Wall clock time and date at job start Mon Mar 30 2020 20:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30502 * 125.65096 * 2 1 4 4 C 1.34128 * 109.25523 * 179.77397 * 3 2 1 5 5 C 1.50698 * 125.98872 * 180.25045 * 4 3 2 6 6 C 1.34670 * 108.01905 * 0.40560 * 4 3 2 7 7 C 1.50700 * 126.58758 * 179.87336 * 6 4 3 8 8 H 1.09002 * 109.47317 * 324.70958 * 7 6 4 9 9 O 1.42901 * 109.47021 * 204.70535 * 7 6 4 10 10 C 1.52998 * 109.47089 * 84.70847 * 7 6 4 11 11 N 1.46505 * 109.47095 * 184.99830 * 10 7 6 12 12 C 1.46498 * 120.00175 * 269.99892 * 11 10 7 13 13 C 1.36941 * 119.99939 * 90.00330 * 11 10 7 14 14 H 1.07996 * 119.99788 * 22.67701 * 13 11 10 15 15 C 1.38805 * 119.99751 * 202.67981 * 13 11 10 16 16 N 1.31624 * 120.00462 * 11.49863 * 15 13 11 17 17 Si 1.86799 * 119.99930 * 191.49863 * 15 13 11 18 18 H 1.48494 * 109.47303 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47414 * 120.00142 * 17 15 13 20 20 H 1.48506 * 109.46827 * 239.99981 * 17 15 13 21 21 N 1.35043 * 125.65313 * 180.02562 * 2 1 3 22 22 H 0.97008 * 126.39279 * 359.97438 * 21 2 1 23 23 H 1.08995 * 109.47261 * 269.97293 * 1 2 3 24 24 H 1.09007 * 109.46829 * 29.97357 * 1 2 3 25 25 H 1.09003 * 109.46760 * 149.96704 * 1 2 3 26 26 H 1.08996 * 109.47190 * 270.17818 * 5 4 3 27 27 H 1.08998 * 109.47504 * 30.18261 * 5 4 3 28 28 H 1.09004 * 109.46956 * 150.17917 * 5 4 3 29 29 H 0.96691 * 114.00000 * 300.00395 * 9 7 6 30 30 H 1.09000 * 109.47231 * 304.99993 * 10 7 6 31 31 H 1.09003 * 109.47461 * 65.00322 * 10 7 6 32 32 H 1.09001 * 109.47044 * 93.92574 * 12 11 10 33 33 H 1.08991 * 109.47340 * 213.93045 * 12 11 10 34 34 H 1.09003 * 109.46852 * 333.93057 * 12 11 10 35 35 H 0.96998 * 120.00649 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5544 0.6818 0.0050 5 6 4.7481 1.6016 0.0120 6 6 3.5926 -0.6643 -0.0009 7 6 4.8276 -1.5279 -0.0010 8 1 5.6078 -1.0461 -0.5902 9 8 4.5182 -2.8014 -0.5707 10 6 5.3174 -1.7175 1.4360 11 7 6.5828 -2.4558 1.4272 12 6 6.5776 -3.9192 1.4959 13 6 7.7705 -1.7780 1.3548 14 1 7.8226 -0.7452 1.6659 15 6 8.9073 -2.4186 0.8815 16 7 8.8053 -3.5920 0.2940 17 14 10.5823 -1.6153 1.0783 18 1 10.4268 -0.3086 1.7662 19 1 11.4631 -2.4981 1.8846 20 1 11.1885 -1.4004 -0.2603 21 7 2.2941 -1.0973 -0.0005 22 1 1.9951 -2.0201 -0.0006 23 1 -0.3633 -0.0005 1.0276 24 1 -0.3633 0.8903 -0.5135 25 1 -0.3633 -0.8897 -0.5144 26 1 5.0385 1.8279 -1.0139 27 1 4.4914 2.5261 0.5293 28 1 5.5778 1.1162 0.5259 29 1 3.8300 -3.2877 -0.0964 30 1 5.4687 -0.7428 1.8999 31 1 4.5738 -2.2780 2.0025 32 1 6.6115 -4.3304 0.4870 33 1 7.4480 -4.2597 2.0565 34 1 5.6691 -4.2562 1.9952 35 1 9.5997 -4.0398 -0.0364 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259484592.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:59:17 Heat of formation + Delta-G solvation = 21.165032 kcal Electronic energy + Delta-G solvation = -17501.999819 eV Core-core repulsion = 14729.581913 eV Total energy + Delta-G solvation = -2772.417906 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.96586 -37.22864 -34.82529 -33.16811 -31.99313 -31.19709 -29.27364 -28.15087 -25.87193 -25.22678 -22.70173 -20.86214 -20.60154 -19.59539 -17.66262 -16.64983 -15.71814 -15.23324 -14.78919 -14.60493 -14.12192 -13.53159 -13.41931 -13.06994 -12.84226 -12.71110 -12.33582 -12.23001 -11.90846 -11.75778 -11.23701 -11.04518 -10.83858 -10.59686 -10.34641 -10.21100 -9.97614 -9.89462 -9.61405 -9.48754 -8.54529 -7.84448 -6.73125 -5.72692 -3.19135 2.21076 3.20487 3.26220 3.38341 3.45567 3.47451 4.47492 4.51058 4.90743 5.01755 5.12647 5.37435 5.41449 5.44167 5.58184 5.75290 5.76644 5.84107 5.99458 6.07447 6.20880 6.28105 6.33885 6.56017 6.74612 6.79359 7.02443 7.39456 7.55406 7.77203 7.84148 8.03303 8.30406 8.38291 9.22419 9.84717 10.33652 11.31726 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.037043 B = 0.006398 C = 0.005731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.686960 B = 4375.400418 C = 4884.836756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.191 3.809 3 N -0.487 5.487 4 C 0.001 3.999 5 C -0.069 4.069 6 C -0.034 4.034 7 C 0.156 3.844 8 H 0.120 0.880 9 O -0.542 6.542 10 C 0.132 3.868 11 N -0.591 5.591 12 C 0.167 3.833 13 C -0.261 4.261 14 H 0.070 0.930 15 C 0.005 3.995 16 N -0.902 5.902 17 Si 0.904 3.096 18 H -0.277 1.277 19 H -0.290 1.290 20 H -0.290 1.290 21 N -0.561 5.561 22 H 0.414 0.586 23 H 0.076 0.924 24 H 0.087 0.913 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.353 0.647 30 H 0.057 0.943 31 H 0.036 0.964 32 H 0.035 0.965 33 H 0.043 0.957 34 H -0.009 1.009 35 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.845 3.582 0.416 14.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.072 4.072 3 N -0.209 5.209 4 C -0.128 4.128 5 C -0.127 4.127 6 C -0.151 4.151 7 C 0.092 3.908 8 H 0.138 0.862 9 O -0.343 6.343 10 C 0.003 3.997 11 N -0.312 5.312 12 C 0.022 3.978 13 C -0.390 4.390 14 H 0.088 0.912 15 C -0.194 4.194 16 N -0.546 5.546 17 Si 0.734 3.266 18 H -0.202 1.202 19 H -0.216 1.216 20 H -0.217 1.217 21 N -0.166 5.166 22 H 0.251 0.749 23 H 0.095 0.905 24 H 0.106 0.894 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.197 0.803 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.009 0.991 35 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -13.451 4.487 -0.058 14.180 hybrid contribution 0.579 -1.083 0.304 1.265 sum -12.872 3.405 0.247 13.317 Atomic orbital electron populations 1.20107 0.85189 1.03679 1.03177 1.23092 0.95281 0.81856 1.06972 1.70061 1.01838 1.28668 1.20310 1.20450 0.92849 0.91191 1.08286 1.20075 0.92959 0.97518 1.02179 1.22434 0.86250 0.96392 1.09994 1.21734 0.88742 0.80583 0.99710 0.86243 1.86756 1.60433 1.31246 1.55886 1.21501 0.89031 0.96954 0.92231 1.43920 1.00175 1.02351 1.84737 1.20804 0.95315 0.82428 0.99208 1.19263 0.85951 0.96853 1.36956 0.91180 1.25062 0.98706 0.97416 0.98191 1.70094 1.27718 1.15805 1.40981 0.86198 0.84326 0.78737 0.77375 1.20197 1.21635 1.21655 1.42948 1.06305 1.09642 1.57698 0.74917 0.90488 0.89440 0.91117 0.91650 0.91566 0.90514 0.80302 0.92463 0.94523 0.94623 0.93872 0.99066 0.93772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.56 10.51 36.01 0.38 -0.18 16 2 C 0.19 2.65 8.15 -155.41 -1.27 1.38 16 3 N -0.49 -8.28 11.25 -7.07 -0.08 -8.36 16 4 C 0.00 0.01 7.09 -82.85 -0.59 -0.58 16 5 C -0.07 -1.08 10.14 36.00 0.37 -0.71 16 6 C -0.03 -0.57 6.17 -81.61 -0.50 -1.07 16 7 C 0.16 2.93 3.24 -27.88 -0.09 2.84 16 8 H 0.12 2.59 8.04 -51.93 -0.42 2.17 16 9 O -0.54 -10.17 12.83 -35.23 -0.45 -10.63 16 10 C 0.13 2.65 5.35 -4.04 -0.02 2.62 16 11 N -0.59 -14.59 2.89 -181.12 -0.52 -15.12 16 12 C 0.17 4.09 8.61 59.85 0.52 4.61 16 13 C -0.26 -7.04 9.67 -15.06 -0.15 -7.19 16 14 H 0.07 1.84 7.85 -52.49 -0.41 1.43 16 15 C 0.01 0.14 5.12 -17.43 -0.09 0.05 16 16 N -0.90 -26.27 10.62 55.49 0.59 -25.68 16 17 Si 0.90 21.69 29.57 -169.99 -5.03 16.66 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 N -0.56 -7.59 6.01 -6.54 -0.04 -7.63 16 22 H 0.41 4.23 8.38 -40.82 -0.34 3.89 16 23 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.09 0.75 8.14 -51.92 -0.42 0.33 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.08 1.22 7.57 -51.93 -0.39 0.83 16 29 H 0.35 5.07 8.40 45.56 0.38 5.45 16 30 H 0.06 1.15 7.71 -51.93 -0.40 0.75 16 31 H 0.04 0.67 7.87 -51.93 -0.41 0.26 16 32 H 0.04 0.96 7.43 -51.93 -0.39 0.57 16 33 H 0.04 1.14 7.19 -51.93 -0.37 0.77 16 34 H -0.01 -0.20 7.85 -51.93 -0.41 -0.60 16 35 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 295.83 15.07 4.46 4.46 Total: -1.00 -32.95 295.83 -6.92 -39.88 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -4.41 Total: 4.63 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -1.45 Total: 1.78 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: -0.05 Total: -56.78 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: -0.45 Total: -10.63 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.66 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.95 -6.92 -39.88 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259484592.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.041 kcal (2) G-P(sol) polarization free energy of solvation -32.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds