Wall clock time and date at job start Mon Mar 30 2020 21:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.45950 * 2 1 4 4 C 1.53032 * 109.45658 * 119.97383 * 2 1 3 5 5 C 1.53119 * 109.27840 * 179.18936 * 4 2 1 6 6 H 1.08991 * 109.52646 * 62.25251 * 5 4 2 7 7 N 1.46901 * 109.52111 * 182.44334 * 5 4 2 8 8 C 1.53120 * 109.15931 * 302.34484 * 5 4 2 9 9 C 1.53037 * 109.27799 * 57.65599 * 8 5 4 10 10 N 1.46844 * 109.52255 * 300.81724 * 9 8 5 11 11 C 1.46902 * 110.99819 * 185.84018 * 10 9 8 12 12 C 1.52995 * 109.47216 * 52.33445 * 11 10 9 13 13 C 1.50702 * 115.55111 * 54.37695 * 12 11 10 14 14 H 1.07997 * 119.99694 * 246.91721 * 13 12 11 15 15 C 1.37879 * 119.99832 * 66.91101 * 13 12 11 16 16 N 1.31515 * 119.99993 * 8.19535 * 15 13 12 17 17 Si 1.86800 * 119.99740 * 188.18728 * 15 13 12 18 18 H 1.48506 * 109.46816 * 175.00593 * 17 15 13 19 19 H 1.48500 * 109.47013 * 55.01108 * 17 15 13 20 20 H 1.48497 * 109.47463 * 295.00684 * 17 15 13 21 21 C 1.53000 * 117.51815 * 200.07917 * 12 11 10 22 22 C 1.52992 * 60.00095 * 107.48006 * 21 12 11 23 23 H 1.08999 * 109.46853 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46868 * 299.97139 * 1 2 3 25 25 H 1.08992 * 109.47384 * 59.97919 * 1 2 3 26 26 H 1.08992 * 109.50533 * 299.13068 * 4 2 1 27 27 H 1.09001 * 109.50210 * 59.20972 * 4 2 1 28 28 H 1.00906 * 111.00021 * 180.02562 * 7 5 4 29 29 H 1.00901 * 111.00156 * 303.94884 * 7 5 4 30 30 H 1.09008 * 109.50234 * 177.59690 * 8 5 4 31 31 H 1.08999 * 109.50529 * 297.67298 * 8 5 4 32 32 H 1.09008 * 109.46148 * 180.80193 * 9 8 5 33 33 H 1.08999 * 109.46140 * 60.83503 * 9 8 5 34 34 H 1.09000 * 109.46823 * 292.33265 * 11 10 9 35 35 H 1.09001 * 109.46886 * 172.33649 * 11 10 9 36 36 H 0.97000 * 119.99830 * 4.45723 * 16 15 13 37 37 H 1.09005 * 117.49940 * 214.97673 * 21 12 11 38 38 H 1.09003 * 117.49948 * 359.97438 * 21 12 11 39 39 H 1.09003 * 117.50219 * 252.51052 * 22 21 12 40 40 H 1.09001 * 117.50131 * 107.48918 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7209 1.2499 5 6 3.5708 -0.7363 1.2356 6 1 3.9457 0.2867 1.2673 7 7 4.0652 -1.4779 2.4033 8 6 4.0546 -1.4191 -0.0466 9 6 3.4864 -0.6779 -1.2590 10 7 2.0193 -0.6918 -1.1994 11 6 1.4374 -0.1106 -2.4166 12 6 2.0346 -0.7982 -3.6459 13 6 1.9211 -2.3008 -3.6696 14 1 2.8096 -2.9106 -3.5984 15 6 0.6829 -2.8969 -3.7820 16 7 -0.3800 -2.1632 -4.0299 17 14 0.5153 -4.7466 -3.5822 18 1 -0.9210 -5.1211 -3.6270 19 1 1.0937 -5.1580 -2.2778 20 1 1.2398 -5.4311 -4.6830 21 6 1.9404 -0.0615 -4.9836 22 6 3.2867 -0.1745 -4.2657 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5134 0.8903 25 1 -0.3634 0.5141 -0.8897 26 1 1.6894 -0.1982 2.1399 27 1 1.6651 -1.7444 1.2580 28 1 5.0739 -1.5016 2.4162 29 1 3.7021 -1.0875 3.2600 30 1 5.1438 -1.3952 -0.0830 31 1 3.7128 -2.4541 -0.0590 32 1 3.8174 -1.1702 -2.1735 33 1 3.8404 0.3529 -1.2531 34 1 1.6605 0.9557 -2.4525 35 1 0.3571 -0.2557 -2.4080 36 1 -0.2848 -1.2126 -4.1978 37 1 1.7962 -0.6636 -5.8807 38 1 1.4524 0.9132 -4.9881 39 1 3.6848 0.7259 -3.7978 40 1 4.0284 -0.8510 -4.6905 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168947708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:00:45 Heat of formation + Delta-G solvation = 18.331731 kcal Electronic energy + Delta-G solvation = -18442.435419 eV Core-core repulsion = 15871.153657 eV Total energy + Delta-G solvation = -2571.281762 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 238.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.13843 -36.74737 -34.38727 -31.90540 -31.66871 -29.80692 -26.60928 -25.36154 -24.61135 -22.42904 -21.24349 -20.50358 -19.24137 -19.08123 -16.51993 -15.52370 -15.23816 -14.90082 -14.68416 -14.06114 -13.72309 -13.62561 -13.04586 -12.79277 -12.61922 -12.15979 -11.77034 -11.54478 -11.36278 -11.30377 -10.76112 -10.71632 -10.56860 -10.54708 -10.41180 -10.08070 -10.02704 -9.90001 -9.28783 -8.61696 -8.56135 -8.36258 -8.05366 -7.34988 -6.18016 -3.87187 3.53050 3.59046 3.74633 4.48067 4.59074 4.66775 5.05507 5.13641 5.24626 5.41666 5.52141 5.57256 5.70398 5.82731 5.88312 5.92269 6.00914 6.11144 6.15279 6.18123 6.28524 6.31748 6.40008 6.46680 6.56101 6.57798 6.64906 6.70352 6.82454 6.85808 6.99232 7.25299 7.27445 7.33522 7.48480 7.96912 8.06304 8.42061 8.56713 9.02705 9.82549 11.20319 Molecular weight = 238.17amu Principal moments of inertia in cm(-1) A = 0.021014 B = 0.009338 C = 0.008451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.126743 B = 2997.773663 C = 3312.517118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.083 3.917 3 H 0.022 0.978 4 C -0.100 4.100 5 C 0.091 3.909 6 H 0.023 0.977 7 N -0.845 5.845 8 C -0.107 4.107 9 C 0.063 3.937 10 N -0.500 5.500 11 C 0.098 3.902 12 C 0.037 3.963 13 C -0.544 4.544 14 H 0.048 0.952 15 C 0.034 3.966 16 N -0.909 5.909 17 Si 1.060 2.940 18 H -0.286 1.286 19 H -0.286 1.286 20 H -0.293 1.293 21 C -0.194 4.194 22 C -0.202 4.202 23 H 0.068 0.932 24 H 0.048 0.952 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.081 0.919 28 H 0.337 0.663 29 H 0.335 0.665 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.009 0.991 34 H -0.005 1.005 35 H 0.081 0.919 36 H 0.271 0.729 37 H 0.082 0.918 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.870 4.821 9.288 11.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.027 4.027 3 H 0.040 0.960 4 C -0.139 4.139 5 C -0.020 4.020 6 H 0.041 0.959 7 N -0.374 5.374 8 C -0.145 4.145 9 C -0.065 4.065 10 N -0.224 5.224 11 C -0.030 4.030 12 C 0.036 3.964 13 C -0.581 4.581 14 H 0.066 0.934 15 C -0.171 4.171 16 N -0.544 5.544 17 Si 0.889 3.111 18 H -0.211 1.211 19 H -0.213 1.213 20 H -0.220 1.220 21 C -0.232 4.232 22 C -0.239 4.239 23 H 0.087 0.913 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.100 0.900 28 H 0.149 0.851 29 H 0.147 0.853 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.027 0.973 34 H 0.013 0.987 35 H 0.099 0.901 36 H 0.082 0.918 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.211 2.465 9.055 10.286 hybrid contribution 1.948 3.193 0.139 3.743 sum 6.159 5.659 9.194 12.429 Atomic orbital electron populations 1.21845 0.94468 1.03006 1.00756 1.21547 0.95508 0.94251 0.91379 0.95979 1.21607 0.93808 1.02294 0.96165 1.21418 0.95660 0.93877 0.91058 0.95857 1.58737 1.13682 1.60224 1.04782 1.21607 0.98560 1.01607 0.92762 1.22059 0.88348 0.96886 0.99214 1.61732 1.06017 1.53951 1.00727 1.21718 1.00152 0.91769 0.89330 1.19136 0.94055 0.95053 0.88185 1.21027 0.95042 0.87786 1.54286 0.93400 1.25540 0.92138 1.06004 0.93395 1.70738 1.31121 1.08933 1.43631 0.83686 0.75787 0.75152 0.76441 1.21122 1.21268 1.21965 1.22935 0.99997 1.00525 0.99748 1.22855 0.91952 1.01556 1.07542 0.91299 0.93314 0.92434 0.92765 0.90019 0.85125 0.85268 0.92832 0.89995 0.88466 0.97319 0.98656 0.90122 0.91799 0.89989 0.91959 0.91910 0.90378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 8.76 37.16 0.33 -2.11 16 2 C 0.08 1.44 2.44 -67.72 -0.17 1.28 16 3 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 4 C -0.10 -1.55 4.92 -26.65 -0.13 -1.68 16 5 C 0.09 1.31 3.31 -67.59 -0.22 1.09 16 6 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 7 N -0.85 -10.32 9.25 -4.56 -0.04 -10.36 16 8 C -0.11 -1.76 5.68 -26.65 -0.15 -1.92 16 9 C 0.06 1.20 4.75 -3.84 -0.02 1.19 16 10 N -0.50 -10.30 4.28 -226.69 -0.97 -11.27 16 11 C 0.10 2.20 4.18 -3.83 -0.02 2.18 16 12 C 0.04 0.88 0.13 -155.66 -0.02 0.86 16 13 C -0.54 -14.74 8.02 -34.44 -0.28 -15.02 16 14 H 0.05 1.33 7.83 -52.49 -0.41 0.92 16 15 C 0.03 0.95 5.39 -17.82 -0.10 0.86 16 16 N -0.91 -26.54 13.30 55.43 0.74 -25.80 16 17 Si 1.06 25.48 29.91 -169.99 -5.08 20.39 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 C -0.19 -4.44 9.27 -26.74 -0.25 -4.69 16 22 C -0.20 -4.34 8.13 -26.74 -0.22 -4.56 16 23 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 1.03 6.40 -51.93 -0.33 0.70 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 28 H 0.34 3.53 9.04 -39.29 -0.36 3.18 16 29 H 0.34 3.45 9.00 -39.29 -0.35 3.10 16 30 H 0.05 0.78 8.14 -51.92 -0.42 0.36 16 31 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.10 2.06 5.30 -51.92 -0.28 1.78 16 33 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 34 H 0.00 -0.10 8.09 -51.93 -0.42 -0.52 16 35 H 0.08 1.97 5.38 -51.93 -0.28 1.70 16 36 H 0.27 7.86 6.13 -40.82 -0.25 7.61 16 37 H 0.08 1.98 8.14 -51.93 -0.42 1.56 16 38 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 LS Contribution 306.07 15.07 4.61 4.61 Total: -1.00 -28.77 306.07 -8.95 -37.72 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -6.97 Total: 7.24 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: -1.24 Total: -22.53 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: -0.28 Total: -47.43 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -5.08 Total: 20.39 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.77 -8.95 -37.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168947708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.052 kcal (2) G-P(sol) polarization free energy of solvation -28.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds