Wall clock time and date at job start Mon Mar 30 2020 21:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35989 * 116.99983 * 2 1 4 4 N 1.31110 * 125.95813 * 0.15339 * 3 2 1 5 5 N 1.40070 * 108.18535 * 180.27298 * 4 3 2 6 6 C 1.46504 * 125.98857 * 179.73877 * 5 4 3 7 7 C 1.34947 * 108.02724 * 359.74040 * 5 4 3 8 8 C 1.35277 * 107.82515 * 359.97438 * 7 5 4 9 9 C 1.50709 * 126.06061 * 179.97438 * 8 7 5 10 10 H 1.08998 * 109.46809 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47118 * 300.02662 * 9 8 7 12 12 N 1.46901 * 109.47136 * 295.44756 * 11 9 8 13 13 C 1.52996 * 109.46819 * 60.02633 * 9 8 7 14 14 C 1.50705 * 109.47273 * 174.61986 * 13 9 8 15 15 H 1.07999 * 119.99190 * 355.07705 * 14 13 9 16 16 C 1.37875 * 120.00282 * 175.07664 * 14 13 9 17 17 N 1.31514 * 119.99779 * 180.27938 * 16 14 13 18 18 Si 1.86802 * 120.00080 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.46824 * 89.99923 * 18 16 14 20 20 H 1.48495 * 109.47036 * 210.00149 * 18 16 14 21 21 H 1.48495 * 109.46942 * 330.00322 * 18 16 14 22 22 H 1.09000 * 109.47268 * 299.99649 * 1 2 3 23 23 H 1.08993 * 109.47040 * 60.00353 * 1 2 3 24 24 H 1.09004 * 109.46972 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47290 * 270.00175 * 6 5 4 26 26 H 1.09001 * 109.46893 * 29.99750 * 6 5 4 27 27 H 1.08990 * 109.47364 * 150.00182 * 6 5 4 28 28 H 1.07999 * 126.08785 * 179.97438 * 7 5 4 29 29 H 1.08997 * 109.47532 * 55.45223 * 11 9 8 30 30 H 1.09009 * 109.46975 * 175.45167 * 11 9 8 31 31 H 1.00900 * 110.99833 * 174.79258 * 12 11 9 32 32 H 1.00896 * 111.00063 * 298.74718 * 12 11 9 33 33 H 1.09005 * 109.47339 * 54.62135 * 13 9 8 34 34 H 1.08998 * 109.47337 * 294.61790 * 13 9 8 35 35 H 0.97005 * 119.99583 * 179.72319 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 7 1.4503 2.3794 0.0028 5 7 2.4368 3.3738 -0.0046 6 6 2.2015 4.8198 -0.0099 7 6 3.6419 2.7665 -0.0062 8 6 3.4321 1.4301 0.0006 9 6 4.4982 0.3648 0.0010 10 1 4.0287 -0.6189 0.0069 11 6 5.3641 0.5093 -1.2520 12 7 4.5459 0.2529 -2.4449 13 6 5.3733 0.5197 1.2464 14 6 6.3547 -0.6219 1.3160 15 1 6.3025 -1.4235 0.5940 16 6 7.3190 -0.6431 2.3012 17 7 8.1788 -1.6366 2.3585 18 14 7.4096 0.7438 3.5493 19 1 6.5594 0.4117 4.7207 20 1 8.8160 0.9198 3.9924 21 1 6.9254 2.0021 2.9271 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 2.1397 5.1742 -1.0388 26 1 1.2665 5.0376 0.5062 27 1 3.0233 5.3235 0.4990 28 1 4.6027 3.2596 -0.0120 29 1 5.7688 1.5202 -1.2995 30 1 6.1834 -0.2086 -1.2123 31 1 5.0725 0.4247 -3.2882 32 1 4.1758 -0.6856 -2.4345 33 1 4.7437 0.5124 2.1362 34 1 5.9167 1.4631 1.1936 35 1 8.8597 -1.6494 3.0492 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261060316.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:00:33 Heat of formation + Delta-G solvation = 39.054715 kcal Electronic energy + Delta-G solvation = -17413.828259 eV Core-core repulsion = 14642.186108 eV Total energy + Delta-G solvation = -2771.642151 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.93976 -37.80874 -35.96399 -32.67637 -32.40322 -31.05991 -28.98562 -27.65063 -26.22638 -24.80041 -22.48137 -21.23344 -20.47622 -18.75410 -17.39635 -16.53229 -15.80406 -15.70999 -14.97683 -14.71644 -14.63737 -14.08151 -14.00769 -13.45335 -12.89257 -12.63009 -12.43218 -12.40654 -11.88701 -11.71487 -11.60940 -11.07857 -10.87488 -10.63488 -10.46952 -10.03141 -9.62738 -9.54697 -9.09322 -8.53732 -8.49725 -8.00649 -7.58558 -5.99723 -3.96300 2.28268 2.67483 3.34025 3.36890 3.41158 3.44086 3.71200 4.49304 4.76394 5.21554 5.22594 5.27774 5.34879 5.36062 5.43068 5.43348 5.55720 5.72444 5.79633 6.16270 6.28558 6.34427 6.50293 6.76583 6.87995 6.93944 7.35585 7.38654 7.56563 7.70678 7.76580 7.86548 8.00728 8.13764 8.59197 9.05228 9.63487 11.13663 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.022019 B = 0.007565 C = 0.006989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.315769 B = 3700.588070 C = 4005.071718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.285 6.285 3 C 0.269 3.731 4 N -0.359 5.359 5 N -0.378 5.378 6 C 0.113 3.887 7 C 0.069 3.931 8 C -0.183 4.183 9 C 0.006 3.994 10 H 0.071 0.929 11 C 0.076 3.924 12 N -0.851 5.851 13 C -0.004 4.004 14 C -0.513 4.513 15 H 0.072 0.928 16 C 0.066 3.934 17 N -0.906 5.906 18 Si 0.877 3.123 19 H -0.278 1.278 20 H -0.290 1.290 21 H -0.265 1.265 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.094 0.906 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.172 0.828 29 H 0.057 0.943 30 H 0.046 0.954 31 H 0.327 0.673 32 H 0.335 0.665 33 H 0.013 0.987 34 H 0.016 0.984 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.371 10.097 -6.251 16.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.189 6.189 3 C 0.064 3.936 4 N -0.199 5.199 5 N -0.166 5.166 6 C -0.028 4.028 7 C -0.075 4.075 8 C -0.194 4.194 9 C -0.014 4.014 10 H 0.089 0.911 11 C -0.054 4.054 12 N -0.379 5.379 13 C -0.042 4.042 14 C -0.551 4.551 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.545 5.545 18 Si 0.705 3.295 19 H -0.204 1.204 20 H -0.216 1.216 21 H -0.190 1.190 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.113 0.887 25 H 0.086 0.914 26 H 0.100 0.900 27 H 0.102 0.898 28 H 0.189 0.811 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.138 0.862 32 H 0.147 0.853 33 H 0.031 0.969 34 H 0.035 0.965 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.722 11.039 -5.860 17.834 hybrid contribution 1.371 -0.288 0.551 1.505 sum -11.351 10.751 -5.309 16.511 Atomic orbital electron populations 1.22855 0.78719 1.02908 1.01455 1.86334 1.21117 1.21883 1.89541 1.20403 0.91430 0.84603 0.97115 1.77190 1.13741 0.95231 1.33710 1.47512 1.03207 1.05197 1.60650 1.21683 1.03489 0.75016 1.02662 1.22084 0.90352 0.92649 1.02380 1.19569 0.91475 0.94098 1.14296 1.19434 0.91877 0.94948 0.95191 0.91052 1.21816 0.94231 1.00360 0.88997 1.58793 1.41870 1.32829 1.04408 1.19627 0.94593 0.97326 0.92682 1.21153 1.12797 1.06863 1.14277 0.90952 1.25006 0.95458 0.95610 0.97391 1.69918 1.18404 1.31627 1.34546 0.86822 0.76928 0.83644 0.82132 1.20420 1.21575 1.18970 0.93061 0.93022 0.88720 0.91443 0.89964 0.89804 0.81080 0.92416 0.93593 0.86194 0.85335 0.96889 0.96531 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.70 101.05 1.08 1.57 16 2 O -0.28 -5.19 10.42 -19.70 -0.21 -5.40 16 3 C 0.27 5.16 7.84 -17.09 -0.13 5.02 16 4 N -0.36 -6.44 11.97 30.56 0.37 -6.08 16 5 N -0.38 -5.89 4.01 -68.17 -0.27 -6.16 16 6 C 0.11 1.13 11.47 59.85 0.69 1.81 16 7 C 0.07 1.16 10.80 -17.24 -0.19 0.97 16 8 C -0.18 -3.54 4.57 -104.90 -0.48 -4.02 16 9 C 0.01 0.12 2.36 -91.77 -0.22 -0.10 16 10 H 0.07 1.60 7.98 -51.93 -0.41 1.19 16 11 C 0.08 1.43 5.99 -3.83 -0.02 1.41 16 12 N -0.85 -13.76 9.30 -10.37 -0.10 -13.86 16 13 C 0.00 -0.10 3.37 -27.88 -0.09 -0.20 16 14 C -0.51 -14.40 8.80 -34.44 -0.30 -14.70 16 15 H 0.07 2.18 7.54 -52.49 -0.40 1.78 16 16 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 17 N -0.91 -27.83 13.96 55.43 0.77 -27.05 16 18 Si 0.88 21.77 27.57 -169.99 -4.69 17.09 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 21 H -0.26 -6.24 6.40 56.52 0.36 -5.88 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.17 2.45 8.06 -52.49 -0.42 2.03 16 29 H 0.06 1.04 7.87 -51.93 -0.41 0.63 16 30 H 0.05 0.96 6.97 -51.92 -0.36 0.60 16 31 H 0.33 4.51 9.08 -39.29 -0.36 4.15 16 32 H 0.34 5.29 9.05 -39.29 -0.36 4.94 16 33 H 0.01 0.32 7.82 -51.93 -0.41 -0.08 16 34 H 0.02 0.39 6.84 -51.93 -0.36 0.03 16 35 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 297.57 15.07 4.48 4.48 Total: -1.00 -33.66 297.57 -4.59 -38.26 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -5.19 Total: 5.12 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: 0.23 Total: -6.41 kcal Atomic # 7 Polarization: -53.92 SS G_CDS: 0.77 Total: -53.15 kcal Atomic # 8 Polarization: -5.19 SS G_CDS: -0.21 Total: -5.40 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.69 Total: 17.09 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -33.66 -4.59 -38.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261060316.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.311 kcal (2) G-P(sol) polarization free energy of solvation -33.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds