Wall clock time and date at job start Mon Mar 30 2020 20:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46896 * 109.47410 * 2 1 4 4 C 1.46891 * 111.00215 * 163.82170 * 3 2 1 5 5 C 1.50699 * 109.47144 * 287.84693 * 4 3 2 6 6 H 1.07996 * 120.00077 * 354.84411 * 5 4 3 7 7 C 1.37876 * 120.00132 * 175.11700 * 5 4 3 8 8 N 1.31517 * 120.00424 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99948 * 359.97438 * 7 5 4 10 10 H 1.48503 * 109.46641 * 90.00179 * 9 7 5 11 11 H 1.48498 * 109.47210 * 210.00017 * 9 7 5 12 12 H 1.48492 * 109.47123 * 330.00378 * 9 7 5 13 13 C 1.39004 * 110.99866 * 287.77941 * 3 2 1 14 14 N 1.32431 * 119.70266 * 299.77174 * 13 3 2 15 15 C 1.31946 * 121.62418 * 179.97438 * 14 13 3 16 16 C 1.38061 * 120.85303 * 0.02757 * 15 14 13 17 17 C 1.38839 * 119.33064 * 359.97136 * 16 15 14 18 18 C 1.38340 * 118.50420 * 359.75431 * 17 16 15 19 19 C 1.50705 * 120.45060 * 180.26256 * 18 17 16 20 20 N 1.46899 * 109.47157 * 257.61602 * 19 18 17 21 21 H 1.09000 * 109.47501 * 305.37814 * 1 2 3 22 22 H 1.09003 * 109.47239 * 65.37947 * 1 2 3 23 23 H 1.09004 * 109.47173 * 185.37385 * 1 2 3 24 24 H 1.08999 * 109.47212 * 239.99300 * 2 1 3 25 25 H 1.09005 * 109.46587 * 119.99789 * 2 1 3 26 26 H 1.08996 * 109.47501 * 167.84881 * 4 3 2 27 27 H 1.09000 * 109.47330 * 47.84600 * 4 3 2 28 28 H 0.96998 * 120.00615 * 180.02562 * 8 7 5 29 29 H 1.08000 * 119.57367 * 179.97438 * 15 14 13 30 30 H 1.07997 * 120.33895 * 179.97438 * 16 15 14 31 31 H 1.08002 * 120.75286 * 180.02562 * 17 16 15 32 32 H 1.08990 * 109.47374 * 17.62194 * 19 18 17 33 33 H 1.09004 * 109.47055 * 137.62439 * 19 18 17 34 34 H 1.00896 * 111.00241 * 180.02562 * 20 19 18 35 35 H 1.00905 * 111.00174 * 303.95783 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4369 1.4422 0.3821 5 6 3.5721 1.1542 1.8551 6 1 2.6890 1.0315 2.4646 7 6 4.8231 1.0529 2.4258 8 7 4.9411 0.8010 3.7112 9 14 6.3505 1.2719 1.3729 10 1 6.7437 2.7039 1.3632 11 1 7.4590 0.4581 1.9334 12 1 6.0631 0.8281 -0.0146 13 6 1.8122 1.9867 -1.2357 14 7 2.3739 1.4718 -2.3189 15 6 2.2020 2.0117 -3.5105 16 6 1.4247 3.1414 -3.6706 17 6 0.8179 3.7124 -2.5600 18 6 1.0117 3.1207 -1.3246 19 6 0.3690 3.7004 -0.0909 20 7 1.3713 4.4519 0.6764 21 1 -0.3634 0.5950 0.8379 22 1 -0.3634 0.4281 -0.9343 23 1 -0.3634 -1.0232 0.0962 24 1 1.8933 -0.5139 -0.8899 25 1 1.8932 -0.5138 0.8901 26 1 3.8310 2.4357 0.1686 27 1 3.9968 0.6994 -0.1862 28 1 5.8212 0.7301 4.1128 29 1 2.6761 1.5645 -4.3717 30 1 1.2899 3.5766 -4.6497 31 1 0.2047 4.5959 -2.6589 32 1 -0.4410 4.3686 -0.3830 33 1 -0.0295 2.8937 0.5244 34 1 0.9648 4.8504 1.5094 35 1 2.1636 3.8699 0.9038 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000723158564.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:57:17 Heat of formation + Delta-G solvation = 44.361814 kcal Electronic energy + Delta-G solvation = -17087.937715 eV Core-core repulsion = 14506.981749 eV Total energy + Delta-G solvation = -2580.955966 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.27396 -36.62906 -34.71170 -32.65269 -31.60662 -30.53201 -29.76348 -26.83096 -24.76658 -23.32311 -22.13162 -21.33542 -20.14232 -17.19965 -16.36205 -16.23813 -15.58014 -15.11161 -14.57025 -14.21512 -13.93408 -13.72650 -13.34081 -12.92109 -12.75346 -12.61928 -12.42947 -11.88965 -11.53332 -11.31431 -11.18040 -10.74159 -10.47990 -10.40671 -10.02691 -9.51460 -9.44037 -9.13860 -8.61006 -8.56101 -8.14647 -7.74300 -6.10007 -4.08640 1.38709 1.56338 3.28637 3.35958 3.41733 4.03678 4.35792 4.40791 4.80576 5.02100 5.20059 5.22354 5.24367 5.39817 5.49726 5.67304 5.77511 5.81511 5.86977 6.02334 6.15587 6.28867 6.35726 6.49578 6.61660 6.66022 6.78249 6.91507 6.96332 7.53072 7.58727 7.70364 7.93667 8.07135 8.33463 8.58542 8.97437 9.51530 11.02312 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.023933 B = 0.008837 C = 0.008465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.644728 B = 3167.872719 C = 3306.872624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.058 3.942 3 N -0.481 5.481 4 C 0.170 3.830 5 C -0.512 4.512 6 H 0.082 0.918 7 C 0.074 3.926 8 N -0.897 5.897 9 Si 0.869 3.131 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.265 1.265 13 C 0.317 3.683 14 N -0.513 5.513 15 C 0.102 3.898 16 C -0.192 4.192 17 C -0.064 4.064 18 C -0.110 4.110 19 C 0.119 3.881 20 N -0.848 5.848 21 H 0.060 0.940 22 H 0.039 0.961 23 H 0.053 0.947 24 H 0.038 0.962 25 H 0.094 0.906 26 H 0.021 0.979 27 H 0.007 0.993 28 H 0.264 0.736 29 H 0.147 0.853 30 H 0.128 0.872 31 H 0.131 0.869 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.337 0.663 35 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.952 3.812 -11.473 15.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.068 4.068 3 N -0.205 5.205 4 C 0.046 3.954 5 C -0.550 4.550 6 H 0.100 0.900 7 C -0.129 4.129 8 N -0.535 5.535 9 Si 0.696 3.304 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.190 1.190 13 C 0.088 3.912 14 N -0.225 5.225 15 C -0.057 4.057 16 C -0.212 4.212 17 C -0.090 4.090 18 C -0.114 4.114 19 C -0.012 4.012 20 N -0.380 5.380 21 H 0.079 0.921 22 H 0.058 0.942 23 H 0.072 0.928 24 H 0.057 0.943 25 H 0.112 0.888 26 H 0.039 0.961 27 H 0.025 0.975 28 H 0.074 0.926 29 H 0.164 0.836 30 H 0.146 0.854 31 H 0.149 0.851 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.149 0.851 35 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -8.495 3.735 -11.503 14.779 hybrid contribution 0.761 -0.243 -0.502 0.944 sum -7.734 3.491 -12.005 14.701 Atomic orbital electron populations 1.21776 0.96292 1.00876 1.01125 1.22044 0.94299 0.88216 1.02282 1.60333 1.22728 1.18222 1.19209 1.20203 0.81541 0.96303 0.97393 1.20945 0.94245 1.48806 0.91016 0.89962 1.24834 0.98654 0.94604 0.94773 1.69879 1.23912 1.49119 1.10600 0.86945 0.83354 0.78660 0.81442 1.20082 1.21123 1.18969 1.20214 0.90576 0.91408 0.88956 1.67897 1.21766 1.33242 0.99607 1.22492 0.95438 0.93110 0.94611 1.21977 1.01129 0.98664 0.99463 1.21370 0.97648 0.98282 0.91738 1.20550 0.99291 0.95776 0.95811 1.20366 0.93347 0.95671 0.91788 1.58937 1.11491 1.40231 1.27299 0.92067 0.94224 0.92781 0.94322 0.88794 0.96141 0.97543 0.92573 0.83597 0.85363 0.85125 0.91730 0.93281 0.85132 0.82411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.90 37.16 0.37 -1.92 16 2 C 0.06 1.14 5.49 -3.83 -0.02 1.12 16 3 N -0.48 -10.03 3.19 -174.58 -0.56 -10.59 16 4 C 0.17 4.16 3.20 -4.98 -0.02 4.14 16 5 C -0.51 -14.04 8.88 -34.44 -0.31 -14.35 16 6 H 0.08 2.43 8.03 -52.49 -0.42 2.01 16 7 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 8 N -0.90 -26.85 13.96 55.43 0.77 -26.08 16 9 Si 0.87 21.63 27.57 -169.99 -4.69 16.94 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.27 -6.56 6.40 56.52 0.36 -6.20 16 13 C 0.32 6.10 4.42 -155.01 -0.68 5.41 16 14 N -0.51 -9.77 9.50 -12.44 -0.12 -9.88 16 15 C 0.10 1.54 11.17 -17.57 -0.20 1.35 16 16 C -0.19 -2.50 10.10 -39.42 -0.40 -2.90 16 17 C -0.06 -0.89 9.80 -39.32 -0.39 -1.27 16 18 C -0.11 -1.84 5.44 -104.26 -0.57 -2.40 16 19 C 0.12 1.84 6.53 -4.97 -0.03 1.81 16 20 N -0.85 -14.07 9.61 -11.41 -0.11 -14.18 16 21 H 0.06 0.98 7.93 -51.93 -0.41 0.57 16 22 H 0.04 0.62 7.74 -51.93 -0.40 0.22 16 23 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.04 0.77 7.52 -51.93 -0.39 0.38 16 25 H 0.09 2.00 7.16 -51.93 -0.37 1.63 16 26 H 0.02 0.52 7.39 -51.93 -0.38 0.14 16 27 H 0.01 0.17 6.76 -51.93 -0.35 -0.18 16 28 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 29 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 31 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 32 H 0.06 0.84 8.02 -51.93 -0.42 0.42 16 33 H 0.05 0.80 7.69 -51.93 -0.40 0.40 16 34 H 0.34 4.86 9.08 -39.29 -0.36 4.51 16 35 H 0.36 7.09 7.83 -39.29 -0.31 6.78 16 LS Contribution 290.61 15.07 4.38 4.38 Total: -1.00 -30.39 290.61 -7.73 -38.12 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -5.08 Total: 8.31 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: -2.34 Total: -7.02 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: -0.01 Total: -60.73 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.69 Total: 16.94 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.39 -7.73 -38.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723158564.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.480 kcal (2) G-P(sol) polarization free energy of solvation -30.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds