Wall clock time and date at job start Mon Mar 30 2020 20:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42904 * 114.00051 * 2 1 4 4 N 1.46901 * 109.46851 * 60.05958 * 3 2 1 5 5 C 1.50701 * 109.46992 * 180.02562 * 3 2 1 6 6 H 1.08002 * 119.99942 * 124.70343 * 5 3 2 7 7 C 1.37879 * 120.00184 * 304.70277 * 5 3 2 8 8 N 1.31508 * 119.99955 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99760 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47404 * 60.00346 * 9 7 5 11 11 H 1.48503 * 109.47019 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47125 * 299.99650 * 9 7 5 13 13 C 1.50695 * 109.46890 * 300.06026 * 3 2 1 14 14 C 1.37910 * 120.08854 * 121.32768 * 13 3 2 15 15 C 1.38377 * 120.17279 * 179.97438 * 14 13 3 16 16 C 1.38426 * 120.34987 * 0.02562 * 15 14 13 17 17 C 1.37866 * 120.17214 * 359.97438 * 16 15 14 18 18 C 1.39841 * 120.08946 * 301.57374 * 13 3 2 19 19 C 1.47168 * 120.16953 * 0.02671 * 18 13 3 20 20 O 1.21251 * 119.99981 * 4.75908 * 19 18 13 21 21 H 1.09008 * 109.47064 * 304.93108 * 1 2 3 22 22 H 1.08994 * 109.47531 * 64.93133 * 1 2 3 23 23 H 1.08999 * 109.47524 * 184.93801 * 1 2 3 24 24 H 1.00905 * 110.99413 * 174.87143 * 4 3 2 25 25 H 1.00900 * 111.00167 * 298.82539 * 4 3 2 26 26 H 0.97003 * 119.99834 * 179.97438 * 8 7 5 27 27 H 1.08000 * 119.91207 * 359.97438 * 14 13 3 28 28 H 1.08006 * 119.82445 * 179.97438 * 15 14 13 29 29 H 1.08000 * 119.91496 * 180.02562 * 16 15 14 30 30 H 1.07998 * 120.08531 * 180.02562 * 17 16 15 31 31 H 1.07992 * 119.99777 * 184.75088 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 7 1.5778 2.0339 1.2002 5 6 3.5125 1.1864 -0.0006 6 1 4.0926 1.6748 -0.7697 7 6 4.1465 0.4541 0.9806 8 7 3.4402 -0.1409 1.9168 9 14 6.0087 0.3073 0.9801 10 1 6.6120 1.6593 1.0954 11 1 6.4397 -0.5273 2.1304 12 1 6.4548 -0.3277 -0.2860 13 6 1.5643 2.0538 -1.2297 14 6 0.8864 3.2482 -1.1043 15 6 0.4766 3.9371 -2.2323 16 6 0.7426 3.4340 -3.4942 17 6 1.4194 2.2413 -3.6362 18 6 1.8324 1.5364 -2.5009 19 6 2.5500 0.2595 -2.6435 20 8 2.8344 -0.3893 -1.6594 21 1 -0.3634 0.5885 0.8426 22 1 -0.3634 0.4354 -0.9308 23 1 -0.3634 -1.0238 0.0885 24 1 2.0405 2.9282 1.2666 25 1 0.5749 2.1437 1.2149 26 1 3.8862 -0.6564 2.6069 27 1 0.6747 3.6469 -0.1232 28 1 -0.0543 4.8718 -2.1276 29 1 0.4200 3.9777 -4.3698 30 1 1.6265 1.8503 -4.6214 31 1 2.8232 -0.0997 -3.6246 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238376607.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:56:13 Heat of formation + Delta-G solvation = -13.672710 kcal Electronic energy + Delta-G solvation = -17451.663432 eV Core-core repulsion = 14700.065055 eV Total energy + Delta-G solvation = -2751.598378 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.100 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.53274 -37.01907 -36.42365 -32.76930 -31.62620 -30.75640 -29.23805 -26.73104 -24.74220 -24.00628 -22.56412 -20.44717 -19.44594 -16.89133 -16.52928 -15.70394 -14.91227 -14.73151 -14.28226 -14.10632 -13.74155 -13.41452 -13.22322 -13.15531 -12.68914 -12.20034 -11.92630 -11.76702 -11.39957 -10.87564 -10.78779 -10.60589 -10.18757 -9.74898 -9.31373 -8.66250 -8.49510 -8.38445 -8.15936 -8.07139 -7.23658 -5.76024 -3.88164 1.39274 1.85982 3.39060 3.42232 3.45590 3.48033 4.42259 4.57037 5.06312 5.23210 5.25503 5.36705 5.44815 5.61503 5.82021 5.89509 6.16750 6.18657 6.30699 6.44064 6.46155 6.48500 6.67766 6.78314 6.86183 7.12026 7.39673 7.83084 7.95011 8.52656 8.67278 8.80029 9.01627 9.26940 9.74428 11.27182 Molecular weight = 235.10amu Principal moments of inertia in cm(-1) A = 0.028097 B = 0.011143 C = 0.010374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.297454 B = 2512.156698 C = 2698.308240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.306 6.306 3 C 0.445 3.555 4 N -0.828 5.828 5 C -0.498 4.498 6 H 0.053 0.947 7 C 0.102 3.898 8 N -0.815 5.815 9 Si 0.880 3.120 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.277 1.277 13 C -0.061 4.061 14 C -0.145 4.145 15 C -0.106 4.106 16 C -0.151 4.151 17 C -0.092 4.092 18 C -0.148 4.148 19 C 0.309 3.691 20 O -0.338 6.338 21 H 0.027 0.973 22 H 0.009 0.991 23 H 0.059 0.941 24 H 0.335 0.665 25 H 0.297 0.703 26 H 0.254 0.746 27 H 0.118 0.882 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.120 0.880 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.565 5.484 -8.635 11.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.221 6.221 3 C 0.317 3.683 4 N -0.364 5.364 5 C -0.536 4.536 6 H 0.071 0.929 7 C -0.108 4.108 8 N -0.448 5.448 9 Si 0.708 3.292 10 H -0.205 1.205 11 H -0.213 1.213 12 H -0.203 1.203 13 C -0.065 4.065 14 C -0.164 4.164 15 C -0.124 4.124 16 C -0.169 4.169 17 C -0.110 4.110 18 C -0.150 4.150 19 C 0.160 3.840 20 O -0.203 6.203 21 H 0.046 0.954 22 H 0.028 0.972 23 H 0.078 0.922 24 H 0.149 0.851 25 H 0.110 0.890 26 H 0.064 0.936 27 H 0.136 0.864 28 H 0.132 0.868 29 H 0.133 0.867 30 H 0.138 0.862 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.978 4.149 -7.466 9.886 hybrid contribution 0.280 1.155 -0.939 1.515 sum -4.697 5.304 -8.405 10.993 Atomic orbital electron populations 1.22499 0.88047 1.00174 0.97146 1.88701 1.12990 1.27302 1.93086 1.18261 0.92516 0.78841 0.78651 1.59149 1.07194 1.24806 1.45221 1.20191 0.86828 1.34416 1.12125 0.92859 1.24818 0.96831 0.94226 0.94947 1.70137 1.34161 1.28485 1.11975 0.86900 0.86939 0.77865 0.77546 1.20498 1.21289 1.20308 1.22570 0.90719 0.94521 0.98667 1.21136 1.00380 0.96292 0.98550 1.21182 0.99277 0.99098 0.92835 1.20902 1.01909 0.97067 0.96983 1.21316 0.97193 0.94729 0.97778 1.21009 1.01761 0.99235 0.92951 1.23543 0.80708 0.86464 0.93260 1.90918 1.37849 1.51218 1.40269 0.95423 0.97242 0.92226 0.85118 0.89009 0.93616 0.86394 0.86794 0.86667 0.86164 0.91133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 10.38 101.05 1.05 1.48 16 2 O -0.31 -8.08 6.80 -59.93 -0.41 -8.49 16 3 C 0.45 11.01 0.39 -70.02 -0.03 10.98 16 4 N -0.83 -19.25 7.79 -5.02 -0.04 -19.29 16 5 C -0.50 -13.75 5.28 -34.44 -0.18 -13.93 16 6 H 0.05 1.49 7.64 -52.49 -0.40 1.09 16 7 C 0.10 2.91 5.34 -17.82 -0.10 2.81 16 8 N -0.82 -24.28 12.32 55.43 0.68 -23.59 16 9 Si 0.88 21.92 29.54 -169.99 -5.02 16.90 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 C -0.06 -1.29 3.58 -104.15 -0.37 -1.66 16 14 C -0.15 -2.61 9.03 -39.65 -0.36 -2.97 16 15 C -0.11 -1.60 10.04 -39.46 -0.40 -2.00 16 16 C -0.15 -2.16 10.03 -39.65 -0.40 -2.56 16 17 C -0.09 -1.43 9.80 -39.11 -0.38 -1.81 16 18 C -0.15 -2.89 5.72 -105.06 -0.60 -3.49 16 19 C 0.31 6.26 10.98 34.36 0.38 6.64 16 20 O -0.34 -8.55 11.24 -19.12 -0.21 -8.76 16 21 H 0.03 0.57 6.45 -51.92 -0.33 0.24 16 22 H 0.01 0.19 7.32 -51.93 -0.38 -0.19 16 23 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 24 H 0.33 7.34 8.25 -39.29 -0.32 7.02 16 25 H 0.30 6.17 6.24 -39.29 -0.25 5.92 16 26 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 27 H 0.12 1.97 6.19 -52.49 -0.32 1.65 16 28 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 29 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 30 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 31 H 0.07 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 260.35 15.07 3.92 3.92 Total: -1.00 -32.70 260.35 -5.72 -38.42 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -3.26 Total: 7.40 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -1.39 Total: -6.51 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: 0.64 Total: -42.89 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.62 Total: -17.25 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -32.70 -5.72 -38.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238376607.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.747 kcal (2) G-P(sol) polarization free energy of solvation -32.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds