Wall clock time and date at job start Mon Mar 30 2020 20:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30502 * 125.65096 * 2 1 4 4 C 1.34128 * 109.25523 * 179.77397 * 3 2 1 5 5 C 1.50698 * 125.98872 * 180.25045 * 4 3 2 6 6 C 1.34670 * 108.01905 * 0.40560 * 4 3 2 7 7 C 1.50700 * 126.58758 * 179.87336 * 6 4 3 8 8 H 1.09002 * 109.47317 * 324.70958 * 7 6 4 9 9 O 1.42901 * 109.47021 * 204.70535 * 7 6 4 10 10 C 1.52998 * 109.47089 * 84.70847 * 7 6 4 11 11 N 1.46505 * 109.47095 * 184.99830 * 10 7 6 12 12 C 1.46498 * 120.00175 * 269.99892 * 11 10 7 13 13 C 1.36941 * 119.99939 * 90.00330 * 11 10 7 14 14 H 1.07996 * 119.99788 * 22.67701 * 13 11 10 15 15 C 1.38805 * 119.99751 * 202.67981 * 13 11 10 16 16 N 1.31624 * 120.00462 * 11.49863 * 15 13 11 17 17 Si 1.86799 * 119.99930 * 191.49863 * 15 13 11 18 18 H 1.48494 * 109.47303 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47414 * 120.00142 * 17 15 13 20 20 H 1.48506 * 109.46827 * 239.99981 * 17 15 13 21 21 N 1.35043 * 125.65313 * 180.02562 * 2 1 3 22 22 H 0.97008 * 126.39279 * 359.97438 * 21 2 1 23 23 H 1.08995 * 109.47261 * 269.97293 * 1 2 3 24 24 H 1.09007 * 109.46829 * 29.97357 * 1 2 3 25 25 H 1.09003 * 109.46760 * 149.96704 * 1 2 3 26 26 H 1.08996 * 109.47190 * 270.17818 * 5 4 3 27 27 H 1.08998 * 109.47504 * 30.18261 * 5 4 3 28 28 H 1.09004 * 109.46956 * 150.17917 * 5 4 3 29 29 H 0.96691 * 114.00000 * 300.00395 * 9 7 6 30 30 H 1.09000 * 109.47231 * 304.99993 * 10 7 6 31 31 H 1.09003 * 109.47461 * 65.00322 * 10 7 6 32 32 H 1.09001 * 109.47044 * 93.92574 * 12 11 10 33 33 H 1.08991 * 109.47340 * 213.93045 * 12 11 10 34 34 H 1.09003 * 109.46852 * 333.93057 * 12 11 10 35 35 H 0.96998 * 120.00649 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5544 0.6818 0.0050 5 6 4.7481 1.6016 0.0120 6 6 3.5926 -0.6643 -0.0009 7 6 4.8276 -1.5279 -0.0010 8 1 5.6078 -1.0461 -0.5902 9 8 4.5182 -2.8014 -0.5707 10 6 5.3174 -1.7175 1.4360 11 7 6.5828 -2.4558 1.4272 12 6 6.5776 -3.9192 1.4959 13 6 7.7705 -1.7780 1.3548 14 1 7.8226 -0.7452 1.6659 15 6 8.9073 -2.4186 0.8815 16 7 8.8053 -3.5920 0.2940 17 14 10.5823 -1.6153 1.0783 18 1 10.4268 -0.3086 1.7662 19 1 11.4631 -2.4981 1.8846 20 1 11.1885 -1.4004 -0.2603 21 7 2.2941 -1.0973 -0.0005 22 1 1.9951 -2.0201 -0.0006 23 1 -0.3633 -0.0005 1.0276 24 1 -0.3633 0.8903 -0.5135 25 1 -0.3633 -0.8897 -0.5144 26 1 5.0385 1.8279 -1.0139 27 1 4.4914 2.5261 0.5293 28 1 5.5778 1.1162 0.5259 29 1 3.8300 -3.2877 -0.0964 30 1 5.4687 -0.7428 1.8999 31 1 4.5738 -2.2780 2.0025 32 1 6.6115 -4.3304 0.4870 33 1 7.4480 -4.2597 2.0565 34 1 5.6691 -4.2562 1.9952 35 1 9.5997 -4.0398 -0.0364 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259484592.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 20:59:16 Heat of formation + Delta-G solvation = -2.997443 kcal Electronic energy + Delta-G solvation = -17503.047583 eV Core-core repulsion = 14729.581913 eV Total energy + Delta-G solvation = -2773.465669 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.15387 -38.81598 -36.65012 -34.35719 -33.39500 -32.90801 -30.41761 -29.59152 -27.87195 -26.70725 -24.24932 -22.53603 -21.84437 -20.85108 -19.07803 -18.49510 -17.24261 -16.47861 -16.38577 -16.28034 -15.70014 -15.17230 -14.87126 -14.38186 -14.03663 -13.91149 -13.70675 -13.29635 -13.25324 -13.09077 -12.96410 -12.80796 -12.59468 -12.31778 -12.16313 -12.02707 -11.84480 -11.56964 -10.87447 -10.80103 -10.59345 -9.14474 -8.68636 -7.81117 -5.29306 1.01193 1.47512 1.49050 1.59155 2.04700 2.12715 2.52334 3.32142 3.45781 3.52017 3.63468 4.07496 4.14110 4.26598 4.31794 4.45835 4.62472 4.77500 4.81558 4.84300 4.84711 4.92450 5.04714 5.14356 5.18626 5.34486 5.35306 5.66161 5.78725 5.80277 6.33610 6.54123 6.76565 7.12463 7.16474 7.87026 8.30377 9.22163 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.037043 B = 0.006398 C = 0.005731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.686960 B = 4375.400418 C = 4884.836756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.207 3.793 3 N -0.524 5.524 4 C -0.015 4.015 5 C -0.068 4.068 6 C -0.049 4.049 7 C 0.177 3.823 8 H 0.084 0.916 9 O -0.559 6.559 10 C 0.134 3.866 11 N -0.607 5.607 12 C 0.183 3.817 13 C -0.264 4.264 14 H 0.074 0.926 15 C -0.050 4.050 16 N -0.935 5.935 17 Si 0.965 3.035 18 H -0.264 1.264 19 H -0.292 1.292 20 H -0.294 1.294 21 N -0.550 5.550 22 H 0.430 0.570 23 H 0.095 0.905 24 H 0.091 0.909 25 H 0.099 0.901 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.373 0.627 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.007 0.993 33 H 0.014 0.986 34 H 0.028 0.972 35 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.902 4.068 0.928 16.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.057 4.057 3 N -0.246 5.246 4 C -0.143 4.143 5 C -0.126 4.126 6 C -0.166 4.166 7 C 0.114 3.886 8 H 0.102 0.898 9 O -0.363 6.363 10 C 0.007 3.993 11 N -0.329 5.329 12 C 0.038 3.962 13 C -0.395 4.395 14 H 0.092 0.908 15 C -0.246 4.246 16 N -0.582 5.582 17 Si 0.794 3.206 18 H -0.188 1.188 19 H -0.219 1.219 20 H -0.221 1.221 21 N -0.156 5.156 22 H 0.270 0.730 23 H 0.114 0.886 24 H 0.110 0.890 25 H 0.117 0.883 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.221 0.779 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.025 0.975 33 H 0.032 0.968 34 H 0.046 0.954 35 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -15.554 4.975 0.471 16.337 hybrid contribution 1.031 -1.206 0.155 1.594 sum -14.523 3.769 0.626 15.017 Atomic orbital electron populations 1.20361 0.81463 1.05341 1.04895 1.24062 0.97103 0.81048 1.03475 1.70093 1.01819 1.30257 1.22441 1.20748 0.93610 0.91742 1.08172 1.20062 0.92420 0.97705 1.02387 1.21871 0.86758 0.95805 1.12167 1.21039 0.89109 0.80862 0.97590 0.89827 1.86709 1.61546 1.31476 1.56612 1.21573 0.87700 0.96696 0.93337 1.44094 1.01214 1.02541 1.85071 1.20512 0.95705 0.82563 0.97419 1.19595 0.87134 0.97008 1.35721 0.90846 1.25786 1.01986 0.98134 0.98644 1.70261 1.28052 1.17252 1.42610 0.85229 0.80206 0.78296 0.76901 1.18788 1.21866 1.22112 1.42872 1.05038 1.10697 1.57003 0.72953 0.88600 0.88976 0.88275 0.91327 0.90628 0.91494 0.77949 0.92550 0.92144 0.97502 0.96766 0.95372 0.94424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.85 10.51 71.24 0.75 -0.10 16 2 C 0.21 5.15 8.15 138.13 1.13 6.27 16 3 N -0.52 -16.90 11.25 -176.28 -1.98 -18.89 16 4 C -0.01 -0.49 7.09 41.39 0.29 -0.20 16 5 C -0.07 -2.11 10.14 71.24 0.72 -1.39 16 6 C -0.05 -1.57 6.17 40.95 0.25 -1.32 16 7 C 0.18 6.59 3.24 29.85 0.10 6.69 16 8 H 0.08 3.72 8.04 -2.39 -0.02 3.70 16 9 O -0.56 -20.46 12.83 -148.98 -1.91 -22.37 16 10 C 0.13 5.26 5.35 86.38 0.46 5.72 16 11 N -0.61 -29.93 2.89 -726.94 -2.10 -32.03 16 12 C 0.18 8.97 8.61 127.77 1.10 10.07 16 13 C -0.26 -14.37 9.67 84.03 0.81 -13.56 16 14 H 0.07 3.86 7.85 -2.91 -0.02 3.83 16 15 C -0.05 -2.82 5.12 84.86 0.43 -2.38 16 16 N -0.94 -55.82 10.62 21.65 0.23 -55.59 16 17 Si 0.97 45.16 29.57 68.60 2.03 47.19 16 18 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 19 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 20 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 21 N -0.55 -13.39 6.01 -174.61 -1.05 -14.44 16 22 H 0.43 7.34 8.38 -92.70 -0.78 6.56 16 23 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 25 H 0.10 0.83 8.14 -2.39 -0.02 0.82 16 26 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.07 2.16 7.57 -2.38 -0.02 2.14 16 29 H 0.37 9.92 8.40 -74.06 -0.62 9.30 16 30 H 0.06 2.22 7.71 -2.39 -0.02 2.20 16 31 H 0.06 2.07 7.87 -2.39 -0.02 2.05 16 32 H 0.01 0.36 7.43 -2.39 -0.02 0.35 16 33 H 0.01 0.74 7.19 -2.39 -0.02 0.72 16 34 H 0.03 1.14 7.85 -2.39 -0.02 1.12 16 35 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -71.56 295.83 0.97 -70.59 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -0.30 Total: 15.73 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 6.05 Total: 9.80 kcal Atomic # 7 Polarization: -116.04 SS G_CDS: -4.90 Total: -120.94 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: -1.91 Total: -22.37 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -71.56 0.97 -70.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259484592.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.591 kcal (2) G-P(sol) polarization free energy of solvation -71.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds