Wall clock time and date at job start Mon Mar 30 2020 20:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46903 * 110.99974 * 2 1 4 4 C 1.50694 * 109.47066 * 66.04837 * 3 2 1 5 5 H 1.08000 * 120.00563 * 359.97438 * 4 3 2 6 6 C 1.37885 * 119.99902 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.47068 * 110.99854 * 236.04672 * 2 1 3 13 13 H 1.09943 * 110.39113 * 64.65415 * 12 2 1 14 14 C 1.58862 * 112.91413 * 298.92871 * 12 2 1 15 15 H 1.09380 * 116.81760 * 63.45615 * 14 12 2 16 16 C 1.56672 * 107.11540 * 195.74966 * 14 12 2 17 17 C 1.57212 * 108.77159 * 68.06542 * 16 14 12 18 18 H 1.09719 * 115.47958 * 125.99546 * 17 16 14 19 19 C 1.57673 * 107.14696 * 256.08821 * 17 16 14 20 20 N 1.52215 * 106.86082 * 95.55737 * 19 17 16 21 21 C 1.43033 * 91.58257 * 326.96913 * 20 19 17 22 22 H 1.08719 * 80.34477 * 329.81206 * 21 20 19 23 23 C 1.58725 * 101.26689 * 65.93509 * 21 20 19 24 24 H 1.09459 * 119.87109 * 52.81814 * 23 21 20 25 25 C 1.56213 * 102.14990 * 187.24100 * 23 21 20 26 26 H 1.09000 * 109.47009 * 60.00040 * 1 2 3 27 27 H 1.08999 * 109.47192 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46724 * 300.00378 * 1 2 3 29 29 H 1.09007 * 109.47052 * 306.04522 * 3 2 1 30 30 H 1.09003 * 109.46808 * 186.05214 * 3 2 1 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.08672 * 110.01685 * 306.96262 * 16 14 12 33 33 H 1.09226 * 109.10063 * 187.19037 * 16 14 12 34 34 H 1.08497 * 111.48393 * 334.46979 * 19 17 16 35 35 H 1.09428 * 109.57721 * 213.20758 * 19 17 16 36 36 H 1.00903 * 110.23559 * 214.91739 * 20 19 17 37 37 H 1.09385 * 111.65517 * 150.59917 * 25 23 21 38 38 H 1.08726 * 112.58921 * 275.95995 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6370 2.0471 1.2984 5 1 1.0740 1.5115 2.0485 6 6 2.0269 3.3495 1.5285 7 7 2.7120 4.0019 0.6149 8 14 1.5819 4.1872 3.1377 9 1 0.2695 4.8673 2.9954 10 1 1.4986 3.1717 4.2180 11 1 2.6240 5.1887 3.4790 12 6 1.9960 -0.7669 -1.1389 13 1 1.7215 -0.2824 -2.0869 14 6 1.5569 -2.2933 -1.1130 15 1 0.4862 -2.5003 -1.1983 16 6 2.4906 -3.0587 -2.1115 17 6 3.9512 -3.0710 -1.5301 18 1 4.4152 -4.0612 -1.4403 19 6 4.7834 -2.0056 -2.3415 20 7 4.7576 -0.7162 -1.5328 21 6 3.4423 -1.0002 -1.0478 22 1 3.3905 -1.4938 -2.0150 23 6 3.7102 -2.2895 -0.1617 24 1 4.4863 -2.2691 0.6099 25 6 2.2620 -2.7301 0.2241 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.5611 1.9274 -0.8310 30 1 3.0798 1.3444 -0.1084 31 1 2.9859 4.9183 0.7766 32 1 2.4729 -2.5734 -3.0837 33 1 2.1356 -4.0864 -2.2165 34 1 4.3678 -1.8463 -3.3309 35 1 5.8205 -2.3425 -2.4327 36 1 4.7337 0.0821 -2.1495 37 1 2.1954 -3.8116 0.3737 38 1 1.8800 -2.1964 1.0909 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328546607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:57:06 Heat of formation + Delta-G solvation = 179.019054 kcal Electronic energy + Delta-G solvation = -17897.581455 eV Core-core repulsion = 15360.579098 eV Total energy + Delta-G solvation = -2537.002358 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 236.158 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.84229 -36.24841 -34.18049 -32.33997 -29.55610 -28.05768 -27.12750 -26.47599 -24.34510 -23.84331 -21.10066 -19.77581 -19.32108 -18.23823 -16.40128 -15.81855 -15.57439 -14.97419 -14.66858 -14.22460 -13.78699 -13.21207 -12.95925 -12.51584 -12.00151 -11.88769 -11.63747 -11.29055 -11.09682 -10.90433 -10.86098 -10.77317 -10.50414 -10.40529 -10.33071 -10.20922 -10.12666 -9.72479 -9.18813 -8.94621 -8.35549 -7.75486 -7.13487 -5.94986 -3.95277 3.36294 3.42463 3.47128 3.62004 4.32693 4.50894 4.60050 4.72953 4.89105 4.99250 5.21123 5.33370 5.36575 5.38325 5.42267 5.46904 5.66770 5.76453 5.83868 5.88296 5.98377 6.10180 6.17367 6.21899 6.33872 6.38073 6.43075 6.57078 6.73949 6.80022 6.95096 7.39443 7.41025 7.69118 7.87904 8.20113 8.29855 8.63086 9.11914 9.67983 11.16066 Molecular weight = 236.16amu Principal moments of inertia in cm(-1) A = 0.035875 B = 0.007268 C = 0.006672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.310355 B = 3851.807307 C = 4195.702246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.525 5.525 3 C 0.197 3.803 4 C -0.502 4.502 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.283 1.283 10 H -0.273 1.273 11 H -0.287 1.287 12 C 0.148 3.852 13 H 0.029 0.971 14 C -0.103 4.103 15 H 0.104 0.896 16 C -0.117 4.117 17 C -0.111 4.111 18 H 0.093 0.907 19 C 0.006 3.994 20 N -0.570 5.570 21 C -0.040 4.040 22 H 0.029 0.971 23 C -0.065 4.065 24 H 0.115 0.885 25 C -0.108 4.108 26 H 0.008 0.992 27 H 0.045 0.955 28 H 0.073 0.927 29 H -0.016 1.016 30 H 0.037 0.963 31 H 0.260 0.740 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.324 0.676 37 H 0.055 0.945 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.320 -13.957 -5.872 15.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.249 5.249 3 C 0.073 3.927 4 C -0.541 4.541 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.198 1.198 11 H -0.213 1.213 12 C 0.037 3.963 13 H 0.047 0.953 14 C -0.122 4.122 15 H 0.122 0.878 16 C -0.154 4.154 17 C -0.129 4.129 18 H 0.111 0.889 19 C -0.123 4.123 20 N -0.194 5.194 21 C -0.150 4.150 22 H 0.047 0.953 23 C -0.084 4.084 24 H 0.133 0.867 25 C -0.146 4.146 26 H 0.027 0.973 27 H 0.064 0.936 28 H 0.091 0.909 29 H 0.002 0.998 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.089 0.911 36 H 0.138 0.862 37 H 0.073 0.927 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.502 -14.153 -4.908 14.989 hybrid contribution -1.025 1.227 -1.110 1.946 sum -0.523 -12.926 -6.018 14.268 Atomic orbital electron populations 1.22215 0.89361 0.99090 1.00701 1.62282 1.06284 1.17685 1.38687 1.19692 0.95910 0.80935 0.96203 1.21142 1.34486 0.96774 1.01707 0.91939 1.24978 0.95391 0.97408 0.96884 1.69965 1.38504 1.11303 1.34092 0.86522 0.77856 0.79234 0.83938 1.20894 1.19780 1.21315 1.21717 0.88646 0.93091 0.92830 0.95337 1.24492 0.97813 0.93176 0.96718 0.87841 1.23239 0.94430 0.99781 0.97983 1.25359 0.93778 0.97236 0.96577 0.88887 1.24757 0.99974 0.92681 0.94894 1.66784 1.23209 1.02628 1.26817 1.22830 0.90336 1.01939 0.99931 0.95290 1.24702 0.96549 0.93519 0.93648 0.86736 1.23235 0.94581 0.98906 0.97846 0.97345 0.93628 0.90862 0.99843 0.94492 0.93071 0.92605 0.91997 0.93145 0.91103 0.86245 0.92676 0.89111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 9.22 60.07 0.55 1.23 16 2 N -0.52 -11.38 3.78 -235.74 -0.89 -12.27 16 3 C 0.20 5.26 4.63 -4.98 -0.02 5.24 16 4 C -0.50 -14.38 8.52 -34.44 -0.29 -14.67 16 5 H 0.06 1.76 7.10 -52.49 -0.37 1.39 16 6 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 7 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 8 Si 0.90 22.07 29.54 -169.99 -5.02 17.04 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 C 0.15 2.72 2.19 -67.34 -0.15 2.57 16 13 H 0.03 0.55 8.22 -51.39 -0.42 0.13 16 14 C -0.10 -1.47 4.42 -83.02 -0.37 -1.84 16 15 H 0.10 1.35 7.40 -51.71 -0.38 0.96 16 16 C -0.12 -1.44 5.35 -22.46 -0.12 -1.56 16 17 C -0.11 -1.42 4.95 -82.19 -0.41 -1.83 16 18 H 0.09 1.02 8.20 -51.52 -0.42 0.60 16 19 C 0.01 0.09 6.56 1.76 0.01 0.10 16 20 N -0.57 -9.80 8.20 -152.07 -1.25 -11.05 16 21 C -0.04 -0.71 4.44 -69.56 -0.31 -1.02 16 22 H 0.03 0.46 1.19 -159.03 -0.19 0.27 16 23 C -0.07 -1.03 5.78 -82.13 -0.47 -1.51 16 24 H 0.11 1.89 8.18 -51.67 -0.42 1.47 16 25 C -0.11 -1.60 6.22 -22.65 -0.14 -1.74 16 26 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 27 H 0.04 0.73 6.71 -51.93 -0.35 0.39 16 28 H 0.07 1.52 6.86 -51.93 -0.36 1.16 16 29 H -0.02 -0.46 8.12 -51.92 -0.42 -0.89 16 30 H 0.04 1.07 7.20 -51.93 -0.37 0.70 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.06 0.69 6.92 -52.11 -0.36 0.32 16 33 H 0.06 0.65 8.16 -51.80 -0.42 0.23 16 34 H 0.05 0.63 7.14 -52.21 -0.37 0.25 16 35 H 0.07 0.87 8.18 -51.69 -0.42 0.45 16 36 H 0.32 5.47 8.85 -39.29 -0.35 5.12 16 37 H 0.05 0.70 8.17 -51.71 -0.42 0.27 16 38 H 0.09 1.55 7.50 -52.08 -0.39 1.16 16 LS Contribution 284.41 15.07 4.29 4.29 Total: -1.00 -30.53 284.41 -9.96 -40.49 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -6.01 Total: 1.58 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -1.81 Total: -13.56 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: -1.40 Total: -49.84 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.53 -9.96 -40.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328546607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.513 kcal (2) G-P(sol) polarization free energy of solvation -30.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 188.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 179.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds