Wall clock time and date at job start Mon Mar 30 2020 21:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34635 * 116.99910 * 2 1 4 4 O 1.21510 * 120.00102 * 0.02562 * 3 2 1 5 5 N 1.34778 * 119.99982 * 180.02562 * 3 2 1 6 6 C 1.47070 * 136.05937 * 359.95372 * 5 3 2 7 7 C 1.53502 * 87.98500 * 152.91472 * 6 5 3 8 8 C 1.47076 * 136.05547 * 180.02562 * 5 3 2 9 9 H 1.08991 * 113.46778 * 92.30634 * 8 5 3 10 10 C 1.52996 * 113.46584 * 321.92142 * 8 5 3 11 11 H 1.08998 * 109.47765 * 320.41352 * 10 8 5 12 12 C 1.50704 * 109.47040 * 200.41226 * 10 8 5 13 13 H 1.07999 * 119.99953 * 294.92875 * 12 10 8 14 14 C 1.37879 * 119.99845 * 114.92991 * 12 10 8 15 15 N 1.31511 * 119.99889 * 184.77485 * 14 12 10 16 16 Si 1.86801 * 120.00211 * 4.76769 * 14 12 10 17 17 H 1.48501 * 109.46724 * 84.69339 * 16 14 12 18 18 H 1.48492 * 109.47402 * 204.69659 * 16 14 12 19 19 H 1.48504 * 109.47131 * 324.69849 * 16 14 12 20 20 C 1.52997 * 109.47149 * 80.41596 * 10 8 5 21 21 C 1.53001 * 117.50171 * 242.14082 * 20 10 8 22 22 C 1.52998 * 117.50244 * 173.47977 * 20 10 8 23 23 H 1.09002 * 109.47282 * 60.00124 * 1 2 3 24 24 H 1.09008 * 109.46907 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47023 * 299.99440 * 1 2 3 26 26 H 1.08996 * 113.46838 * 267.69238 * 6 5 3 27 27 H 1.08995 * 113.46494 * 38.07350 * 6 5 3 28 28 H 1.09004 * 114.20392 * 272.48208 * 7 6 5 29 29 H 1.08995 * 114.20601 * 139.65619 * 7 6 5 30 30 H 0.97000 * 120.00058 * 180.02562 * 15 14 12 31 31 H 1.09007 * 115.54859 * 27.80612 * 20 10 8 32 32 H 1.09004 * 117.49644 * 359.97438 * 21 20 10 33 33 H 1.09002 * 117.50618 * 145.01581 * 21 20 10 34 34 H 1.09002 * 117.50055 * 214.97904 * 22 20 10 35 35 H 1.08998 * 117.49662 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4091 1.2702 -0.0005 6 6 4.5200 0.3065 -0.0003 7 6 5.3740 1.3732 -0.6998 8 6 4.4132 2.3449 -0.0002 9 1 4.7393 2.6339 0.9988 10 6 4.0215 3.5448 -0.8649 11 1 3.5459 3.1932 -1.7804 12 6 5.2551 4.3377 -1.2121 13 1 5.8133 4.8365 -0.4336 14 6 5.6710 4.4265 -2.5237 15 7 6.7977 5.0386 -2.8162 16 14 4.6344 3.6772 -3.8850 17 1 3.5834 4.6427 -4.2953 18 1 5.4997 3.3627 -5.0501 19 1 3.9959 2.4304 -3.3918 20 6 3.0450 4.4334 -0.0918 21 6 1.6429 4.6174 -0.6760 22 6 2.6506 5.7685 -0.7263 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 4.8747 0.0531 0.9987 27 1 4.3319 -0.5728 -0.6163 28 1 5.2926 1.3687 -1.7867 29 1 6.4024 1.4271 -0.3427 30 1 7.0901 5.1013 -3.7389 31 1 3.1374 4.3998 0.9939 32 1 1.4164 4.1057 -1.6114 33 1 0.8130 4.7053 0.0251 34 1 2.4832 6.6134 -0.0582 35 1 3.0872 6.0141 -1.6944 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260537058.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:00:30 Heat of formation + Delta-G solvation = -9.009507 kcal Electronic energy + Delta-G solvation = -18187.111232 eV Core-core repulsion = 15381.092109 eV Total energy + Delta-G solvation = -2806.019123 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.22526 -38.58109 -36.24123 -35.53933 -32.61914 -30.15894 -29.12373 -26.97526 -24.74779 -22.56659 -21.84311 -21.22191 -19.37950 -18.98367 -17.51928 -16.97054 -16.34570 -16.03693 -15.02006 -14.49386 -14.12461 -13.56737 -13.35531 -13.12999 -12.93144 -12.47678 -12.03655 -11.71919 -11.68504 -11.58016 -10.98269 -10.81680 -10.50095 -10.38966 -10.29732 -10.16010 -9.76486 -9.57454 -9.27000 -8.91535 -8.62526 -8.34378 -8.16239 -6.10673 -4.08441 2.49802 3.26517 3.34864 3.38047 3.38924 4.30815 4.39024 5.01746 5.08600 5.22234 5.28099 5.34922 5.52795 5.54889 5.63256 5.78466 5.80891 6.00313 6.07766 6.17379 6.21314 6.47253 6.62949 6.65632 6.69941 6.74420 6.88322 7.02049 7.24651 7.24885 7.49471 7.73060 8.27395 8.52032 8.84177 8.96863 9.53061 11.02278 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.023952 B = 0.010347 C = 0.008979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.720291 B = 2705.479791 C = 3117.482065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 O -0.382 6.382 3 C 0.661 3.339 4 O -0.551 6.551 5 N -0.632 5.632 6 C 0.096 3.904 7 C -0.132 4.132 8 C 0.172 3.828 9 H 0.084 0.916 10 C 0.034 3.966 11 H 0.047 0.953 12 C -0.493 4.493 13 H 0.077 0.923 14 C 0.078 3.922 15 N -0.897 5.897 16 Si 0.866 3.134 17 H -0.276 1.276 18 H -0.290 1.290 19 H -0.265 1.265 20 C -0.109 4.109 21 C -0.151 4.151 22 C -0.185 4.185 23 H 0.059 0.941 24 H 0.094 0.906 25 H 0.058 0.942 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.264 0.736 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.123 -9.973 4.752 13.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 O -0.297 6.297 3 C 0.416 3.584 4 O -0.438 6.438 5 N -0.375 5.375 6 C -0.027 4.027 7 C -0.170 4.170 8 C 0.072 3.928 9 H 0.102 0.898 10 C 0.014 3.986 11 H 0.065 0.935 12 C -0.531 4.531 13 H 0.095 0.905 14 C -0.124 4.124 15 N -0.534 5.534 16 Si 0.694 3.306 17 H -0.201 1.201 18 H -0.216 1.216 19 H -0.190 1.190 20 C -0.127 4.127 21 C -0.188 4.188 22 C -0.222 4.222 23 H 0.078 0.922 24 H 0.112 0.888 25 H 0.077 0.923 26 H 0.097 0.903 27 H 0.088 0.912 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.074 0.926 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.516 -9.629 4.599 13.052 hybrid contribution -0.751 -0.363 -0.719 1.101 sum -8.267 -9.992 3.880 13.536 Atomic orbital electron populations 1.23028 0.75569 1.02520 1.02376 1.86223 1.23199 1.32500 1.87781 1.17583 0.81866 0.81859 0.77061 1.91063 1.63304 1.33932 1.55536 1.48811 1.00058 1.13461 1.75136 1.23040 0.84900 0.94470 1.00335 1.23283 0.98343 0.94206 1.01155 1.23178 0.80991 0.89405 0.99266 0.89842 1.19137 0.94807 0.90696 0.93919 0.93538 1.20729 1.08025 1.30381 0.94005 0.90534 1.24997 0.94400 0.94762 0.98197 1.69882 1.20855 1.43556 1.19139 0.87074 0.80784 0.80649 0.82102 1.20147 1.21624 1.19004 1.22165 0.95386 0.97965 0.97202 1.22556 0.93089 1.01599 1.01602 1.22887 1.04501 0.91982 1.02825 0.92248 0.88802 0.92285 0.90326 0.91156 0.89024 0.88988 0.92632 0.90668 0.90862 0.90935 0.90944 0.89146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.74 10.56 101.05 1.07 1.81 16 2 O -0.38 -6.35 10.59 -40.31 -0.43 -6.77 16 3 C 0.66 12.90 8.86 54.06 0.48 13.38 16 4 O -0.55 -11.79 12.05 -19.28 -0.23 -12.02 16 5 N -0.63 -11.88 3.57 -183.21 -0.65 -12.53 16 6 C 0.10 1.43 8.64 -8.49 -0.07 1.35 16 7 C -0.13 -2.30 7.52 -26.20 -0.20 -2.49 16 8 C 0.17 3.41 3.38 -72.37 -0.24 3.16 16 9 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 10 C 0.03 0.79 1.60 -91.77 -0.15 0.64 16 11 H 0.05 1.17 4.24 -51.93 -0.22 0.95 16 12 C -0.49 -12.96 7.71 -34.44 -0.27 -13.23 16 13 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 14 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 15 N -0.90 -26.15 13.96 55.43 0.77 -25.38 16 16 Si 0.87 21.36 26.74 -169.99 -4.55 16.81 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 19 H -0.26 -6.38 6.13 56.52 0.35 -6.04 16 20 C -0.11 -2.44 4.13 -90.62 -0.37 -2.81 16 21 C -0.15 -3.26 7.31 -26.69 -0.20 -3.46 16 22 C -0.18 -4.04 9.76 -26.69 -0.26 -4.30 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.09 0.82 8.14 -51.92 -0.42 0.40 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.09 1.77 7.34 -51.93 -0.38 1.39 16 29 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 30 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.08 1.65 8.06 -51.93 -0.42 1.23 16 32 H 0.07 1.67 7.90 -51.93 -0.41 1.26 16 33 H 0.07 1.48 8.13 -51.93 -0.42 1.06 16 34 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.09 2.15 7.96 -51.93 -0.41 1.73 16 LS Contribution 287.33 15.07 4.33 4.33 Total: -1.00 -30.71 287.33 -6.32 -37.03 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -5.26 Total: 2.42 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -0.31 Total: -3.89 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.12 Total: -37.91 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -0.66 Total: -18.80 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.55 Total: 16.81 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.71 -6.32 -37.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260537058.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.021 kcal (2) G-P(sol) polarization free energy of solvation -30.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds