Wall clock time and date at job start Mon Mar 30 2020 21:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86800 * 120.00051 * 2 1 4 4 H 1.48499 * 109.46877 * 270.00131 * 3 2 1 5 5 H 1.48501 * 109.46905 * 29.99291 * 3 2 1 6 6 H 1.48491 * 109.47266 * 149.99925 * 3 2 1 7 7 C 1.38950 * 120.00239 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00236 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00127 * 359.97438 * 7 2 1 10 10 C 1.34769 * 120.00316 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00014 * 0.02562 * 10 9 7 12 12 C 1.50704 * 120.00072 * 180.02562 * 10 9 7 13 13 N 1.46503 * 109.47220 * 179.97438 * 12 10 9 14 14 N 1.28443 * 125.19545 * 270.00249 * 13 12 10 15 15 C 1.30877 * 110.94099 * 179.97438 * 14 13 12 16 16 C 1.39642 * 107.88134 * 359.75825 * 15 14 13 17 17 C 1.36647 * 125.19252 * 89.99712 * 13 12 10 18 18 C 1.47002 * 126.89750 * 359.97438 * 17 13 12 19 19 O 1.21557 * 120.00076 * 179.97438 * 18 17 13 20 20 O 1.34814 * 120.00272 * 359.97438 * 18 17 13 21 21 H 0.96994 * 120.00151 * 0.02562 * 1 2 3 22 22 H 0.97004 * 119.99863 * 0.02562 * 9 7 2 23 23 H 1.09003 * 109.47019 * 60.00067 * 12 10 9 24 24 H 1.09004 * 109.47106 * 299.99666 * 12 10 9 25 25 H 1.07995 * 126.05781 * 179.97438 * 15 14 13 26 26 H 1.08000 * 127.32044 * 180.27029 * 16 15 14 27 27 H 0.96700 * 117.00422 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4454 2.6527 0.6999 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3235 -2.3907 0.0016 10 6 1.9973 -3.5578 0.0026 11 8 3.2102 -3.5578 0.0031 12 6 1.2438 -4.8630 0.0032 13 7 2.1959 -5.9765 0.0037 14 7 2.6770 -6.5396 -1.0456 15 6 3.5017 -7.5033 -0.7230 16 6 3.5636 -7.5659 0.6707 17 6 2.7077 -6.5746 1.1207 18 6 2.4143 -6.2299 2.5193 19 8 2.9434 -6.8492 3.4217 20 8 1.5585 -5.2272 2.8013 21 1 -0.4850 0.8400 -0.0004 22 1 0.3534 -2.3907 0.0016 23 1 0.6175 -4.9213 -0.8870 24 1 0.6168 -4.9202 0.8931 25 1 4.0415 -8.1354 -1.4123 26 1 4.1521 -8.2447 1.2701 27 1 1.3974 -5.0371 3.7357 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070210921.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:00:28 Heat of formation + Delta-G solvation = -44.233063 kcal Electronic energy + Delta-G solvation = -16728.299393 eV Core-core repulsion = 13681.379424 eV Total energy + Delta-G solvation = -3046.919969 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.36611 -39.72876 -38.27302 -36.08078 -34.20769 -32.96413 -31.38690 -30.85973 -27.79150 -24.84383 -24.22797 -21.50613 -20.65259 -19.57734 -18.36227 -17.89004 -17.22931 -16.71916 -15.57030 -15.37478 -14.81450 -14.56766 -14.26110 -14.08421 -13.57655 -13.25722 -13.05053 -12.54357 -11.79245 -11.66727 -11.54925 -11.14967 -10.97724 -10.48618 -10.40585 -10.35476 -9.67194 -9.29243 -9.02953 -8.43772 -8.14525 -6.56021 -3.97665 1.18240 2.52116 2.79579 2.99769 3.08716 3.13148 3.20071 3.26037 3.64529 4.06806 4.66953 4.73234 4.94895 5.11965 5.34668 5.49959 5.57249 5.74197 5.92427 5.99002 6.43655 6.60442 6.85534 7.42413 7.85021 7.86742 8.24215 8.40571 9.00969 9.31832 9.81160 10.60832 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.034950 B = 0.006491 C = 0.006036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.957487 B = 4312.573734 C = 4638.028295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.027 3.973 3 Si 0.933 3.067 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.302 4.302 8 H 0.104 0.896 9 N -0.548 5.548 10 C 0.428 3.572 11 O -0.580 6.580 12 C 0.101 3.899 13 N -0.228 5.228 14 N -0.252 5.252 15 C -0.014 4.014 16 C -0.153 4.153 17 C -0.026 4.026 18 C 0.566 3.434 19 O -0.509 6.509 20 O -0.507 6.507 21 H 0.274 0.726 22 H 0.395 0.605 23 H 0.118 0.882 24 H 0.127 0.873 25 H 0.188 0.812 26 H 0.164 0.836 27 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.040 -10.433 2.247 10.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.176 4.176 3 Si 0.759 3.241 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.431 4.431 8 H 0.122 0.878 9 N -0.184 5.184 10 C 0.212 3.788 11 O -0.465 6.465 12 C -0.024 4.024 13 N -0.018 5.018 14 N -0.087 5.087 15 C -0.188 4.188 16 C -0.182 4.182 17 C -0.151 4.151 18 C 0.409 3.591 19 O -0.397 6.397 20 O -0.319 6.319 21 H 0.084 0.916 22 H 0.228 0.772 23 H 0.136 0.864 24 H 0.145 0.855 25 H 0.205 0.795 26 H 0.182 0.818 27 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -0.729 -9.838 1.215 9.939 hybrid contribution 0.061 0.682 1.260 1.434 sum -0.668 -9.156 2.475 9.508 Atomic orbital electron populations 1.69598 1.05972 1.28546 1.49512 1.25291 0.95669 0.99837 0.96756 0.85816 0.79264 0.80447 0.78562 1.20223 1.20752 1.19321 1.19712 0.93438 0.81836 1.48142 0.87786 1.41714 1.09283 1.04188 1.63170 1.19598 0.88468 0.84512 0.86259 1.90602 1.13375 1.86551 1.55961 1.22001 0.89816 0.83988 1.06551 1.45331 1.31058 1.23496 1.01906 1.73180 1.12483 1.09104 1.13913 1.23530 1.01544 0.99222 0.94514 1.22085 1.00790 1.00066 0.95249 1.20472 1.06629 1.02061 0.85933 1.19356 0.75592 0.76668 0.87483 1.90910 1.50083 1.51921 1.46751 1.84643 1.60232 1.50940 1.36056 0.91584 0.77160 0.86425 0.85503 0.79456 0.81849 0.72302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.26 13.05 55.50 0.72 -22.54 15 2 C 0.03 0.70 5.50 -17.47 -0.10 0.60 15 3 Si 0.93 20.42 29.55 -169.99 -5.02 15.40 15 4 H -0.28 -6.01 7.11 56.52 0.40 -5.61 15 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 15 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 15 7 C -0.30 -8.14 9.68 -14.93 -0.14 -8.29 15 8 H 0.10 2.99 7.16 -52.49 -0.38 2.61 15 9 N -0.55 -13.23 5.29 -10.96 -0.06 -13.29 15 10 C 0.43 9.86 7.85 -10.99 -0.09 9.77 15 11 O -0.58 -15.92 16.01 5.55 0.09 -15.83 15 12 C 0.10 1.75 6.26 -5.19 -0.03 1.72 15 13 N -0.23 -4.15 2.84 -58.32 -0.17 -4.32 15 14 N -0.25 -4.52 11.90 30.58 0.36 -4.16 15 15 C -0.01 -0.20 12.03 -17.43 -0.21 -0.41 15 16 C -0.15 -2.30 10.85 -38.96 -0.42 -2.73 15 17 C -0.03 -0.44 6.96 -82.08 -0.57 -1.01 15 18 C 0.57 9.26 8.31 34.28 0.28 9.55 15 19 O -0.51 -8.94 17.71 -19.31 -0.34 -9.28 15 20 O -0.51 -7.02 10.90 -40.80 -0.44 -7.47 15 21 H 0.27 6.74 8.31 -40.82 -0.34 6.40 15 22 H 0.39 8.89 7.90 -40.82 -0.32 8.56 15 23 H 0.12 1.76 8.14 -51.93 -0.42 1.34 15 24 H 0.13 1.88 6.15 -51.93 -0.32 1.56 15 25 H 0.19 1.96 8.06 -52.49 -0.42 1.54 15 26 H 0.16 2.02 8.06 -52.49 -0.42 1.60 15 27 H 0.42 3.66 9.11 45.56 0.42 4.08 15 LS Contribution 258.87 15.07 3.90 3.90 Total: -1.00 -34.21 258.87 -3.24 -37.45 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -1.01 Total: 10.93 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: -1.28 Total: 9.20 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 0.86 Total: -44.30 kcal Atomic # 8 Polarization: -31.88 SS G_CDS: -0.70 Total: -32.58 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -34.21 -3.24 -37.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070210921.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.784 kcal (2) G-P(sol) polarization free energy of solvation -34.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds