.09 1.85 16 3 Si 0.91 18.57 29.59 -169.99 -5.03 13.54 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.46 -12.23 9.05 -37.74 -0.34 -12.57 16 8 H 0.08 1.95 7.91 -52.49 -0.41 1.54 16 9 C 0.14 3.82 5.57 -106.85 -0.60 3.23 16 10 C -0.20 -5.14 8.69 -38.84 -0.34 -5.48 16 11 C -0.06 -1.43 9.64 -39.69 -0.38 -1.82 16 12 C -0.28 -5.95 5.17 -104.12 -0.54 -6.49 16 13 C -0.03 -0.53 4.05 -27.88 -0.11 -0.65 16 14 C -0.11 -1.64 5.79 -27.88 -0.16 -1.80 16 15 C 0.48 6.69 8.33 36.01 0.30 6.99 16 16 O -0.52 -8.73 16.74 -18.75 -0.31 -9.05 16 17 O -0.52 -5.83 13.42 -39.27 -0.53 -6.36 16 18 C 0.24 5.09 6.72 -83.86 -0.56 4.53 16 19 N -0.90 -15.04 8.98 32.37 0.29 -14.75 16 20 C -0.30 -7.16 9.63 -38.67 -0.37 -7.53 16 21 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 22 H 0.12 3.07 6.16 -52.49 -0.32 2.74 16 23 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 24 H 0.06 1.09 8.00 -51.93 -0.42 0.67 16 25 H 0.05 0.93 6.75 -51.93 -0.35 0.58 16 26 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 27 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 28 H 0.40 2.65 9.10 45.56 0.41 3.06 16 29 H 0.38 5.69 6.91 -40.82 -0.28 5.41 16 30 H 0.39 5.77 8.84 -40.82 -0.36 5.41 16 31 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 273.18 15.07 4.12 4.12 Total: -1.00 -29.60 273.18 -6.61 -36.21 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: -2.56 Total: 15.67 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -3.20 Total: -19.73 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: 0.90 Total: -34.41 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -0.84 Total: -15.41 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.60 -6.61 -36.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396111981.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.419 kcal (2) G-P(sol) polarization free energy of solvation -29.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds