Wall clock time and date at job start Mon Mar 30 2020 21:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29460 * 120.00000 * 2 1 4 4 O 1.41595 * 120.00133 * 184.79869 * 3 2 1 5 5 C 1.47386 * 119.99936 * 180.02562 * 2 1 3 6 6 C 1.39659 * 120.16898 * 114.47690 * 5 2 1 7 7 C 1.37817 * 119.93800 * 180.29536 * 6 5 2 8 8 C 1.38787 * 120.28740 * 359.43014 * 7 6 5 9 9 F 1.35101 * 119.82769 * 180.27830 * 8 7 6 10 10 C 1.38329 * 120.33843 * 0.29521 * 8 7 6 11 11 C 1.38685 * 120.05803 * 0.02562 * 10 8 7 12 12 O 1.35586 * 120.14160 * 179.97438 * 11 10 8 13 13 C 1.34807 * 117.00447 * 354.44174 * 12 11 10 14 14 H 1.07999 * 120.00227 * 5.06988 * 13 12 11 15 15 C 1.38672 * 120.00122 * 185.06819 * 13 12 11 16 16 N 1.31538 * 119.99768 * 5.03825 * 15 13 12 17 17 Si 1.86799 * 119.99928 * 185.03775 * 15 13 12 18 18 H 1.48504 * 109.47142 * 90.00046 * 17 15 13 19 19 H 1.48499 * 109.46852 * 210.00065 * 17 15 13 20 20 H 1.48502 * 109.47220 * 330.00034 * 17 15 13 21 21 H 1.09004 * 109.47175 * 270.00051 * 1 2 3 22 22 H 1.08999 * 109.47390 * 29.99865 * 1 2 3 23 23 H 1.09004 * 109.47372 * 150.00088 * 1 2 3 24 24 H 0.96703 * 114.00289 * 175.00299 * 4 3 2 25 25 H 1.08002 * 120.03162 * 359.97438 * 6 5 2 26 26 H 1.07998 * 119.85750 * 179.70703 * 7 6 5 27 27 H 1.08004 * 119.97490 * 179.97438 * 10 8 7 28 28 H 0.97006 * 119.99824 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1543 1.1212 0.0000 4 8 3.5665 1.1233 -0.1026 5 6 2.2439 -1.2764 -0.0006 6 6 3.0281 -1.6336 -1.0996 7 6 3.7103 -2.8311 -1.0977 8 6 3.6313 -3.6799 -0.0024 9 9 4.3084 -4.8489 -0.0081 10 6 2.8627 -3.3351 1.0947 11 6 2.1650 -2.1365 1.1051 12 8 1.4106 -1.7972 2.1794 13 6 1.2874 -2.7179 3.1563 14 1 1.8435 -3.6421 3.1006 15 6 0.4468 -2.4784 4.2328 16 7 -0.3051 -1.3993 4.2528 17 14 0.3821 -3.6884 5.6546 18 1 1.3903 -3.3065 6.6758 19 1 -0.9723 -3.6650 6.2631 20 1 0.6768 -5.0554 5.1550 21 1 -0.3634 0.0000 1.0277 22 1 -0.3634 0.8900 -0.5138 23 1 -0.3634 -0.8900 -0.5138 24 1 3.9546 2.0064 -0.1709 25 1 3.0957 -0.9745 -1.9525 26 1 4.3125 -3.1082 -1.9503 27 1 2.8051 -4.0002 1.9437 28 1 -0.8929 -1.2316 5.0060 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062748607.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:00:20 Heat of formation + Delta-G solvation = -63.987259 kcal Electronic energy + Delta-G solvation = -16683.555660 eV Core-core repulsion = 13615.859123 eV Total energy + Delta-G solvation = -3067.696537 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.92185 -40.99322 -38.59834 -37.48779 -35.08241 -34.35053 -31.28086 -30.42779 -29.09182 -27.43658 -24.14099 -23.51096 -20.82565 -20.15050 -19.40418 -18.44293 -17.29365 -17.01024 -16.72361 -16.52448 -15.99860 -15.64522 -15.28326 -15.09817 -14.89061 -14.57554 -13.96198 -13.66459 -13.50440 -13.42618 -13.13925 -12.89799 -12.41080 -12.34094 -12.14074 -11.70788 -10.90364 -10.85120 -10.48716 -9.73769 -9.14341 -8.53079 -6.21178 0.05038 0.47965 1.04375 1.35719 1.43158 1.51536 2.12973 2.30081 2.58041 3.02247 3.14676 3.39970 3.59167 3.92376 4.14276 4.34535 4.60682 4.68463 4.74341 4.79965 4.98845 5.06725 5.20047 5.24910 5.36730 5.42933 5.89476 5.95331 5.98625 6.89771 6.90703 7.61082 8.67229 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.019182 B = 0.009791 C = 0.007021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.329250 B = 2859.140174 C = 3986.863685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.200 3.800 3 N -0.356 5.356 4 O -0.418 6.418 5 C -0.188 4.188 6 C -0.006 4.006 7 C -0.223 4.223 8 C 0.146 3.854 9 F -0.143 7.143 10 C -0.285 4.285 11 C 0.168 3.832 12 O -0.196 6.196 13 C -0.423 4.423 14 H 0.099 0.901 15 C -0.007 4.007 16 N -0.901 5.901 17 Si 1.013 2.987 18 H -0.267 1.267 19 H -0.267 1.267 20 H -0.255 1.255 21 H 0.069 0.931 22 H 0.099 0.901 23 H 0.092 0.908 24 H 0.411 0.589 25 H 0.153 0.847 26 H 0.162 0.838 27 H 0.133 0.867 28 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.613 -0.399 -8.377 9.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.010 3.990 3 N -0.099 5.099 4 O -0.327 6.327 5 C -0.191 4.191 6 C -0.025 4.025 7 C -0.242 4.242 8 C 0.126 3.874 9 F -0.122 7.122 10 C -0.305 4.305 11 C 0.114 3.886 12 O -0.100 6.100 13 C -0.499 4.499 14 H 0.117 0.883 15 C -0.207 4.207 16 N -0.537 5.537 17 Si 0.832 3.168 18 H -0.192 1.192 19 H -0.192 1.192 20 H -0.179 1.179 21 H 0.088 0.912 22 H 0.118 0.882 23 H 0.110 0.890 24 H 0.261 0.739 25 H 0.171 0.829 26 H 0.180 0.820 27 H 0.150 0.850 28 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.204 0.251 -8.098 8.712 hybrid contribution 0.601 -0.907 0.980 1.465 sum 3.806 -0.657 -7.117 8.098 Atomic orbital electron populations 1.20660 0.85692 1.04649 1.03600 1.23743 0.96959 0.88071 0.90249 1.76516 0.91639 1.24408 1.17342 1.88512 1.13161 1.36038 1.95027 1.18732 1.07787 0.97267 0.95358 1.20821 0.91041 0.94838 0.95784 1.20899 1.07910 0.95923 0.99445 1.17631 0.92497 0.82165 0.95115 1.91441 1.77890 1.45943 1.96877 1.21028 1.06959 1.00968 1.01524 1.19385 0.90067 0.91669 0.87517 1.83934 1.60077 1.41049 1.24918 1.21798 1.28358 1.00007 0.99705 0.88325 1.26436 0.93894 0.99645 1.00742 1.70133 1.23927 1.27459 1.32159 0.84667 0.78529 0.77397 0.76191 1.19197 1.19174 1.17891 0.91222 0.88188 0.88965 0.73906 0.82895 0.82005 0.84984 0.91473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.08 10.06 71.24 0.72 -2.36 15 2 C 0.20 7.92 6.14 45.32 0.28 8.19 15 3 N -0.36 -13.57 12.12 -43.02 -0.52 -14.09 15 4 O -0.42 -14.23 13.69 -38.77 -0.53 -14.76 15 5 C -0.19 -7.75 4.88 -20.02 -0.10 -7.85 15 6 C -0.01 -0.19 9.14 22.51 0.21 0.02 15 7 C -0.22 -7.17 10.00 22.30 0.22 -6.94 15 8 C 0.15 5.49 7.30 22.42 0.16 5.65 15 9 F -0.14 -5.08 17.26 44.97 0.78 -4.30 15 10 C -0.28 -12.60 9.13 22.40 0.20 -12.40 15 11 C 0.17 8.08 6.65 22.88 0.15 8.23 15 12 O -0.20 -10.97 9.08 -20.70 -0.19 -11.16 15 13 C -0.42 -23.45 9.48 67.92 0.64 -22.81 15 14 H 0.10 5.13 5.21 -2.91 -0.02 5.11 15 15 C -0.01 -0.36 5.49 84.84 0.47 0.10 15 16 N -0.90 -51.68 13.68 21.62 0.30 -51.39 15 17 Si 1.01 41.15 29.55 68.60 2.03 43.18 15 18 H -0.27 -10.52 7.11 99.48 0.71 -9.81 15 19 H -0.27 -10.35 7.11 99.48 0.71 -9.64 15 20 H -0.26 -9.77 7.11 99.48 0.71 -9.06 15 21 H 0.07 2.91 8.14 -2.38 -0.02 2.89 15 22 H 0.10 2.81 8.14 -2.39 -0.02 2.79 15 23 H 0.09 2.91 8.11 -2.39 -0.02 2.89 15 24 H 0.41 9.31 9.28 -74.06 -0.69 8.63 15 25 H 0.15 4.23 8.06 -2.91 -0.02 4.21 15 26 H 0.16 3.98 8.06 -2.91 -0.02 3.96 15 27 H 0.13 5.98 5.64 -2.91 -0.02 5.97 15 28 H 0.28 14.53 8.31 -92.70 -0.77 13.76 15 Total: -1.00 -66.33 263.93 5.34 -60.99 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 0.53 Total: 21.68 kcal Atomic # 6 Polarization: -33.11 SS G_CDS: 2.96 Total: -30.16 kcal Atomic # 7 Polarization: -65.25 SS G_CDS: -0.23 Total: -65.48 kcal Atomic # 8 Polarization: -25.19 SS G_CDS: -0.72 Total: -25.91 kcal Atomic # 9 Polarization: -5.08 SS G_CDS: 0.78 Total: -4.30 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -66.33 5.34 -60.99 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062748607.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.999 kcal (2) G-P(sol) polarization free energy of solvation -66.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds