Wall clock time and date at job start Mon Mar 30 2020 21:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35752 * 116.99971 * 2 1 4 4 C 1.35945 * 126.19352 * 183.30584 * 3 2 1 5 5 C 1.39816 * 107.83739 * 179.84680 * 4 3 2 6 6 C 1.50705 * 125.85982 * 180.16082 * 5 4 3 7 7 N 1.46904 * 109.47031 * 95.27714 * 6 5 4 8 8 C 1.46895 * 110.99963 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.47268 * 35.00252 * 8 7 6 10 10 C 1.53002 * 109.47525 * 274.99964 * 8 7 6 11 11 C 1.50703 * 109.47082 * 154.99833 * 8 7 6 12 12 H 1.08003 * 119.99571 * 0.02562 * 11 8 7 13 13 C 1.37871 * 120.00003 * 179.97438 * 11 8 7 14 14 N 1.31512 * 120.00364 * 0.02562 * 13 11 8 15 15 Si 1.86801 * 120.00031 * 180.02562 * 13 11 8 16 16 H 1.48505 * 109.47128 * 60.00505 * 15 13 11 17 17 H 1.48497 * 109.47514 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47187 * 300.00531 * 15 13 11 19 19 N 1.30832 * 108.28269 * 0.42045 * 5 4 3 20 20 N 1.35134 * 126.19513 * 3.61700 * 3 2 1 21 21 C 1.46503 * 126.03651 * 359.96163 * 20 3 2 22 22 H 1.09002 * 109.46862 * 306.97621 * 1 2 3 23 23 H 1.09001 * 109.46911 * 66.97084 * 1 2 3 24 24 H 1.08996 * 109.47278 * 186.97562 * 1 2 3 25 25 H 1.08006 * 126.08195 * 359.96407 * 4 3 2 26 26 H 1.09000 * 109.47028 * 215.27316 * 6 5 4 27 27 H 1.09000 * 109.47030 * 335.27804 * 6 5 4 28 28 H 1.00902 * 111.00048 * 56.04676 * 7 6 5 29 29 H 1.09000 * 109.47083 * 300.00402 * 10 8 7 30 30 H 1.08999 * 109.46791 * 59.99806 * 10 8 7 31 31 H 1.08997 * 109.47144 * 179.97438 * 10 8 7 32 32 H 0.96997 * 120.00203 * 180.02562 * 14 13 11 33 33 H 1.08997 * 109.46939 * 82.76663 * 21 20 3 34 34 H 1.09005 * 109.47015 * 202.76892 * 21 20 3 35 35 H 1.08998 * 109.46981 * 322.76089 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 3.3857 1.4276 -0.0633 5 6 3.5963 2.8096 -0.0414 6 6 4.9350 3.4997 -0.0969 7 7 5.2377 3.8701 -1.4859 8 6 6.5380 4.5471 -1.5786 9 1 7.2250 4.1159 -0.8505 10 6 6.3583 6.0387 -1.2892 11 6 7.0994 4.3687 -2.9658 12 1 6.5454 3.8087 -3.7046 13 6 8.3198 4.9212 -3.2919 14 7 8.9942 5.6035 -2.3924 15 14 9.0153 4.7006 -5.0115 16 1 8.0791 5.2881 -6.0033 17 1 10.3299 5.3849 -5.1053 18 1 9.1901 3.2529 -5.2928 19 7 2.4322 3.4009 0.0411 20 7 1.4379 2.4147 0.0688 21 6 -0.0057 2.6485 0.1560 22 1 -0.3633 0.6181 0.8210 23 1 -0.3633 0.4020 -0.9458 24 1 -0.3633 -1.0200 0.1248 25 1 4.1516 0.6683 -0.1220 26 1 4.9068 4.3974 0.5206 27 1 5.7066 2.8261 0.2759 28 1 4.5038 4.4424 -1.8756 29 1 5.6714 6.4700 -2.0174 30 1 5.9522 6.1678 -0.2859 31 1 7.3233 6.5409 -1.3576 32 1 9.8526 5.9925 -2.6219 33 1 -0.3278 2.5493 1.1926 34 1 -0.2333 3.6531 -0.2007 35 1 -0.5300 1.9172 -0.4591 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300884435.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:00:51 Heat of formation + Delta-G solvation = 61.140830 kcal Electronic energy + Delta-G solvation = -16818.512124 eV Core-core repulsion = 14047.827699 eV Total energy + Delta-G solvation = -2770.684425 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.40718 -38.36366 -35.96258 -33.60743 -32.24584 -30.11291 -28.88438 -27.51055 -26.17288 -25.07461 -23.94071 -21.34886 -20.09604 -19.74356 -17.52518 -16.69044 -16.15619 -15.60390 -15.21707 -14.75573 -14.55557 -14.21483 -13.94500 -13.50294 -13.13145 -13.03190 -12.70490 -12.05192 -11.68140 -11.59462 -11.35642 -11.20392 -10.84045 -10.75111 -10.47470 -10.25529 -10.05154 -9.84556 -8.96041 -8.78924 -8.28286 -8.13395 -7.14838 -5.90779 -3.93554 2.00842 2.39090 2.92859 3.05236 3.40772 3.44001 3.48162 4.29594 4.51723 4.55516 4.71808 4.87021 4.97209 5.06944 5.25801 5.40730 5.54699 5.56985 5.67333 6.09635 6.18687 6.29565 6.41496 6.77394 6.88449 6.94509 7.17870 7.43272 7.44307 7.82272 7.91669 7.96342 8.34621 8.61409 8.68803 9.13342 9.71286 11.16315 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.042311 B = 0.004594 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.603010 B = 6093.994851 C = 6391.946174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.293 6.293 3 C 0.261 3.739 4 C -0.267 4.267 5 C 0.121 3.879 6 C 0.137 3.863 7 N -0.676 5.676 8 C 0.211 3.789 9 H 0.036 0.964 10 C -0.169 4.169 11 C -0.493 4.493 12 H 0.062 0.938 13 C 0.055 3.945 14 N -0.899 5.899 15 Si 0.898 3.102 16 H -0.279 1.279 17 H -0.289 1.289 18 H -0.277 1.277 19 N -0.291 5.291 20 N -0.410 5.410 21 C 0.083 3.917 22 H 0.061 0.939 23 H 0.060 0.940 24 H 0.104 0.896 25 H 0.155 0.845 26 H 0.037 0.963 27 H 0.087 0.913 28 H 0.329 0.671 29 H 0.027 0.973 30 H 0.006 0.994 31 H 0.089 0.911 32 H 0.259 0.741 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.461 -7.931 6.458 20.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.200 6.200 3 C 0.094 3.906 4 C -0.297 4.297 5 C -0.046 4.046 6 C 0.005 3.995 7 N -0.307 5.307 8 C 0.104 3.896 9 H 0.054 0.946 10 C -0.229 4.229 11 C -0.532 4.532 12 H 0.080 0.920 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.726 3.274 16 H -0.204 1.204 17 H -0.215 1.215 18 H -0.203 1.203 19 N -0.117 5.117 20 N -0.204 5.204 21 C -0.058 4.058 22 H 0.080 0.920 23 H 0.078 0.922 24 H 0.123 0.877 25 H 0.173 0.827 26 H 0.055 0.945 27 H 0.105 0.895 28 H 0.145 0.855 29 H 0.047 0.953 30 H 0.025 0.975 31 H 0.108 0.892 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.719 -7.661 6.395 20.336 hybrid contribution 0.144 0.103 -0.563 0.590 sum -17.575 -7.558 5.832 20.000 Atomic orbital electron populations 1.23569 0.78713 1.04757 1.01268 1.86269 1.21060 1.22465 1.90197 1.19609 0.91481 0.78748 1.00804 1.20414 0.91583 0.96817 1.20882 1.22273 0.94498 0.92063 0.95742 1.20322 0.88446 0.97547 0.93160 1.60846 1.06228 1.49699 1.13902 1.19208 0.84625 0.88271 0.97538 0.94562 1.22436 1.02856 1.01899 0.95692 1.21119 1.03163 1.32141 0.96760 0.91973 1.24934 0.96912 0.95405 0.97257 1.69873 1.14355 1.35962 1.33658 0.86567 0.77907 0.78254 0.84659 1.20449 1.21522 1.20288 1.77465 0.95521 1.10748 1.27969 1.48783 1.06731 1.03211 1.61686 1.22324 0.75881 1.05023 1.02532 0.92015 0.92168 0.87745 0.82743 0.94498 0.89470 0.85471 0.95346 0.97476 0.89231 0.93071 0.91149 0.88853 0.89282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.40 101.05 0.95 1.03 16 2 O -0.29 -3.68 10.57 -18.96 -0.20 -3.88 16 3 C 0.26 3.93 7.79 -16.92 -0.13 3.80 16 4 C -0.27 -4.52 10.76 -39.81 -0.43 -4.95 16 5 C 0.12 2.21 6.72 -82.43 -0.55 1.66 16 6 C 0.14 2.64 6.04 -4.97 -0.03 2.61 16 7 N -0.68 -15.19 6.22 -109.22 -0.68 -15.87 16 8 C 0.21 5.43 2.57 -68.86 -0.18 5.25 16 9 H 0.04 1.00 7.80 -51.93 -0.41 0.60 16 10 C -0.17 -4.19 8.94 37.16 0.33 -3.86 16 11 C -0.49 -13.93 8.84 -34.44 -0.30 -14.24 16 12 H 0.06 1.78 7.81 -52.48 -0.41 1.37 16 13 C 0.06 1.55 5.30 -17.82 -0.09 1.46 16 14 N -0.90 -26.01 11.32 55.43 0.63 -25.38 16 15 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 N -0.29 -5.17 12.57 33.66 0.42 -4.74 16 20 N -0.41 -5.92 4.02 -68.28 -0.27 -6.19 16 21 C 0.08 0.74 9.59 59.85 0.57 1.31 16 22 H 0.06 0.36 5.81 -51.93 -0.30 0.06 16 23 H 0.06 0.37 6.62 -51.93 -0.34 0.03 16 24 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.15 2.44 8.06 -52.48 -0.42 2.02 16 26 H 0.04 0.71 7.44 -51.93 -0.39 0.33 16 27 H 0.09 1.63 8.06 -51.93 -0.42 1.21 16 28 H 0.33 7.33 8.46 -39.29 -0.33 7.00 16 29 H 0.03 0.68 8.13 -51.93 -0.42 0.25 16 30 H 0.01 0.14 7.45 -51.93 -0.39 -0.24 16 31 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 32 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 33 H 0.07 0.49 7.64 -51.93 -0.40 0.09 16 34 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.09 0.55 4.65 -51.93 -0.24 0.31 16 LS Contribution 290.09 15.07 4.37 4.37 Total: -1.00 -32.17 290.09 -5.38 -37.55 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -4.76 Total: 3.23 kcal Atomic # 6 Polarization: -6.06 SS G_CDS: 0.14 Total: -5.92 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: 0.10 Total: -52.19 kcal Atomic # 8 Polarization: -3.68 SS G_CDS: -0.20 Total: -3.88 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -32.17 -5.38 -37.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300884435.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.692 kcal (2) G-P(sol) polarization free energy of solvation -32.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds