Wall clock time and date at job start Mon Mar 30 2020 20:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31509 * 120.00195 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46809 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46948 * 120.00245 * 8 6 4 11 11 H 1.48497 * 109.47378 * 240.00531 * 8 6 4 12 12 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 13 13 O 1.20822 * 120.00115 * 240.00066 * 12 2 1 14 14 O 1.34234 * 119.99749 * 59.99914 * 12 2 1 15 15 C 1.45203 * 117.00028 * 179.97438 * 14 12 2 16 16 C 1.50692 * 109.47295 * 180.02562 * 15 14 12 17 17 C 1.39869 * 125.89786 * 359.71600 * 16 15 14 18 18 C 1.35321 * 107.92154 * 179.86477 * 17 16 15 19 19 N 1.34942 * 107.74131 * 0.39363 * 18 17 16 20 20 C 1.46506 * 126.03345 * 179.74720 * 19 18 17 21 21 N 1.30832 * 125.90081 * 180.02562 * 16 15 14 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 25 25 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 26 26 H 1.09004 * 109.47093 * 300.00565 * 15 14 12 27 27 H 1.09002 * 109.46827 * 59.99933 * 15 14 12 28 28 H 1.08003 * 126.04012 * 359.97438 * 17 16 15 29 29 H 1.07999 * 126.12561 * 180.15048 * 18 17 16 30 30 H 1.08989 * 109.47440 * 269.97469 * 20 19 18 31 31 H 1.08997 * 109.47270 * 29.98519 * 20 19 18 32 32 H 1.09003 * 109.46647 * 149.97615 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 0.9428 0.8297 2.6034 8 14 2.3213 -1.1202 4.0081 9 1 3.1464 -2.2868 3.6039 10 1 3.1465 -0.1871 4.8166 11 1 1.1661 -1.5866 4.8161 12 6 2.0324 -0.7104 -1.2304 13 8 2.7270 -1.6928 -1.1195 14 8 1.7081 -0.2518 -2.4496 15 6 2.2278 -0.9857 -3.5896 16 6 1.7638 -0.3286 -4.8639 17 6 0.9532 0.8078 -4.9526 18 6 0.7651 1.0837 -6.2640 19 7 1.4257 0.1497 -6.9796 20 6 1.4849 0.0662 -8.4411 21 7 2.0449 -0.7259 -6.0783 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 0.7081 1.1610 3.4844 26 1 3.3173 -0.9846 -3.5564 27 1 1.8644 -2.0128 -3.5568 28 1 0.5503 1.3674 -4.1214 29 1 0.1864 1.9023 -6.6657 30 1 0.6609 -0.5482 -8.8036 31 1 1.4061 1.0670 -8.8657 32 1 2.4320 -0.3822 -8.7413 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118405015.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:58:54 Heat of formation + Delta-G solvation = -30.640326 kcal Electronic energy + Delta-G solvation = -16328.762556 eV Core-core repulsion = 13483.691017 eV Total energy + Delta-G solvation = -2845.071538 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 238.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.21078 -41.27067 -37.59647 -35.90676 -34.51579 -32.65892 -31.22752 -29.73056 -27.25602 -26.38034 -24.76766 -22.30682 -21.29278 -20.96295 -18.61933 -18.11530 -17.94493 -17.49210 -17.14599 -16.35116 -16.08682 -15.15239 -14.90997 -14.65363 -14.54592 -14.19801 -13.62548 -13.31340 -13.23351 -13.03664 -12.94431 -12.72226 -12.57765 -12.27397 -12.05101 -11.85519 -11.71490 -11.08217 -11.05864 -10.51416 -10.26042 -9.53351 -8.18170 -6.31077 0.83558 1.34965 1.41956 1.44568 1.45459 1.58649 1.71529 2.01425 2.46086 3.12021 3.47568 3.87184 4.05674 4.16503 4.18841 4.34626 4.47104 4.69637 4.72189 4.73092 4.86526 4.93140 5.02541 5.09644 5.39045 5.48595 5.53794 5.71644 5.91404 6.12638 6.15386 6.61334 6.75512 7.02998 7.37680 8.88475 Molecular weight = 238.11amu Principal moments of inertia in cm(-1) A = 0.066899 B = 0.004537 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.439878 B = 6170.244141 C = 6495.021976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.052 3.948 3 H 0.055 0.945 4 C -0.539 4.539 5 H 0.056 0.944 6 C 0.024 3.976 7 N -0.908 5.908 8 Si 0.963 3.037 9 H -0.277 1.277 10 H -0.273 1.273 11 H -0.272 1.272 12 C 0.476 3.524 13 O -0.542 6.542 14 O -0.349 6.349 15 C 0.147 3.853 16 C 0.054 3.946 17 C -0.277 4.277 18 C 0.071 3.929 19 N -0.375 5.375 20 C 0.092 3.908 21 N -0.324 5.324 22 H 0.028 0.972 23 H 0.051 0.949 24 H 0.078 0.922 25 H 0.268 0.732 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.152 0.848 29 H 0.225 0.775 30 H 0.088 0.912 31 H 0.123 0.877 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.708 3.134 -19.386 19.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.033 3.967 3 H 0.073 0.927 4 C -0.577 4.577 5 H 0.074 0.926 6 C -0.176 4.176 7 N -0.546 5.546 8 Si 0.788 3.212 9 H -0.202 1.202 10 H -0.199 1.199 11 H -0.198 1.198 12 C 0.321 3.679 13 O -0.431 6.431 14 O -0.266 6.266 15 C 0.071 3.929 16 C -0.110 4.110 17 C -0.306 4.306 18 C -0.075 4.075 19 N -0.158 5.158 20 C -0.047 4.047 21 N -0.151 5.151 22 H 0.047 0.953 23 H 0.070 0.930 24 H 0.097 0.903 25 H 0.078 0.922 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.170 0.830 29 H 0.242 0.758 30 H 0.107 0.893 31 H 0.142 0.858 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.969 2.088 -20.143 20.346 hybrid contribution 0.097 -0.054 1.353 1.357 sum -1.872 2.033 -18.790 18.992 Atomic orbital electron populations 1.21567 0.94152 0.99945 1.02168 1.18704 0.96050 0.96252 0.85659 0.92717 1.21299 1.32622 1.13291 0.90512 0.92589 1.25613 0.94889 0.95652 1.01483 1.69960 1.36612 1.23377 1.24691 0.85425 0.78362 0.78519 0.78871 1.20208 1.19861 1.19778 1.24950 0.76007 0.82595 0.84338 1.90490 1.37495 1.27820 1.87280 1.86501 1.69892 1.55472 1.14708 1.20640 0.98571 0.94012 0.79643 1.21697 0.99571 0.97395 0.92343 1.21611 1.09054 1.01805 0.98112 1.23220 0.97501 0.95728 0.91065 1.48916 1.38316 1.20673 1.07869 1.22280 1.04856 1.06259 0.71282 1.77145 1.22219 1.17182 0.98521 0.95304 0.92979 0.90302 0.92241 0.89979 0.89990 0.82987 0.75840 0.89318 0.85826 0.89374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.70 8.90 71.98 0.64 -5.06 16 2 C 0.05 2.71 2.74 -12.29 -0.03 2.68 16 3 H 0.06 2.92 8.14 -2.39 -0.02 2.90 16 4 C -0.54 -30.95 8.37 25.60 0.21 -30.73 16 5 H 0.06 3.39 6.76 -2.91 -0.02 3.37 16 6 C 0.02 1.30 5.30 84.65 0.45 1.75 16 7 N -0.91 -50.35 11.32 21.44 0.24 -50.11 16 8 Si 0.96 44.11 29.54 68.60 2.03 46.14 16 9 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 12 C 0.48 23.01 7.25 71.23 0.52 23.52 16 13 O -0.54 -28.64 15.21 21.98 0.33 -28.31 16 14 O -0.35 -14.35 9.46 -51.45 -0.49 -14.84 16 15 C 0.15 5.31 6.09 71.23 0.43 5.75 16 16 C 0.05 1.76 7.19 43.10 0.31 2.07 16 17 C -0.28 -7.68 10.14 21.99 0.22 -7.46 16 18 C 0.07 1.39 11.49 83.54 0.96 2.35 16 19 N -0.37 -8.00 4.01 -369.57 -1.48 -9.49 16 20 C 0.09 0.91 11.47 127.77 1.47 2.38 16 21 N -0.32 -9.89 12.58 -47.39 -0.60 -10.48 16 22 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.05 2.12 8.11 -2.39 -0.02 2.10 16 24 H 0.08 4.01 6.07 -2.38 -0.01 4.00 16 25 H 0.27 13.95 8.31 -92.70 -0.77 13.18 16 26 H 0.08 2.94 8.13 -2.39 -0.02 2.92 16 27 H 0.08 2.94 8.13 -2.39 -0.02 2.92 16 28 H 0.15 4.23 7.90 -2.91 -0.02 4.21 16 29 H 0.23 1.92 8.06 -2.91 -0.02 1.90 16 30 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -70.29 284.57 6.33 -63.96 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: 1.11 Total: 5.88 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: 5.18 Total: -2.76 kcal Atomic # 7 Polarization: -68.24 SS G_CDS: -1.84 Total: -70.08 kcal Atomic # 8 Polarization: -42.99 SS G_CDS: -0.15 Total: -43.15 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -70.29 6.33 -63.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118405015.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.322 kcal (2) G-P(sol) polarization free energy of solvation -70.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds