Wall clock time and date at job start Mon Mar 30 2020 20:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46493 * 109.47400 * 180.02562 * 10 9 7 12 12 C 1.34770 * 120.00393 * 179.97438 * 11 10 9 13 13 O 1.21283 * 120.00061 * 0.02562 * 12 11 10 14 14 C 1.50697 * 120.00482 * 179.97438 * 12 11 10 15 15 C 1.52309 * 115.91527 * 111.71372 * 14 12 11 16 16 C 1.52069 * 115.93417 * 180.02562 * 14 12 11 17 17 H 1.08995 * 117.25113 * 359.53868 * 16 14 12 18 18 C 1.52716 * 120.52310 * 149.26406 * 16 14 12 19 19 C 1.52876 * 110.15020 * 338.52489 * 18 16 14 20 20 C 1.53309 * 108.57875 * 54.52872 * 19 18 16 21 21 C 1.52072 * 114.63842 * 326.62475 * 14 12 11 22 22 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 24 24 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 25 25 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 26 26 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 27 27 H 0.97000 * 120.00040 * 359.97438 * 11 10 9 28 28 H 1.08998 * 117.53869 * 213.90774 * 15 14 12 29 29 H 1.09003 * 117.53648 * 359.14969 * 15 14 12 30 30 H 1.08995 * 109.35535 * 98.74111 * 18 16 14 31 31 H 1.09001 * 109.35585 * 218.45861 * 18 16 14 32 32 H 1.09007 * 109.61335 * 174.24885 * 19 18 16 33 33 H 1.08991 * 109.62520 * 294.79475 * 19 18 16 34 34 H 1.09000 * 109.61712 * 45.28586 * 20 19 18 35 35 H 1.08997 * 109.61479 * 165.64244 * 20 19 18 36 36 H 1.09000 * 109.26966 * 314.63702 * 21 14 12 37 37 H 1.09000 * 109.26939 * 74.10091 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 6 4.0215 -2.6366 0.0108 11 7 5.4865 -2.6366 0.0175 12 6 6.1603 -3.8037 0.0233 13 8 5.5539 -4.8541 0.0224 14 6 7.6673 -3.8038 0.0296 15 6 8.3275 -4.3075 1.3064 16 6 8.3322 -5.1714 0.0353 17 1 7.6791 -6.0439 0.0421 18 6 9.6911 -5.3759 -0.6309 19 6 9.9429 -4.2759 -1.6623 20 6 9.7845 -2.9153 -0.9738 21 6 8.3045 -2.6515 -0.7310 22 1 -0.4849 0.8400 0.0004 23 1 3.8786 -0.6821 -0.8838 24 1 3.8711 -0.6785 0.8962 25 1 3.6545 -3.1486 0.9003 26 1 3.6618 -3.1522 -0.8796 27 1 5.9715 -1.7966 0.0178 28 1 9.2680 -3.8439 1.6041 29 1 7.6750 -4.6160 2.1233 30 1 10.4734 -5.3461 0.1275 31 1 9.7072 -6.3455 -1.1287 32 1 10.9540 -4.3701 -2.0584 33 1 9.2198 -4.3620 -2.4733 34 1 10.3058 -2.9266 -0.0166 35 1 10.2017 -2.1333 -1.6083 36 1 7.8014 -2.5319 -1.6905 37 1 8.1959 -1.7344 -0.1519 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693249607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:57:54 Heat of formation + Delta-G solvation = -41.416393 kcal Electronic energy + Delta-G solvation = -16787.303134 eV Core-core repulsion = 14143.023316 eV Total energy + Delta-G solvation = -2644.279818 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.61892 -38.06960 -35.03556 -33.18212 -32.84233 -31.25878 -29.91463 -25.66813 -24.69089 -23.24428 -21.53446 -20.80057 -20.37524 -18.36796 -17.34889 -16.89059 -15.35635 -15.16542 -14.70382 -14.37616 -14.19391 -14.11798 -13.81716 -13.55077 -13.11136 -12.68196 -12.48436 -12.17946 -12.03082 -11.48959 -11.23159 -11.15055 -11.03453 -10.68356 -10.40274 -10.27125 -10.06055 -9.95619 -9.79912 -9.42408 -9.24218 -8.64144 -8.51360 -6.11312 -4.11407 2.77385 3.24899 3.32505 3.33818 3.52506 3.76363 4.37461 4.44845 4.50731 4.62561 4.79836 4.89262 5.05585 5.12244 5.21613 5.29638 5.36546 5.45683 5.61839 5.66248 5.72213 5.90900 5.93695 5.95320 6.03628 6.12435 6.14880 6.20713 6.25568 6.55938 6.77654 7.13985 7.23077 7.66503 7.93338 8.43559 8.59847 8.93074 9.48813 11.01800 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.041616 B = 0.004952 C = 0.004613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.661088 B = 5653.025966 C = 6068.828690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.523 4.523 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.129 3.871 11 N -0.721 5.721 12 C 0.538 3.462 13 O -0.547 6.547 14 C -0.142 4.142 15 C -0.158 4.158 16 C -0.116 4.116 17 H 0.116 0.884 18 C -0.088 4.088 19 C -0.121 4.121 20 C -0.119 4.119 21 C -0.085 4.085 22 H 0.265 0.735 23 H 0.017 0.983 24 H 0.022 0.978 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.396 0.604 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.262 -5.068 -0.767 22.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.561 4.561 8 H 0.094 0.906 9 C -0.059 4.059 10 C 0.007 3.993 11 N -0.371 5.371 12 C 0.323 3.677 13 O -0.426 6.426 14 C -0.146 4.146 15 C -0.195 4.195 16 C -0.134 4.134 17 H 0.134 0.866 18 C -0.126 4.126 19 C -0.159 4.159 20 C -0.156 4.156 21 C -0.122 4.122 22 H 0.075 0.925 23 H 0.036 0.964 24 H 0.040 0.960 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.230 0.770 28 H 0.120 0.880 29 H 0.115 0.885 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 21.613 -5.693 -0.759 22.364 hybrid contribution 0.382 1.424 0.039 1.475 sum 21.995 -4.269 -0.720 22.417 Atomic orbital electron populations 1.69905 1.06293 1.27050 1.50436 1.24999 0.94760 0.99136 0.94356 0.86753 0.80269 0.83545 0.78518 1.20198 1.21246 1.19094 1.20925 0.88652 0.94902 1.51653 0.90635 1.19791 0.98003 0.91340 0.96813 1.21517 0.76059 1.00130 1.01582 1.46264 1.08995 1.07857 1.73954 1.19594 0.87819 0.84072 0.76182 1.90668 1.69827 1.31552 1.50518 1.21098 0.92040 0.97870 1.03548 1.23203 1.02055 1.03328 0.90931 1.22260 0.98039 0.93683 0.99449 0.86637 1.21080 0.94408 0.99046 0.98018 1.21585 1.01458 0.94600 0.98237 1.21478 0.95808 0.97480 1.00859 1.20736 0.95710 0.95747 1.00034 0.92546 0.96438 0.96014 0.92002 0.91970 0.77035 0.88001 0.88476 0.91451 0.91364 0.91814 0.91490 0.91794 0.91394 0.90904 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 2 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.11 27.47 -169.99 -4.67 16.45 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.03 6.54 56.52 0.37 -5.66 16 7 C -0.52 -14.78 9.66 -34.44 -0.33 -15.12 16 8 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 9 C -0.02 -0.50 4.15 -27.88 -0.12 -0.62 16 10 C 0.13 2.71 5.61 -4.05 -0.02 2.69 16 11 N -0.72 -12.37 5.45 -60.30 -0.33 -12.70 16 12 C 0.54 9.21 7.28 -10.99 -0.08 9.13 16 13 O -0.55 -11.47 16.07 5.55 0.09 -11.38 16 14 C -0.14 -1.80 2.49 -156.96 -0.39 -2.19 16 15 C -0.16 -1.74 9.27 -26.72 -0.25 -1.99 16 16 C -0.12 -1.34 5.66 -90.88 -0.51 -1.86 16 17 H 0.12 1.56 7.50 -51.93 -0.39 1.17 16 18 C -0.09 -0.77 5.83 -26.94 -0.16 -0.93 16 19 C -0.12 -1.01 5.93 -26.63 -0.16 -1.17 16 20 C -0.12 -0.98 5.67 -26.94 -0.15 -1.13 16 21 C -0.08 -0.87 4.68 -27.57 -0.13 -1.00 16 22 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 23 H 0.02 0.39 7.58 -51.93 -0.39 0.00 16 24 H 0.02 0.49 7.19 -51.93 -0.37 0.12 16 25 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 26 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 27 H 0.40 5.75 7.45 -40.82 -0.30 5.45 16 28 H 0.10 0.91 7.26 -51.93 -0.38 0.53 16 29 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.07 0.51 8.06 -51.93 -0.42 0.09 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.62 8.06 -51.93 -0.42 0.21 16 34 H 0.06 0.49 7.11 -51.93 -0.37 0.12 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.67 7.81 -51.93 -0.41 0.26 16 LS Contribution 296.70 15.07 4.47 4.47 Total: -1.00 -31.98 296.70 -8.06 -40.04 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -5.99 Total: 2.10 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -2.40 Total: -12.28 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.45 Total: -39.40 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.45 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.98 -8.06 -40.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693249607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.378 kcal (2) G-P(sol) polarization free energy of solvation -31.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds