Wall clock time and date at job start Mon Mar 30 2020 21:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34636 * 116.99799 * 2 1 4 4 O 1.21514 * 120.00624 * 359.97438 * 3 2 1 5 5 N 1.34783 * 119.99945 * 179.97438 * 3 2 1 6 6 C 1.47573 * 134.49122 * 179.97438 * 5 3 2 7 7 C 1.53950 * 86.11878 * 155.36000 * 6 5 3 8 8 C 1.52999 * 113.74585 * 137.95062 * 7 6 5 9 9 H 1.08998 * 109.46881 * 62.86104 * 8 7 6 10 10 C 1.50699 * 109.47036 * 302.86271 * 8 7 6 11 11 H 1.08004 * 120.00276 * 3.59545 * 10 8 7 12 12 C 1.37876 * 119.99865 * 183.58948 * 10 8 7 13 13 N 1.31516 * 120.00182 * 0.02562 * 12 10 8 14 14 Si 1.86798 * 119.99978 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.47255 * 0.02562 * 14 12 10 16 16 H 1.48497 * 109.47143 * 120.00382 * 14 12 10 17 17 H 1.48502 * 109.47227 * 240.00275 * 14 12 10 18 18 C 1.52997 * 109.46917 * 182.86020 * 8 7 6 19 19 C 1.52998 * 117.49907 * 227.12903 * 18 8 7 20 20 C 1.52992 * 117.50473 * 295.79264 * 18 8 7 21 21 C 1.47812 * 134.45345 * 359.86500 * 5 3 2 22 22 H 1.09003 * 109.47266 * 300.00397 * 1 2 3 23 23 H 1.09000 * 109.47085 * 59.99704 * 1 2 3 24 24 H 1.08998 * 109.46968 * 179.97438 * 1 2 3 25 25 H 1.08998 * 113.77621 * 41.05885 * 6 5 3 26 26 H 1.09001 * 113.77211 * 269.65972 * 6 5 3 27 27 H 1.09000 * 113.73647 * 269.15879 * 7 6 5 28 28 H 0.96998 * 120.00098 * 180.02562 * 13 12 10 29 29 H 1.09003 * 115.54787 * 81.46686 * 18 8 7 30 30 H 1.08999 * 117.49906 * 215.00849 * 19 18 8 31 31 H 1.08997 * 117.50040 * 0.03121 * 19 18 8 32 32 H 1.09002 * 117.49801 * 359.97438 * 20 18 8 33 33 H 1.09005 * 117.50281 * 144.99377 * 20 18 8 34 34 H 1.08995 * 113.76571 * 90.38482 * 21 5 3 35 35 H 1.08994 * 113.83455 * 318.91527 * 21 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4015 2.2188 -0.0005 5 7 3.4092 1.2702 0.0005 6 6 4.3868 2.3756 0.0002 7 6 5.3633 1.3731 0.6416 8 6 6.7827 1.4471 0.0752 9 1 7.2069 2.4289 0.2853 10 6 6.7410 1.2262 -1.4149 11 1 5.7921 1.1085 -1.9171 12 6 7.9143 1.1745 -2.1372 13 7 9.0698 1.3174 -1.5257 14 14 7.8627 0.8999 -3.9842 15 1 6.4510 0.7696 -4.4260 16 1 8.4922 2.0545 -4.6740 17 1 8.6039 -0.3421 -4.3209 18 6 7.6487 0.3673 0.7269 19 6 9.0263 0.7844 1.2459 20 6 7.8978 0.4747 2.2326 21 6 4.4982 0.2708 0.0036 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 4.1143 3.2035 0.6547 26 1 4.6828 2.7002 -0.9974 27 1 5.3400 1.3739 1.7314 28 1 9.8952 1.2814 -2.0339 29 1 7.5522 -0.6322 0.3028 30 1 9.8359 0.0593 1.1632 31 1 9.3153 1.8281 1.1235 32 1 7.4449 1.3149 2.7590 33 1 7.9649 -0.4541 2.7992 34 1 4.8268 -0.0239 -0.9929 35 1 4.3142 -0.5790 0.6609 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260301899.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:00:22 Heat of formation + Delta-G solvation = -34.581264 kcal Electronic energy + Delta-G solvation = -17472.027116 eV Core-core repulsion = 14664.899118 eV Total energy + Delta-G solvation = -2807.127998 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.63348 -40.11487 -37.80261 -37.10852 -34.45934 -32.15629 -29.25560 -27.60235 -27.02482 -25.54627 -22.92056 -22.34430 -21.03416 -20.41603 -18.95532 -18.14790 -17.92356 -17.61686 -16.58645 -16.09778 -15.55520 -15.36178 -15.05146 -14.39287 -14.20528 -14.12667 -13.42893 -13.19288 -13.07443 -12.83606 -12.66566 -12.36220 -12.22409 -12.00714 -11.79391 -11.79188 -11.38262 -11.33423 -11.17269 -10.47703 -10.33012 -10.01330 -9.62444 -7.93477 -6.04438 1.09352 1.43923 1.50773 1.56588 1.73958 2.51666 2.95519 3.32833 3.52288 3.74468 4.25157 4.29844 4.35738 4.36083 4.46456 4.51853 4.60035 4.63633 4.69715 4.74458 4.79196 4.91114 5.06232 5.15125 5.25751 5.34013 5.48727 5.54326 5.67368 5.79742 5.90056 6.09479 6.46418 6.71418 7.04111 7.18456 7.61782 9.09000 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.023047 B = 0.007555 C = 0.006212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.599453 B = 3705.239700 C = 4506.596920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.376 6.376 3 C 0.658 3.342 4 O -0.618 6.618 5 N -0.632 5.632 6 C 0.137 3.863 7 C -0.095 4.095 8 C 0.089 3.911 9 H 0.008 0.992 10 C -0.523 4.523 11 H 0.061 0.939 12 C 0.029 3.971 13 N -0.891 5.891 14 Si 0.931 3.069 15 H -0.273 1.273 16 H -0.291 1.291 17 H -0.288 1.288 18 C -0.097 4.097 19 C -0.139 4.139 20 C -0.197 4.197 21 C 0.122 3.878 22 H 0.062 0.938 23 H 0.057 0.943 24 H 0.138 0.862 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.254 0.746 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.573 -4.064 4.982 10.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.290 6.290 3 C 0.414 3.586 4 O -0.511 6.511 5 N -0.373 5.373 6 C 0.017 3.983 7 C -0.114 4.114 8 C 0.070 3.930 9 H 0.026 0.974 10 C -0.561 4.561 11 H 0.079 0.921 12 C -0.172 4.172 13 N -0.530 5.530 14 Si 0.759 3.241 15 H -0.198 1.198 16 H -0.218 1.218 17 H -0.214 1.214 18 C -0.116 4.116 19 C -0.177 4.177 20 C -0.234 4.234 21 C 0.001 3.999 22 H 0.081 0.919 23 H 0.076 0.924 24 H 0.156 0.844 25 H 0.099 0.901 26 H 0.105 0.895 27 H 0.118 0.882 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.874 -3.815 4.944 10.851 hybrid contribution 0.226 0.060 -1.403 1.422 sum -8.649 -3.755 3.541 10.072 Atomic orbital electron populations 1.23493 0.72944 1.05578 1.02446 1.86274 1.25709 1.30077 1.86926 1.17895 0.82366 0.82165 0.76177 1.90910 1.64765 1.36280 1.59179 1.49194 1.00206 1.14056 1.73865 1.23396 0.82132 0.90960 1.01829 1.23038 0.94805 0.94123 0.99458 1.18088 0.88553 0.93063 0.93308 0.97367 1.21433 0.92134 1.49485 0.93049 0.92117 1.25477 0.95914 0.95497 1.00332 1.70163 0.97274 1.49947 1.35572 0.85944 0.77717 0.77055 0.83388 1.19808 1.21762 1.21440 1.21956 0.98461 0.99097 0.92096 1.22239 0.92118 0.99994 1.03323 1.23144 1.04588 1.02520 0.93142 1.23566 0.80669 0.93285 1.02391 0.91947 0.92377 0.84429 0.90089 0.89485 0.88249 0.93700 0.91433 0.91711 0.91593 0.89242 0.88925 0.88747 0.89351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.07 10.56 113.37 1.20 2.27 16 2 O -0.38 -11.82 10.55 -55.46 -0.59 -12.40 16 3 C 0.66 24.58 8.92 129.79 1.16 25.74 16 4 O -0.62 -26.05 16.86 19.80 0.33 -25.72 16 5 N -0.63 -22.85 3.61 -966.32 -3.49 -26.34 16 6 C 0.14 4.87 8.11 86.49 0.70 5.58 16 7 C -0.10 -3.32 3.66 -10.12 -0.04 -3.36 16 8 C 0.09 3.75 2.05 -11.54 -0.02 3.73 16 9 H 0.01 0.39 7.93 -2.39 -0.02 0.37 16 10 C -0.52 -24.76 6.87 25.60 0.18 -24.59 16 11 H 0.06 2.85 5.43 -2.91 -0.02 2.84 16 12 C 0.03 1.44 5.29 84.65 0.45 1.89 16 13 N -0.89 -46.53 10.85 21.45 0.23 -46.30 16 14 Si 0.93 41.16 29.54 68.60 2.03 43.18 16 15 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 16 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 17 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 18 C -0.10 -3.97 4.10 -10.80 -0.04 -4.02 16 19 C -0.14 -5.68 8.53 30.62 0.26 -5.42 16 20 C -0.20 -6.65 9.75 30.62 0.30 -6.35 16 21 C 0.12 4.14 8.06 86.45 0.70 4.83 16 22 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 24 H 0.14 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 26 H 0.09 3.33 6.96 -2.39 -0.02 3.32 16 27 H 0.10 3.13 7.63 -2.39 -0.02 3.11 16 28 H 0.25 12.99 8.31 -92.71 -0.77 12.22 16 29 H 0.07 2.93 8.14 -2.39 -0.02 2.91 16 30 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 31 H 0.07 2.93 8.07 -2.39 -0.02 2.91 16 32 H 0.09 2.81 7.99 -2.39 -0.02 2.79 16 33 H 0.09 2.74 8.14 -2.38 -0.02 2.72 16 34 H 0.09 3.52 5.79 -2.39 -0.01 3.50 16 35 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -58.35 291.88 4.42 -53.93 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 1.07 Total: 13.34 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 4.83 Total: 0.31 kcal Atomic # 7 Polarization: -69.38 SS G_CDS: -3.26 Total: -72.64 kcal Atomic # 8 Polarization: -37.87 SS G_CDS: -0.25 Total: -38.12 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.18 kcal Total: -58.35 4.42 -53.93 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260301899.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.347 kcal (2) G-P(sol) polarization free energy of solvation -58.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds