Wall clock time and date at job start Mon Mar 30 2020 20:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46493 * 120.00066 * 2 1 4 4 C 1.50706 * 109.47128 * 90.00240 * 3 2 1 5 5 H 1.08000 * 119.99302 * 359.97438 * 4 3 2 6 6 C 1.37871 * 120.00436 * 179.72498 * 4 3 2 7 7 N 1.31515 * 119.99684 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00405 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.46683 * 359.97438 * 8 6 4 10 10 H 1.48492 * 109.47426 * 119.99743 * 8 6 4 11 11 H 1.48501 * 109.46833 * 239.99986 * 8 6 4 12 12 C 1.34771 * 119.99478 * 180.02562 * 2 1 3 13 13 O 1.21285 * 119.99971 * 179.97438 * 12 2 1 14 14 C 1.50699 * 120.00631 * 0.02562 * 12 2 1 15 15 H 1.09004 * 115.55904 * 325.58005 * 14 12 2 16 16 C 1.52357 * 117.52693 * 111.36112 * 14 12 2 17 17 H 1.08998 * 116.26439 * 1.32306 * 16 14 12 18 18 C 1.52240 * 119.61040 * 216.34657 * 16 14 12 19 19 N 1.46728 * 110.48066 * 310.54817 * 18 16 14 20 20 C 1.47162 * 110.34138 * 303.65025 * 19 18 16 21 21 C 1.52999 * 108.58717 * 76.10758 * 20 19 18 22 22 C 1.52588 * 60.48863 * 107.44866 * 16 14 12 23 23 H 1.08995 * 117.47203 * 252.70141 * 22 16 14 24 24 H 1.09004 * 109.47155 * 89.99624 * 1 2 3 25 25 H 1.08993 * 109.47381 * 209.99784 * 1 2 3 26 26 H 1.09002 * 109.46817 * 330.00021 * 1 2 3 27 27 H 1.09001 * 109.47786 * 330.00513 * 3 2 1 28 28 H 1.08998 * 109.47558 * 210.00376 * 3 2 1 29 29 H 0.97004 * 120.00247 * 180.02562 * 7 6 4 30 30 H 1.09004 * 109.29905 * 70.86086 * 18 16 14 31 31 H 1.09002 * 109.30016 * 190.24089 * 18 16 14 32 32 H 1.00902 * 110.99921 * 180.17151 * 19 18 16 33 33 H 1.08998 * 109.62189 * 195.84038 * 20 19 18 34 34 H 1.09007 * 109.61844 * 316.20238 * 20 19 18 35 35 H 1.09003 * 109.44063 * 65.92961 * 21 20 19 36 36 H 1.08998 * 109.44093 * 185.86128 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 1.4209 5 1 2.0975 1.0960 2.2417 6 6 3.1315 2.8747 1.6729 7 7 3.5640 3.6118 0.6733 8 14 3.4435 3.4135 3.4341 9 1 2.8601 2.4166 4.3673 10 1 4.9062 3.5153 3.6689 11 1 2.8116 4.7372 3.6660 12 6 2.1388 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0010 14 6 1.3853 -2.4723 -0.0017 15 1 0.4475 -2.4744 0.5538 16 6 1.4600 -3.3273 -1.2605 17 1 2.0777 -2.9400 -2.0707 18 6 0.2360 -4.1134 -1.7096 19 7 -0.3219 -4.8792 -0.5893 20 6 0.7035 -5.7641 -0.0137 21 6 1.6572 -4.9192 0.8332 22 6 2.2101 -3.7681 -0.0069 23 1 3.2958 -3.6722 -0.0108 24 1 -0.3634 0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6085 2.0284 -0.5137 28 1 3.1499 1.1384 -0.5139 29 1 4.0446 4.4355 0.8506 30 1 -0.5186 -3.4218 -2.0846 31 1 0.5208 -4.7986 -2.5080 32 1 -1.1324 -5.4056 -0.8791 33 1 0.2267 -6.5173 0.6135 34 1 1.2571 -6.2528 -0.8155 35 1 1.1197 -4.5155 1.6912 36 1 2.4814 -5.5417 1.1815 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721111802.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:57:19 Heat of formation + Delta-G solvation = -9.364658 kcal Electronic energy + Delta-G solvation = -17213.699777 eV Core-core repulsion = 14505.383915 eV Total energy + Delta-G solvation = -2708.315862 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 238.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.99618 -37.99114 -34.77558 -33.89955 -32.50878 -31.12871 -28.05129 -26.20180 -25.39187 -23.56357 -23.14562 -21.19607 -18.65988 -18.19895 -17.13179 -16.44794 -15.89588 -15.36604 -14.99088 -14.46896 -14.22488 -13.90621 -13.47604 -13.19491 -12.59460 -12.37661 -12.15826 -11.98530 -11.94822 -11.68837 -11.55275 -11.16483 -10.84083 -10.56640 -10.55191 -10.11794 -9.80967 -9.72505 -9.54967 -8.77639 -8.61049 -8.39740 -7.54973 -6.00134 -4.04594 3.22700 3.32780 3.40121 3.45193 3.92364 4.03589 4.15185 4.48465 4.75555 4.96008 4.99612 5.08864 5.24763 5.30470 5.34213 5.36716 5.49472 5.59683 5.72400 5.83253 5.88631 5.94835 6.04718 6.12453 6.22691 6.36367 6.47265 6.81773 7.12858 7.20012 7.49645 7.62483 7.97097 8.28657 8.51960 8.96022 9.20232 9.60635 11.07965 Molecular weight = 238.14amu Principal moments of inertia in cm(-1) A = 0.041670 B = 0.005546 C = 0.005355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.777338 B = 5047.478100 C = 5227.765805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.599 5.599 3 C 0.244 3.756 4 C -0.524 4.524 5 H 0.058 0.942 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.284 1.284 12 C 0.530 3.470 13 O -0.546 6.546 14 C -0.164 4.164 15 H 0.126 0.874 16 C -0.125 4.125 17 H 0.106 0.894 18 C 0.089 3.911 19 N -0.687 5.687 20 C 0.056 3.944 21 C -0.085 4.085 22 C -0.119 4.119 23 H 0.114 0.886 24 H 0.042 0.958 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.032 0.968 28 H 0.043 0.957 29 H 0.262 0.738 30 H 0.081 0.919 31 H 0.036 0.964 32 H 0.342 0.658 33 H 0.072 0.928 34 H 0.036 0.964 35 H 0.073 0.927 36 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.382 -16.616 -3.606 19.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.330 5.330 3 C 0.125 3.875 4 C -0.563 4.563 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.210 1.210 12 C 0.317 3.683 13 O -0.425 6.425 14 C -0.186 4.186 15 H 0.144 0.856 16 C -0.144 4.144 17 H 0.124 0.876 18 C -0.040 4.040 19 N -0.318 5.318 20 C -0.074 4.074 21 C -0.123 4.123 22 C -0.138 4.138 23 H 0.132 0.868 24 H 0.061 0.939 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.099 0.901 31 H 0.055 0.945 32 H 0.160 0.840 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.092 0.908 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.554 -15.893 -3.185 18.327 hybrid contribution 0.168 -0.099 0.283 0.343 sum -8.386 -15.992 -2.903 18.289 Atomic orbital electron populations 1.21632 0.81388 1.02456 1.00318 1.48064 1.06228 1.07601 1.71079 1.19291 0.92537 0.78198 0.97495 1.21494 1.36079 1.06310 0.92367 0.92417 1.24943 0.95381 0.96422 0.97446 1.69949 1.38348 1.14590 1.30650 0.86435 0.78054 0.78272 0.84634 1.19794 1.20885 1.20969 1.19525 0.87393 0.84302 0.77104 1.90643 1.13930 1.87186 1.50712 1.22510 1.02091 0.90707 1.03251 0.85635 1.21970 0.98886 1.01403 0.92130 0.87603 1.21245 0.95478 0.96070 0.91228 1.60525 1.08571 1.29332 1.33421 1.21989 0.93518 0.94015 0.97849 1.21125 0.97951 0.95487 0.97729 1.22303 0.98692 0.94063 0.98745 0.86847 0.93917 0.92152 0.91065 0.95031 0.93926 0.92823 0.90108 0.94547 0.84016 0.90963 0.94580 0.90800 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.47 10.26 59.85 0.61 2.09 16 2 N -0.60 -13.49 2.86 -182.95 -0.52 -14.01 16 3 C 0.24 6.66 5.16 -5.19 -0.03 6.63 16 4 C -0.52 -15.38 9.39 -34.44 -0.32 -15.71 16 5 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16 8 Si 0.90 22.38 29.54 -169.99 -5.02 17.36 16 9 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 C 0.53 11.78 7.45 -10.99 -0.08 11.70 16 13 O -0.55 -14.50 15.85 5.55 0.09 -14.41 16 14 C -0.16 -2.73 4.53 -91.79 -0.42 -3.14 16 15 H 0.13 1.96 6.44 -51.93 -0.33 1.63 16 16 C -0.12 -1.72 5.78 -91.55 -0.53 -2.25 16 17 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 18 C 0.09 0.93 6.51 -4.31 -0.03 0.90 16 19 N -0.69 -6.62 6.64 -114.14 -0.76 -7.38 16 20 C 0.06 0.52 6.52 -3.68 -0.02 0.50 16 21 C -0.09 -0.98 6.08 -26.81 -0.16 -1.15 16 22 C -0.12 -1.76 5.79 -90.60 -0.52 -2.28 16 23 H 0.11 1.89 7.68 -51.93 -0.40 1.49 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.89 6.00 -51.93 -0.31 0.58 16 26 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 27 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 28 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.04 0.34 8.13 -51.93 -0.42 -0.08 16 32 H 0.34 2.49 8.90 -39.29 -0.35 2.14 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.04 0.33 7.97 -51.93 -0.41 -0.08 16 35 H 0.07 0.90 8.07 -51.93 -0.42 0.48 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 296.01 15.07 4.46 4.46 Total: -1.00 -33.89 296.01 -8.15 -42.04 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -5.53 Total: -0.50 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -1.60 Total: -1.05 kcal Atomic # 7 Polarization: -47.36 SS G_CDS: -0.54 Total: -47.91 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: 0.09 Total: -14.41 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -33.89 -8.15 -42.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721111802.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.678 kcal (2) G-P(sol) polarization free energy of solvation -33.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds