Wall clock time and date at job start Mon Mar 30 2020 20:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47641 * 2 1 4 4 C 1.50705 * 109.47041 * 119.99977 * 2 1 3 5 5 N 1.30495 * 125.64804 * 300.03909 * 4 2 1 6 6 C 1.34130 * 109.25477 * 179.97438 * 5 4 2 7 7 C 1.50701 * 125.98748 * 180.02562 * 6 5 4 8 8 H 1.09001 * 109.47335 * 334.98005 * 7 6 5 9 9 C 1.50701 * 109.47133 * 214.97772 * 7 6 5 10 10 H 1.08003 * 119.99998 * 265.99326 * 9 7 6 11 11 C 1.37874 * 119.99735 * 85.99515 * 9 7 6 12 12 N 1.31513 * 120.00256 * 5.31923 * 11 9 7 13 13 Si 1.86806 * 119.99841 * 185.32239 * 11 9 7 14 14 H 1.48507 * 109.46922 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47556 * 119.99636 * 13 11 9 16 16 H 1.48497 * 109.46932 * 239.99790 * 13 11 9 17 17 C 1.53002 * 109.46967 * 94.97920 * 7 6 5 18 18 N 1.46904 * 109.47183 * 185.41575 * 17 7 6 19 19 C 1.34664 * 108.02007 * 359.97438 * 6 5 4 20 20 N 1.35038 * 125.64994 * 119.99204 * 4 2 1 21 21 C 1.46505 * 126.40038 * 359.78370 * 20 4 2 22 22 H 1.09007 * 109.46563 * 300.00516 * 1 2 3 23 23 H 1.09008 * 109.46912 * 59.99665 * 1 2 3 24 24 H 1.08995 * 109.47876 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47183 * 239.99437 * 2 1 3 26 26 H 1.08999 * 109.47292 * 59.99504 * 3 2 1 27 27 H 1.08995 * 109.47545 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.46552 * 300.00025 * 3 2 1 29 29 H 0.97006 * 120.00090 * 180.02562 * 12 11 9 30 30 H 1.08999 * 109.47180 * 305.41886 * 17 7 6 31 31 H 1.09003 * 109.47132 * 65.41670 * 17 7 6 32 32 H 1.00894 * 110.99654 * 174.07576 * 18 17 7 33 33 H 1.00900 * 111.00116 * 298.03167 * 18 17 7 34 34 H 1.08001 * 126.58632 * 180.02562 * 19 6 5 35 35 H 1.08997 * 109.47447 * 89.98917 * 21 20 4 36 36 H 1.08999 * 109.46737 * 209.99934 * 21 20 4 37 37 H 1.09002 * 109.46189 * 329.99003 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7854 -0.3624 2.4637 6 6 2.3925 -1.2216 3.2958 7 6 2.3556 -1.1718 4.8015 8 1 2.1640 -0.1492 5.1267 9 6 3.6801 -1.6342 5.3520 10 1 3.8173 -2.6684 5.6314 11 6 4.7165 -0.7369 5.4990 12 7 4.5192 0.5409 5.2585 13 14 6.4011 -1.3363 6.0398 14 1 6.3609 -2.8065 6.2453 15 1 7.4024 -1.0096 4.9930 16 1 6.7790 -0.6693 7.3116 17 6 1.2423 -2.0872 5.3149 18 7 1.1205 -1.9406 6.7715 19 6 3.0398 -2.1370 2.5499 20 7 2.8118 -1.8131 1.2396 21 6 3.3146 -2.5321 0.0663 22 1 -0.3633 0.5140 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3635 -1.0276 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.6768 1.9564 0.8899 27 1 3.1301 1.4424 -0.0005 28 1 1.6768 1.9562 -0.8900 29 1 5.2486 1.1721 5.3616 30 1 0.2994 -1.8130 4.8420 31 1 1.4826 -3.1225 5.0728 32 1 0.3303 -2.4607 7.1224 33 1 1.9719 -2.2197 7.2356 34 1 3.6260 -2.9672 2.9153 35 1 4.2783 -2.1171 -0.2288 36 1 3.4328 -3.5878 0.3103 37 1 2.6064 -2.4262 -0.7555 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259528362.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:57:31 Heat of formation + Delta-G solvation = 43.953616 kcal Electronic energy + Delta-G solvation = -17356.368757 eV Core-core repulsion = 14748.083611 eV Total energy + Delta-G solvation = -2608.285146 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.16748 -35.48754 -34.62111 -33.03705 -32.13001 -29.23665 -27.18943 -26.87307 -25.77929 -24.16418 -22.04688 -20.93046 -19.01793 -18.47333 -16.40077 -15.89657 -15.06675 -14.72954 -14.42071 -14.24088 -13.91951 -13.57913 -13.00874 -12.84794 -12.61738 -12.42989 -12.10199 -11.79784 -11.52172 -11.26802 -11.07786 -10.93805 -10.87159 -10.62450 -10.56476 -10.45878 -9.41179 -9.09886 -8.79265 -8.49223 -8.31592 -7.61114 -7.04861 -5.90505 -3.96113 2.99022 3.31986 3.40540 3.41924 3.54680 4.30574 4.49062 4.88880 5.04181 5.10749 5.34176 5.36329 5.47661 5.55007 5.66319 5.76994 5.86312 5.90475 6.08434 6.13621 6.16352 6.46790 6.51331 6.54142 6.60501 6.86171 6.98635 7.10050 7.36722 7.83270 7.89641 8.09586 8.17913 8.34969 8.43492 8.56160 9.15331 9.29669 9.67907 11.17858 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.022303 B = 0.008312 C = 0.007389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.118369 B = 3367.931546 C = 3788.453699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.000 4.000 3 C -0.137 4.137 4 C 0.178 3.822 5 N -0.481 5.481 6 C 0.068 3.932 7 C 0.112 3.888 8 H 0.073 0.927 9 C -0.511 4.511 10 H 0.051 0.949 11 C 0.073 3.927 12 N -0.872 5.872 13 Si 0.882 3.118 14 H -0.274 1.274 15 H -0.287 1.287 16 H -0.284 1.284 17 C 0.085 3.915 18 N -0.842 5.842 19 C -0.066 4.066 20 N -0.473 5.473 21 C 0.079 3.921 22 H 0.069 0.931 23 H 0.054 0.946 24 H 0.049 0.951 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.258 0.742 30 H 0.042 0.958 31 H 0.004 0.996 32 H 0.316 0.684 33 H 0.346 0.654 34 H 0.163 0.837 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.184 -4.829 -10.948 12.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.020 4.020 3 C -0.195 4.195 4 C -0.082 4.082 5 N -0.201 5.201 6 C -0.062 4.062 7 C 0.092 3.908 8 H 0.091 0.909 9 C -0.550 4.550 10 H 0.069 0.931 11 C -0.131 4.131 12 N -0.508 5.508 13 Si 0.710 3.290 14 H -0.199 1.199 15 H -0.214 1.214 16 H -0.210 1.210 17 C -0.046 4.046 18 N -0.371 5.371 19 C -0.195 4.195 20 N -0.159 5.159 21 C -0.065 4.065 22 H 0.088 0.912 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.022 0.978 32 H 0.126 0.874 33 H 0.160 0.840 34 H 0.181 0.819 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.593 -3.286 -10.966 12.335 hybrid contribution 2.023 -2.139 -0.097 2.946 sum -2.570 -5.425 -11.063 12.587 Atomic orbital electron populations 1.21752 0.93825 1.01631 1.02237 1.19357 0.96042 0.95507 0.91136 1.21746 1.00939 0.94672 1.02166 1.22939 0.99456 0.90148 0.95675 1.70108 1.24319 1.27280 0.98363 1.21705 0.96013 0.90811 0.97629 1.17229 0.92433 0.98209 0.82903 0.90896 1.20902 0.96437 0.94799 1.42856 0.93110 1.24958 0.98446 0.94786 0.94882 1.70007 1.31494 1.01353 1.47970 0.86721 0.85213 0.78866 0.78215 1.19892 1.21358 1.21020 1.21716 0.98603 0.96730 0.87545 1.58606 1.08291 1.64501 1.05663 1.22346 1.09746 1.06172 0.81189 1.45095 1.40563 1.23659 1.06604 1.21797 0.99776 0.97336 0.87551 0.91209 0.92672 0.93185 0.91265 0.91099 0.92994 0.92753 0.93208 0.93918 0.97815 0.87408 0.83982 0.81919 0.91635 0.90428 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 9.18 37.16 0.34 -1.49 16 2 C 0.00 0.00 3.25 -91.77 -0.30 -0.30 16 3 C -0.14 -2.03 9.18 37.16 0.34 -1.69 16 4 C 0.18 3.55 6.41 -155.42 -1.00 2.55 16 5 N -0.48 -11.59 11.25 -7.07 -0.08 -11.67 16 6 C 0.07 1.69 6.02 -82.85 -0.50 1.19 16 7 C 0.11 2.94 2.45 -92.92 -0.23 2.72 16 8 H 0.07 2.24 7.50 -51.93 -0.39 1.85 16 9 C -0.51 -13.83 6.77 -34.44 -0.23 -14.06 16 10 H 0.05 1.34 7.82 -52.48 -0.41 0.93 16 11 C 0.07 2.05 5.45 -17.82 -0.10 1.95 16 12 N -0.87 -26.19 12.91 55.43 0.72 -25.48 16 13 Si 0.88 21.36 29.54 -169.99 -5.02 16.34 16 14 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 15 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 17 C 0.09 1.92 6.19 -3.82 -0.02 1.90 16 18 N -0.84 -17.41 9.57 -10.36 -0.10 -17.51 16 19 C -0.07 -1.46 10.76 -16.56 -0.18 -1.64 16 20 N -0.47 -8.91 3.15 -121.28 -0.38 -9.29 16 21 C 0.08 1.01 10.83 59.85 0.65 1.66 16 22 H 0.07 1.07 8.14 -51.92 -0.42 0.65 16 23 H 0.05 0.59 8.14 -51.92 -0.42 0.16 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.07 0.86 6.73 -51.93 -0.35 0.51 16 26 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 32 H 0.32 5.38 9.08 -39.29 -0.36 5.03 16 33 H 0.35 7.24 8.25 -39.29 -0.32 6.92 16 34 H 0.16 3.44 7.95 -52.49 -0.42 3.03 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.08 0.78 7.05 -51.93 -0.37 0.41 16 LS Contribution 308.33 15.07 4.65 4.65 Total: -1.00 -32.75 308.33 -7.42 -40.17 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -5.98 Total: 9.99 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -1.22 Total: -7.21 kcal Atomic # 7 Polarization: -64.10 SS G_CDS: 0.15 Total: -63.94 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.75 -7.42 -40.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259528362.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.124 kcal (2) G-P(sol) polarization free energy of solvation -32.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds