Wall clock time and date at job start Mon Mar 30 2020 20:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36931 * 120.00199 * 2 1 4 4 H 1.08001 * 119.99915 * 203.19166 * 3 2 1 5 5 C 1.38814 * 119.99857 * 23.18319 * 3 2 1 6 6 N 1.31619 * 120.00347 * 13.72036 * 5 3 2 7 7 Si 1.86807 * 119.99740 * 193.72201 * 5 3 2 8 8 H 1.48494 * 109.47307 * 359.97438 * 7 5 3 9 9 H 1.48496 * 109.47044 * 120.00145 * 7 5 3 10 10 H 1.48507 * 109.46795 * 240.00004 * 7 5 3 11 11 C 1.46505 * 119.99853 * 179.97438 * 2 1 3 12 12 C 1.53005 * 109.46648 * 90.00163 * 11 2 1 13 13 H 1.09006 * 109.46830 * 59.99986 * 12 11 2 14 14 O 1.42899 * 109.47356 * 300.00147 * 12 11 2 15 15 C 1.52997 * 109.47095 * 179.97438 * 12 11 2 16 16 C 1.52994 * 109.47071 * 185.00511 * 15 12 11 17 17 C 1.50707 * 109.47248 * 180.02562 * 16 15 12 18 18 C 1.39871 * 126.03489 * 270.00052 * 17 16 15 19 19 N 1.30843 * 108.20004 * 179.73994 * 18 17 16 20 20 N 1.40080 * 108.20156 * 0.39762 * 19 18 17 21 21 H 0.97007 * 126.03197 * 179.85615 * 20 19 18 22 22 C 1.34952 * 107.92962 * 359.59522 * 20 19 18 23 23 H 1.09005 * 109.47470 * 275.16274 * 1 2 3 24 24 H 1.08997 * 109.47088 * 35.16114 * 1 2 3 25 25 H 1.09006 * 109.47313 * 155.16354 * 1 2 3 26 26 H 0.96998 * 119.99954 * 179.97438 * 6 5 3 27 27 H 1.08998 * 109.47202 * 330.00563 * 11 2 1 28 28 H 1.08993 * 109.47324 * 209.99862 * 11 2 1 29 29 H 0.96701 * 113.99676 * 300.00047 * 14 12 11 30 30 H 1.08994 * 109.47357 * 65.00127 * 15 12 11 31 31 H 1.09003 * 109.46914 * 304.99944 * 15 12 11 32 32 H 1.09002 * 109.47795 * 60.00042 * 16 15 12 33 33 H 1.09007 * 109.47268 * 299.99499 * 16 15 12 34 34 H 1.08001 * 125.90402 * 359.97438 * 18 17 16 35 35 H 1.07998 * 126.12508 * 180.25780 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1642 1.2236 -0.3683 5 6 1.5397 2.3395 0.4733 6 7 0.4224 2.2572 1.1641 7 14 2.3046 4.0087 0.1296 8 1 3.5489 3.8298 -0.6608 9 1 1.3460 4.8439 -0.6377 10 1 2.6272 4.6794 1.4147 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7110 -1.4418 13 1 3.0416 -0.9515 -1.9559 14 8 1.2039 -1.8821 -2.1154 15 6 3.2180 -3.0357 -1.4414 16 6 3.5819 -3.4149 -2.8782 17 6 4.3354 -4.7201 -2.8778 18 6 5.7226 -4.8693 -2.7791 19 7 5.9992 -6.1478 -2.8081 20 7 4.7956 -6.8531 -2.9355 21 1 4.7017 -7.8174 -2.9842 22 6 3.7895 -5.9545 -2.9727 23 1 -0.3634 0.0925 1.0235 24 1 -0.3633 0.8401 -0.5918 25 1 -0.3634 -0.9327 -0.4317 26 1 -0.0036 3.0634 1.4951 27 1 1.6084 -2.0282 0.5146 28 1 3.1499 -1.1383 0.5143 29 1 0.6267 -2.5446 -1.7116 30 1 2.5935 -3.8161 -1.0067 31 1 4.1287 -2.9288 -0.8521 32 1 4.2065 -2.6345 -3.3130 33 1 2.6711 -3.5218 -3.4676 34 1 6.4411 -4.0678 -2.6902 35 1 2.7372 -6.1803 -3.0620 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259399591.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:59:14 Heat of formation + Delta-G solvation = 11.259627 kcal Electronic energy + Delta-G solvation = -16790.568396 eV Core-core repulsion = 14017.720960 eV Total energy + Delta-G solvation = -2772.847436 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.02134 -39.06947 -36.61764 -34.58186 -33.19360 -32.20106 -30.91030 -28.45346 -27.75930 -25.16982 -23.01210 -22.67633 -22.04391 -20.76906 -18.73796 -18.54327 -17.10402 -16.67695 -16.50120 -15.61963 -15.39851 -15.31689 -15.22505 -14.92201 -14.25360 -13.89172 -13.36049 -13.29003 -13.08648 -12.86455 -12.74792 -12.49167 -12.13847 -11.92257 -11.85141 -11.80938 -11.54338 -11.34372 -10.93505 -10.55207 -10.48488 -9.33173 -8.62744 -7.77402 -5.26266 1.03393 1.46708 1.48362 1.58687 1.88374 2.14137 2.53748 3.33354 3.63411 3.88665 3.94452 4.12465 4.21104 4.39849 4.44657 4.56573 4.75155 4.82242 4.90990 4.96889 5.03071 5.04717 5.15402 5.31696 5.43810 5.48887 5.61060 5.66417 5.75560 5.77431 6.37384 6.51058 6.76987 7.13755 7.20354 7.94396 8.37325 9.24197 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.044842 B = 0.004460 C = 0.004216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.260087 B = 6276.835522 C = 6639.713120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.185 3.815 2 N -0.614 5.614 3 C -0.259 4.259 4 H 0.068 0.932 5 C -0.057 4.057 6 N -0.940 5.940 7 Si 0.965 3.035 8 H -0.266 1.266 9 H -0.293 1.293 10 H -0.291 1.291 11 C 0.117 3.883 12 C 0.099 3.901 13 H 0.067 0.933 14 O -0.568 6.568 15 C -0.126 4.126 16 C -0.028 4.028 17 C -0.248 4.248 18 C 0.042 3.958 19 N -0.336 5.336 20 N -0.475 5.475 21 H 0.450 0.550 22 C 0.069 3.931 23 H -0.002 1.002 24 H 0.003 0.997 25 H 0.038 0.962 26 H 0.246 0.754 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.376 0.624 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.191 0.809 35 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.174 -17.765 -7.932 20.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.337 5.337 3 C -0.390 4.390 4 H 0.086 0.914 5 C -0.251 4.251 6 N -0.588 5.588 7 Si 0.794 3.206 8 H -0.190 1.190 9 H -0.220 1.220 10 H -0.218 1.218 11 C -0.009 4.009 12 C 0.037 3.963 13 H 0.085 0.915 14 O -0.374 6.374 15 C -0.165 4.165 16 C -0.066 4.066 17 C -0.260 4.260 18 C -0.143 4.143 19 N -0.159 5.159 20 N -0.184 5.184 21 H 0.296 0.704 22 C -0.080 4.080 23 H 0.016 0.984 24 H 0.022 0.978 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.224 0.776 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.208 0.792 35 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 6.271 -18.065 -8.209 20.810 hybrid contribution -0.660 0.987 0.459 1.273 sum 5.611 -17.078 -7.750 19.576 Atomic orbital electron populations 1.20444 0.82820 0.96028 0.96671 1.43998 1.02107 1.01545 1.86060 1.19556 0.98463 0.87158 1.33778 0.91430 1.25769 0.98818 1.01837 0.98722 1.70244 1.21589 1.27382 1.39572 0.85223 0.77996 0.80234 0.77146 1.19026 1.21987 1.21811 1.21660 0.96135 0.87375 0.95700 1.22456 0.84515 0.95835 0.93467 0.91470 1.86565 1.29891 1.64321 1.56589 1.22112 1.00468 0.96322 0.97556 1.19695 0.98830 0.91949 0.96161 1.20337 0.93415 0.96028 1.16187 1.24166 0.96745 0.94271 0.99162 1.77244 1.06429 1.06362 1.25856 1.46334 1.03670 1.09949 1.58478 0.70351 1.22919 0.96213 0.89028 0.99792 0.98424 0.97764 0.94308 0.94447 0.92767 0.93385 0.77635 0.90712 0.91542 0.92177 0.90740 0.79197 0.77477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.38 8.66 127.77 1.11 10.48 16 2 N -0.61 -31.20 2.84 -726.92 -2.07 -33.27 16 3 C -0.26 -14.58 9.65 84.03 0.81 -13.77 16 4 H 0.07 3.69 7.87 -2.91 -0.02 3.67 16 5 C -0.06 -3.28 5.09 84.86 0.43 -2.85 16 6 N -0.94 -57.30 10.76 21.65 0.23 -57.07 16 7 Si 0.97 46.25 29.58 68.60 2.03 48.27 16 8 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 9 H -0.29 -14.06 7.11 99.48 0.71 -13.36 16 10 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 11 C 0.12 4.56 5.34 86.38 0.46 5.02 16 12 C 0.10 3.17 3.24 30.60 0.10 3.27 16 13 H 0.07 2.52 8.14 -2.38 -0.02 2.50 16 14 O -0.57 -18.28 11.68 -148.98 -1.74 -20.02 16 15 C -0.13 -2.94 4.88 30.59 0.15 -2.79 16 16 C -0.03 -0.59 5.60 29.85 0.17 -0.42 16 17 C -0.25 -4.95 5.35 -20.14 -0.11 -5.06 16 18 C 0.04 0.92 11.96 85.24 1.02 1.94 16 19 N -0.34 -7.69 12.70 -57.02 -0.72 -8.41 16 20 N -0.47 -7.66 7.36 -57.59 -0.42 -8.09 16 21 H 0.45 4.17 8.96 -213.32 -1.91 2.26 16 22 C 0.07 1.05 11.90 83.54 0.99 2.04 16 23 H 0.00 -0.14 7.33 -2.38 -0.02 -0.16 16 24 H 0.00 0.20 7.37 -2.39 -0.02 0.18 16 25 H 0.04 1.62 7.00 -2.38 -0.02 1.60 16 26 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 27 H 0.05 1.89 8.07 -2.39 -0.02 1.87 16 28 H 0.05 1.89 8.04 -2.39 -0.02 1.87 16 29 H 0.38 9.17 8.79 -74.06 -0.65 8.52 16 30 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.07 1.56 7.82 -2.38 -0.02 1.54 16 34 H 0.19 3.46 8.06 -2.91 -0.02 3.44 16 35 H 0.21 1.63 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -72.41 296.16 0.97 -71.44 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -1.47 Total: 9.26 kcal Atomic # 6 Polarization: -7.26 SS G_CDS: 5.13 Total: -2.13 kcal Atomic # 7 Polarization: -103.85 SS G_CDS: -2.98 Total: -106.83 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -1.74 Total: -20.02 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.27 kcal Total: -72.41 0.97 -71.44 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259399591.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.703 kcal (2) G-P(sol) polarization free energy of solvation -72.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds