Wall clock time and date at job start Mon Mar 30 2020 20:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.41373 * 126.80207 * 2 1 4 4 C 1.35451 * 103.98764 * 180.02562 * 3 2 1 5 5 C 1.50706 * 126.77584 * 179.97438 * 4 3 2 6 6 N 1.46497 * 109.47174 * 89.99560 * 5 4 3 7 7 C 1.34777 * 119.99525 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00463 * 0.02562 * 7 6 5 9 9 C 1.50700 * 119.99675 * 179.72583 * 7 6 5 10 10 H 1.08998 * 109.47585 * 60.27844 * 9 7 6 11 11 C 1.52998 * 109.47092 * 300.27576 * 9 7 6 12 12 C 1.50703 * 109.47148 * 180.28037 * 9 7 6 13 13 H 1.08001 * 120.00037 * 359.97438 * 12 9 7 14 14 C 1.37875 * 120.00214 * 179.97438 * 12 9 7 15 15 N 1.31520 * 119.99609 * 0.02562 * 14 12 9 16 16 Si 1.86799 * 120.00201 * 179.97438 * 14 12 9 17 17 H 1.48496 * 109.47001 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47188 * 120.00103 * 16 14 12 19 19 H 1.48497 * 109.47104 * 240.00206 * 16 14 12 20 20 O 1.34040 * 106.44524 * 0.23584 * 4 3 2 21 21 N 1.20921 * 111.56553 * 359.56758 * 20 4 3 22 22 H 1.08998 * 109.46897 * 89.99996 * 1 2 3 23 23 H 1.08999 * 109.46999 * 210.00409 * 1 2 3 24 24 H 1.08999 * 109.46963 * 330.00352 * 1 2 3 25 25 H 1.08008 * 128.00828 * 0.03025 * 3 2 1 26 26 H 1.08995 * 109.46956 * 329.99264 * 5 4 3 27 27 H 1.09001 * 109.46317 * 209.99711 * 5 4 3 28 28 H 0.97000 * 120.00580 * 0.02562 * 6 5 4 29 29 H 1.09004 * 109.47239 * 60.00118 * 11 9 7 30 30 H 1.09005 * 109.47323 * 180.02562 * 11 9 7 31 31 H 1.09006 * 109.47458 * 299.99989 * 11 9 7 32 32 H 0.97006 * 119.99301 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1320 0.0000 4 6 3.6025 0.6068 -0.0006 5 6 4.9022 1.3696 -0.0014 6 7 5.3240 1.6171 1.3795 7 6 6.4672 2.2874 1.6250 8 8 7.1465 2.6862 0.7027 9 6 6.8980 2.5474 3.0455 10 1 7.0378 1.5980 3.5624 11 6 5.8224 3.3653 3.7631 12 6 8.1952 3.3146 3.0446 13 1 8.6613 3.5863 2.1090 14 6 8.7870 3.6696 4.2382 15 7 8.2197 3.3382 5.3776 16 14 10.3953 4.6198 4.2371 17 1 10.8231 4.8671 2.8368 18 1 10.2036 5.9180 4.9323 19 1 11.4372 3.8303 4.9415 20 8 3.4538 -0.7253 -0.0062 21 7 2.2869 -1.0423 -0.0004 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 2.0709 2.1743 0.0004 26 1 4.7648 2.3209 -0.5154 27 1 5.6657 0.7858 -0.5155 28 1 4.7810 1.2979 2.1172 29 1 4.8841 2.8106 3.7637 30 1 6.1342 3.5538 4.7904 31 1 5.6827 4.3149 3.2462 32 1 8.6360 3.5883 6.2174 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596932905.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:59:15 Heat of formation + Delta-G solvation = 13.329852 kcal Electronic energy + Delta-G solvation = -16385.037415 eV Core-core repulsion = 13541.872566 eV Total energy + Delta-G solvation = -2843.164848 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -45.03174 -38.89005 -35.07913 -34.74402 -33.76052 -31.84061 -30.33953 -28.86286 -26.53867 -25.14436 -23.21272 -22.38741 -20.34236 -19.49974 -17.69212 -17.46736 -16.32037 -16.01224 -15.14616 -14.79899 -14.64304 -14.20605 -13.59330 -13.52249 -13.21390 -13.01502 -12.84042 -12.48987 -12.15508 -11.54765 -11.23807 -11.03989 -10.74903 -10.68251 -10.27994 -10.16060 -9.98386 -9.72572 -8.98363 -8.67413 -8.61553 -8.35256 -6.04386 -4.07736 1.25473 2.06256 2.92661 3.32211 3.39907 3.47998 3.63764 3.92319 4.03163 4.28427 4.47339 4.87575 5.02600 5.15614 5.22480 5.29186 5.42015 5.49631 5.65117 5.73684 5.94136 6.17618 6.59374 6.79902 6.83409 6.91945 7.44777 7.73163 7.94810 8.09336 8.13339 8.36846 9.01564 9.12765 9.58013 11.03259 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.055113 B = 0.004628 C = 0.004462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.923231 B = 6049.297581 C = 6273.034676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.011 3.989 3 C -0.216 4.216 4 C -0.035 4.035 5 C 0.200 3.800 6 N -0.745 5.745 7 C 0.523 3.477 8 O -0.542 6.542 9 C 0.030 3.970 10 H 0.054 0.946 11 C -0.132 4.132 12 C -0.501 4.501 13 H 0.075 0.925 14 C 0.058 3.942 15 N -0.896 5.896 16 Si 0.900 3.100 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.284 1.284 20 O 0.105 5.895 21 N -0.365 5.365 22 H 0.079 0.921 23 H 0.075 0.925 24 H 0.082 0.918 25 H 0.174 0.826 26 H 0.097 0.903 27 H 0.086 0.914 28 H 0.400 0.600 29 H 0.012 0.988 30 H 0.094 0.906 31 H 0.032 0.968 32 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.963 -4.359 -7.780 16.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.148 4.148 3 C -0.238 4.238 4 C -0.099 4.099 5 C 0.075 3.925 6 N -0.401 5.401 7 C 0.313 3.687 8 O -0.417 6.417 9 C 0.009 3.991 10 H 0.072 0.928 11 C -0.191 4.191 12 C -0.539 4.539 13 H 0.094 0.906 14 C -0.143 4.143 15 N -0.536 5.536 16 Si 0.728 3.272 17 H -0.195 1.195 18 H -0.211 1.211 19 H -0.210 1.210 20 O 0.038 5.962 21 N -0.069 5.069 22 H 0.098 0.902 23 H 0.094 0.906 24 H 0.101 0.899 25 H 0.191 0.809 26 H 0.114 0.886 27 H 0.104 0.896 28 H 0.234 0.766 29 H 0.031 0.969 30 H 0.112 0.888 31 H 0.051 0.949 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.631 -5.363 -8.279 16.826 hybrid contribution 0.366 1.139 0.431 1.272 sum -13.265 -4.224 -7.847 15.981 Atomic orbital electron populations 1.20158 0.85898 1.03844 1.03291 1.23635 0.99101 0.88866 1.03153 1.22525 0.91051 1.01338 1.08856 1.24613 0.98392 0.83742 1.03182 1.19540 0.88128 0.97646 0.87154 1.46387 1.26674 1.61004 1.06083 1.22070 0.77839 0.74497 0.94255 1.90549 1.53494 1.50487 1.47184 1.18900 0.96252 0.98377 0.85601 0.92788 1.21751 0.94563 0.98081 1.04658 1.21184 1.04715 1.34560 0.93480 0.90641 1.24957 0.97866 0.96075 0.95377 1.69886 1.39276 1.47182 0.97240 0.86391 0.83177 0.79414 0.78242 1.19528 1.21066 1.21040 1.84850 1.21467 1.22810 1.67107 1.73861 0.89396 1.24230 1.19408 0.90235 0.90576 0.89929 0.80858 0.88551 0.89580 0.76614 0.96928 0.88779 0.94922 0.92995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.57 10.47 36.01 0.38 -0.19 16 2 C 0.01 0.13 7.33 -82.10 -0.60 -0.48 16 3 C -0.22 -2.37 11.06 -39.38 -0.44 -2.81 16 4 C -0.04 -0.44 6.86 -35.30 -0.24 -0.68 16 5 C 0.20 2.75 6.24 -5.19 -0.03 2.71 16 6 N -0.74 -12.36 5.44 -61.47 -0.33 -12.69 16 7 C 0.52 11.46 7.15 -10.98 -0.08 11.38 16 8 O -0.54 -13.54 15.46 5.55 0.09 -13.45 16 9 C 0.03 0.72 2.64 -92.92 -0.25 0.48 16 10 H 0.05 1.37 8.14 -51.93 -0.42 0.94 16 11 C -0.13 -2.97 8.86 37.16 0.33 -2.64 16 12 C -0.50 -13.99 8.37 -34.44 -0.29 -14.28 16 13 H 0.08 2.22 6.75 -52.49 -0.35 1.87 16 14 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 15 N -0.90 -24.93 11.32 55.43 0.63 -24.30 16 16 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 17 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 O 0.10 1.46 11.20 17.18 0.19 1.65 16 21 N -0.36 -5.04 12.07 33.42 0.40 -4.64 16 22 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.17 1.51 8.06 -52.48 -0.42 1.08 16 26 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 27 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.40 5.99 7.87 -40.82 -0.32 5.67 16 29 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 30 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 282.23 15.07 4.25 4.25 Total: -1.00 -31.24 282.23 -5.00 -36.25 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -3.90 Total: 1.39 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -1.31 Total: -5.01 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 0.70 Total: -41.63 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.28 Total: -11.80 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -31.24 -5.00 -36.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596932905.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.579 kcal (2) G-P(sol) polarization free energy of solvation -31.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds