Wall clock time and date at job start Mon Mar 30 2020 20:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47587 * 2 1 4 4 C 1.52995 * 109.47142 * 120.00319 * 2 1 3 5 5 C 1.50699 * 109.47282 * 184.99732 * 4 2 1 6 6 H 1.08001 * 119.99957 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99946 * 180.02562 * 5 4 2 8 8 N 1.31513 * 120.00190 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99552 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47404 * 59.99857 * 9 7 5 11 11 H 1.48509 * 109.46705 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47357 * 299.99481 * 9 7 5 13 13 O 1.42904 * 109.46768 * 240.00245 * 2 1 3 14 14 C 1.35910 * 116.99799 * 85.26301 * 13 2 1 15 15 C 1.39144 * 120.47724 * 354.63539 * 14 13 2 16 16 C 1.38528 * 118.37602 * 179.97438 * 15 14 13 17 17 C 1.38260 * 119.22414 * 359.97438 * 16 15 14 18 18 C 1.50696 * 119.56077 * 179.72463 * 17 16 15 19 19 N 1.46897 * 109.47157 * 94.99519 * 18 17 16 20 20 N 1.31852 * 120.88333 * 0.02562 * 17 16 15 21 21 C 1.31835 * 121.77990 * 0.02562 * 20 17 16 22 22 H 1.09001 * 109.46962 * 59.99552 * 1 2 3 23 23 H 1.08998 * 109.47435 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47026 * 299.99781 * 1 2 3 25 25 H 1.08997 * 109.47544 * 305.00084 * 4 2 1 26 26 H 1.09004 * 109.46980 * 65.00140 * 4 2 1 27 27 H 0.96999 * 119.99938 * 180.02562 * 8 7 5 28 28 H 1.08005 * 120.80809 * 359.95312 * 15 14 13 29 29 H 1.07998 * 120.39068 * 180.02562 * 16 15 14 30 30 H 1.08996 * 109.47281 * 215.00731 * 18 17 16 31 31 H 1.09010 * 109.46685 * 334.99716 * 18 17 16 32 32 H 1.00904 * 110.99599 * 56.05129 * 19 18 17 33 33 H 1.00900 * 110.99729 * 180.02562 * 19 18 17 34 34 H 1.08002 * 119.66061 * 180.02562 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3126 6 1 4.0790 -0.0863 0.5391 7 6 4.2304 -1.1938 2.3577 8 7 3.5764 -1.8381 3.2994 9 14 6.0920 -1.0614 2.4367 10 1 6.4844 0.3695 2.4971 11 1 6.5870 -1.7616 3.6491 12 1 6.6845 -1.6864 1.2269 13 8 2.0063 -0.6736 -1.1669 14 6 2.1176 0.0641 -2.3029 15 6 1.6733 1.3823 -2.3347 16 6 1.8085 2.0943 -3.5153 17 6 2.3763 1.4771 -4.6146 18 6 2.5213 2.2425 -5.9045 19 7 3.8654 2.8309 -5.9763 20 7 2.7873 0.2259 -4.5510 21 6 2.6758 -0.4863 -3.4472 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.6054 -0.2619 2.1369 26 1 1.7516 -1.7716 1.2054 27 1 4.0608 -2.2448 4.0348 28 1 1.2335 1.8391 -1.4604 29 1 1.4750 3.1197 -3.5762 30 1 2.3751 1.5663 -6.7467 31 1 1.7748 3.0360 -5.9420 32 1 4.5763 2.1215 -5.8787 33 1 3.9875 3.3501 -6.8328 34 1 3.0243 -1.5085 -3.4332 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695786421.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:58:43 Heat of formation + Delta-G solvation = -16.458085 kcal Electronic energy + Delta-G solvation = -16294.456609 eV Core-core repulsion = 13613.144632 eV Total energy + Delta-G solvation = -2681.311977 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 236.127 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.37687 -38.18005 -34.72049 -33.47700 -31.99727 -31.68006 -29.66677 -27.54255 -25.26902 -23.48847 -23.33141 -21.82372 -19.96409 -17.80355 -16.74508 -16.45342 -16.21824 -15.29400 -14.81731 -14.57415 -14.45568 -14.15657 -13.62179 -13.30675 -12.87452 -12.43452 -12.38195 -11.97132 -11.74511 -11.55623 -11.45557 -11.13755 -10.76277 -10.52502 -10.17901 -9.59674 -9.39835 -9.37606 -9.17473 -8.84608 -8.41647 -7.90420 -6.04969 -4.06914 1.38340 1.50448 3.33260 3.37048 3.41002 3.71811 3.95502 4.43837 4.46858 4.75133 4.79276 4.98595 5.21559 5.28538 5.32522 5.48791 5.59053 5.60797 5.67093 5.84107 5.96189 6.08973 6.25552 6.36295 6.54104 6.65795 6.68025 6.94064 7.28598 7.41408 7.51488 7.90786 7.93908 8.20680 8.31171 8.96257 9.56929 11.06307 Molecular weight = 236.13amu Principal moments of inertia in cm(-1) A = 0.027348 B = 0.006040 C = 0.005279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.603748 B = 4634.597433 C = 5302.550252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.084 3.916 3 H 0.063 0.937 4 C 0.026 3.974 5 C -0.517 4.517 6 H 0.055 0.945 7 C 0.059 3.941 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.276 1.276 13 O -0.283 6.283 14 C 0.107 3.893 15 C -0.176 4.176 16 C -0.109 4.109 17 C 0.062 3.938 18 C 0.124 3.876 19 N -0.846 5.846 20 N -0.447 5.447 21 C 0.062 3.938 22 H 0.047 0.953 23 H 0.063 0.937 24 H 0.069 0.931 25 H 0.040 0.960 26 H 0.030 0.970 27 H 0.262 0.738 28 H 0.141 0.859 29 H 0.131 0.869 30 H 0.041 0.959 31 H 0.082 0.918 32 H 0.347 0.653 33 H 0.341 0.659 34 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.725 7.333 -14.074 16.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.029 3.971 3 H 0.081 0.919 4 C -0.011 4.011 5 C -0.555 4.555 6 H 0.073 0.927 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.720 3.280 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.201 1.201 13 O -0.194 6.194 14 C 0.057 3.943 15 C -0.203 4.203 16 C -0.129 4.129 17 C -0.076 4.076 18 C -0.007 4.007 19 N -0.377 5.377 20 N -0.157 5.157 21 C -0.097 4.097 22 H 0.066 0.934 23 H 0.083 0.917 24 H 0.088 0.912 25 H 0.058 0.942 26 H 0.048 0.952 27 H 0.072 0.928 28 H 0.159 0.841 29 H 0.149 0.851 30 H 0.059 0.941 31 H 0.100 0.900 32 H 0.160 0.840 33 H 0.154 0.846 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.521 7.051 -13.929 16.254 hybrid contribution 0.681 0.023 0.231 0.719 sum -3.840 7.074 -13.699 15.888 Atomic orbital electron populations 1.22412 0.96813 1.02769 1.01483 1.22951 0.91931 0.97182 0.85050 0.91924 1.19269 0.96640 0.96544 0.88607 1.21066 0.91612 1.34783 1.08068 0.92704 1.24965 0.98515 0.95123 0.95596 1.69934 1.35733 1.35784 1.12069 0.86638 0.85589 0.78267 0.77457 1.20246 1.21212 1.20118 1.86310 1.79452 1.37565 1.16037 1.20374 0.93666 0.91033 0.89231 1.21829 1.04260 0.94481 0.99704 1.21677 0.98547 1.00243 0.92451 1.20778 0.99997 0.90952 0.95859 1.20428 0.91832 0.95894 0.92585 1.58709 1.03775 1.31700 1.43496 1.67386 1.15007 1.06865 1.26412 1.22094 1.00362 1.00760 0.86532 0.93429 0.91747 0.91181 0.94247 0.95171 0.92822 0.84117 0.85115 0.94087 0.89980 0.84045 0.84642 0.82083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.90 9.20 37.16 0.34 -2.56 16 2 C 0.08 1.71 2.17 -26.73 -0.06 1.65 16 3 H 0.06 1.23 6.33 -51.93 -0.33 0.90 16 4 C 0.03 0.66 4.68 -27.89 -0.13 0.53 16 5 C -0.52 -14.50 8.88 -34.44 -0.31 -14.80 16 6 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 9 Si 0.89 21.85 29.54 -169.99 -5.02 16.82 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 13 O -0.28 -5.88 9.56 -19.46 -0.19 -6.06 16 14 C 0.11 1.94 6.62 -39.07 -0.26 1.68 16 15 C -0.18 -2.80 8.36 -39.14 -0.33 -3.12 16 16 C -0.11 -1.53 9.71 -39.47 -0.38 -1.91 16 17 C 0.06 0.89 6.29 -82.58 -0.52 0.37 16 18 C 0.12 1.35 7.09 -4.98 -0.04 1.32 16 19 N -0.85 -8.81 9.61 -11.41 -0.11 -8.92 16 20 N -0.45 -7.19 10.27 -9.35 -0.10 -7.29 16 21 C 0.06 1.06 11.14 -17.38 -0.19 0.86 16 22 H 0.05 0.68 6.98 -51.93 -0.36 0.32 16 23 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 28 H 0.14 2.07 5.61 -52.48 -0.29 1.77 16 29 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 30 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.75 8.04 -51.92 -0.42 0.33 16 32 H 0.35 3.81 8.99 -39.29 -0.35 3.45 16 33 H 0.34 2.59 9.08 -39.29 -0.36 2.24 16 34 H 0.16 2.55 8.06 -52.49 -0.42 2.12 16 LS Contribution 291.08 15.07 4.39 4.39 Total: -1.00 -30.83 291.08 -6.87 -37.70 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -4.61 Total: 3.54 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: -1.97 Total: -14.40 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: 0.53 Total: -41.99 kcal Atomic # 8 Polarization: -5.88 SS G_CDS: -0.19 Total: -6.06 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.83 -6.87 -37.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695786421.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.241 kcal (2) G-P(sol) polarization free energy of solvation -30.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds