Wall clock time and date at job start Mon Mar 30 2020 20:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47641 * 2 1 4 4 C 1.50705 * 109.47041 * 119.99977 * 2 1 3 5 5 N 1.30495 * 125.64804 * 300.03909 * 4 2 1 6 6 C 1.34130 * 109.25477 * 179.97438 * 5 4 2 7 7 C 1.50701 * 125.98748 * 180.02562 * 6 5 4 8 8 H 1.09001 * 109.47335 * 334.98005 * 7 6 5 9 9 C 1.50701 * 109.47133 * 214.97772 * 7 6 5 10 10 H 1.08003 * 119.99998 * 265.99326 * 9 7 6 11 11 C 1.37874 * 119.99735 * 85.99515 * 9 7 6 12 12 N 1.31513 * 120.00256 * 5.31923 * 11 9 7 13 13 Si 1.86806 * 119.99841 * 185.32239 * 11 9 7 14 14 H 1.48507 * 109.46922 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47556 * 119.99636 * 13 11 9 16 16 H 1.48497 * 109.46932 * 239.99790 * 13 11 9 17 17 C 1.53002 * 109.46967 * 94.97920 * 7 6 5 18 18 N 1.46904 * 109.47183 * 185.41575 * 17 7 6 19 19 C 1.34664 * 108.02007 * 359.97438 * 6 5 4 20 20 N 1.35038 * 125.64994 * 119.99204 * 4 2 1 21 21 C 1.46505 * 126.40038 * 359.78370 * 20 4 2 22 22 H 1.09007 * 109.46563 * 300.00516 * 1 2 3 23 23 H 1.09008 * 109.46912 * 59.99665 * 1 2 3 24 24 H 1.08995 * 109.47876 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47183 * 239.99437 * 2 1 3 26 26 H 1.08999 * 109.47292 * 59.99504 * 3 2 1 27 27 H 1.08995 * 109.47545 * 180.02562 * 3 2 1 28 28 H 1.09003 * 109.46552 * 300.00025 * 3 2 1 29 29 H 0.97006 * 120.00090 * 180.02562 * 12 11 9 30 30 H 1.08999 * 109.47180 * 305.41886 * 17 7 6 31 31 H 1.09003 * 109.47132 * 65.41670 * 17 7 6 32 32 H 1.00894 * 110.99654 * 174.07576 * 18 17 7 33 33 H 1.00900 * 111.00116 * 298.03167 * 18 17 7 34 34 H 1.08001 * 126.58632 * 180.02562 * 19 6 5 35 35 H 1.08997 * 109.47447 * 89.98917 * 21 20 4 36 36 H 1.08999 * 109.46737 * 209.99934 * 21 20 4 37 37 H 1.09002 * 109.46189 * 329.99003 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7854 -0.3624 2.4637 6 6 2.3925 -1.2216 3.2958 7 6 2.3556 -1.1718 4.8015 8 1 2.1640 -0.1492 5.1267 9 6 3.6801 -1.6342 5.3520 10 1 3.8173 -2.6684 5.6314 11 6 4.7165 -0.7369 5.4990 12 7 4.5192 0.5409 5.2585 13 14 6.4011 -1.3363 6.0398 14 1 6.3609 -2.8065 6.2453 15 1 7.4024 -1.0096 4.9930 16 1 6.7790 -0.6693 7.3116 17 6 1.2423 -2.0872 5.3149 18 7 1.1205 -1.9406 6.7715 19 6 3.0398 -2.1370 2.5499 20 7 2.8118 -1.8131 1.2396 21 6 3.3146 -2.5321 0.0663 22 1 -0.3633 0.5140 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3635 -1.0276 0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.6768 1.9564 0.8899 27 1 3.1301 1.4424 -0.0005 28 1 1.6768 1.9562 -0.8900 29 1 5.2486 1.1721 5.3616 30 1 0.2994 -1.8130 4.8420 31 1 1.4826 -3.1225 5.0728 32 1 0.3303 -2.4607 7.1224 33 1 1.9719 -2.2197 7.2356 34 1 3.6260 -2.9672 2.9153 35 1 4.2783 -2.1171 -0.2288 36 1 3.4328 -3.5878 0.3103 37 1 2.6064 -2.4262 -0.7555 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259528362.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:57:30 Heat of formation + Delta-G solvation = 20.835647 kcal Electronic energy + Delta-G solvation = -17357.371227 eV Core-core repulsion = 14748.083611 eV Total energy + Delta-G solvation = -2609.287616 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 237.154 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.75035 -37.21557 -35.96923 -34.53300 -34.17244 -31.06633 -28.69095 -27.99194 -27.30810 -26.13373 -23.47119 -22.63299 -20.82560 -19.90059 -18.30775 -17.53046 -16.67974 -16.36145 -16.19126 -15.66288 -15.46258 -15.05207 -14.59428 -14.24364 -14.08595 -13.61013 -13.47497 -13.42448 -13.08929 -12.92467 -12.83669 -12.51652 -12.32148 -12.27192 -12.04929 -11.81309 -11.39619 -11.08279 -10.64240 -10.35639 -10.09002 -9.32921 -8.74782 -8.03366 -6.15057 1.39596 1.41170 1.43659 1.52825 2.18546 2.44764 2.58379 3.24861 3.62508 3.94519 4.03875 4.11768 4.26440 4.35346 4.41913 4.51279 4.62818 4.68092 4.70495 4.83988 4.88614 4.99768 5.04984 5.14288 5.20392 5.30764 5.39982 5.46497 5.67311 5.72681 5.92102 6.28135 6.34082 6.54132 6.72424 6.93249 7.04578 7.51665 7.63851 9.05728 Molecular weight = 237.15amu Principal moments of inertia in cm(-1) A = 0.022303 B = 0.008312 C = 0.007389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.118369 B = 3367.931546 C = 3788.453699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.001 4.001 3 C -0.133 4.133 4 C 0.186 3.814 5 N -0.533 5.533 6 C 0.028 3.972 7 C 0.115 3.885 8 H 0.014 0.986 9 C -0.504 4.504 10 H 0.059 0.941 11 C 0.017 3.983 12 N -0.918 5.918 13 Si 0.951 3.049 14 H -0.257 1.257 15 H -0.290 1.290 16 H -0.284 1.284 17 C 0.097 3.903 18 N -0.849 5.849 19 C -0.071 4.071 20 N -0.469 5.469 21 C 0.068 3.932 22 H 0.039 0.961 23 H 0.091 0.909 24 H 0.052 0.948 25 H 0.109 0.891 26 H 0.036 0.964 27 H 0.038 0.962 28 H 0.094 0.906 29 H 0.254 0.746 30 H 0.038 0.962 31 H 0.015 0.985 32 H 0.339 0.661 33 H 0.346 0.654 34 H 0.170 0.830 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.858 -6.598 -13.218 15.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.021 4.021 3 C -0.191 4.191 4 C -0.076 4.076 5 N -0.253 5.253 6 C -0.100 4.100 7 C 0.095 3.905 8 H 0.032 0.968 9 C -0.543 4.543 10 H 0.077 0.923 11 C -0.182 4.182 12 N -0.557 5.557 13 Si 0.777 3.223 14 H -0.181 1.181 15 H -0.216 1.216 16 H -0.211 1.211 17 C -0.034 4.034 18 N -0.379 5.379 19 C -0.201 4.201 20 N -0.154 5.154 21 C -0.073 4.073 22 H 0.058 0.942 23 H 0.110 0.890 24 H 0.071 0.929 25 H 0.127 0.873 26 H 0.055 0.945 27 H 0.058 0.942 28 H 0.113 0.887 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.033 0.967 32 H 0.151 0.849 33 H 0.159 0.841 34 H 0.187 0.813 35 H 0.095 0.905 36 H 0.114 0.886 37 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.277 -5.104 -13.246 14.825 hybrid contribution 1.835 -1.583 0.541 2.483 sum -2.442 -6.687 -12.705 14.563 Atomic orbital electron populations 1.21707 0.92571 1.01959 1.02591 1.19676 0.97034 0.95233 0.90192 1.21715 1.00092 0.94828 1.02491 1.23848 0.97905 0.89884 0.95989 1.70009 1.26337 1.28596 1.00365 1.21518 0.98437 0.92809 0.97283 1.17033 0.93366 0.95446 0.84646 0.96796 1.21149 0.96726 0.94851 1.41577 0.92320 1.25762 1.02359 0.94735 0.95358 1.70201 1.32391 1.02809 1.50284 0.85622 0.80199 0.79108 0.77354 1.18063 1.21645 1.21053 1.21495 0.97192 0.96375 0.88382 1.58503 1.09256 1.65412 1.04770 1.22315 1.09249 1.05803 0.82761 1.45356 1.39612 1.23413 1.07028 1.22250 1.01082 0.97866 0.86079 0.94157 0.88992 0.92876 0.87302 0.94457 0.94240 0.88707 0.93688 0.94328 0.96653 0.84861 0.84053 0.81263 0.90470 0.88553 0.87282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 9.18 71.98 0.66 -2.54 16 2 C 0.00 -0.03 3.25 -11.54 -0.04 -0.07 16 3 C -0.13 -3.74 9.18 71.98 0.66 -3.08 16 4 C 0.19 7.25 6.41 138.13 0.89 8.14 16 5 N -0.53 -26.51 11.25 -176.29 -1.98 -28.49 16 6 C 0.03 1.47 6.02 41.39 0.25 1.72 16 7 C 0.12 6.29 2.45 -12.28 -0.03 6.26 16 8 H 0.01 0.91 7.50 -2.39 -0.02 0.89 16 9 C -0.50 -27.75 6.77 25.60 0.17 -27.58 16 10 H 0.06 3.07 7.82 -2.91 -0.02 3.05 16 11 C 0.02 0.97 5.45 84.65 0.46 1.43 16 12 N -0.92 -57.50 12.91 21.45 0.28 -57.22 16 13 Si 0.95 44.43 29.54 68.60 2.03 46.46 16 14 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 15 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 16 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 17 C 0.10 4.45 6.19 86.30 0.53 4.99 16 18 N -0.85 -35.36 9.57 -186.70 -1.79 -37.15 16 19 C -0.07 -3.12 10.76 83.09 0.89 -2.23 16 20 N -0.47 -16.90 3.15 -537.61 -1.69 -18.59 16 21 C 0.07 1.49 10.83 127.77 1.38 2.87 16 22 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 23 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 24 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.11 2.16 6.73 -2.39 -0.02 2.14 16 26 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.25 15.23 8.31 -92.70 -0.77 14.46 16 30 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.34 11.33 9.08 -89.70 -0.81 10.52 16 33 H 0.35 14.50 8.25 -89.69 -0.74 13.76 16 34 H 0.17 7.06 7.95 -2.91 -0.02 7.04 16 35 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.11 1.67 7.05 -2.39 -0.02 1.65 16 Total: -1.00 -75.62 308.33 2.18 -73.44 By element: Atomic # 1 Polarization: 32.13 SS G_CDS: -0.49 Total: 31.64 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: 5.83 Total: -10.08 kcal Atomic # 7 Polarization: -136.27 SS G_CDS: -5.19 Total: -141.46 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -75.62 2.18 -73.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259528362.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.279 kcal (2) G-P(sol) polarization free energy of solvation -75.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds