Wall clock time and date at job start Mon Mar 30 2020 21:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35752 * 116.99971 * 2 1 4 4 C 1.35945 * 126.19352 * 183.30584 * 3 2 1 5 5 C 1.39816 * 107.83739 * 179.84680 * 4 3 2 6 6 C 1.50705 * 125.85982 * 180.16082 * 5 4 3 7 7 N 1.46904 * 109.47031 * 95.27714 * 6 5 4 8 8 C 1.46895 * 110.99963 * 179.97438 * 7 6 5 9 9 H 1.09000 * 109.47268 * 35.00252 * 8 7 6 10 10 C 1.53002 * 109.47525 * 274.99964 * 8 7 6 11 11 C 1.50703 * 109.47082 * 154.99833 * 8 7 6 12 12 H 1.08003 * 119.99571 * 0.02562 * 11 8 7 13 13 C 1.37871 * 120.00003 * 179.97438 * 11 8 7 14 14 N 1.31512 * 120.00364 * 0.02562 * 13 11 8 15 15 Si 1.86801 * 120.00031 * 180.02562 * 13 11 8 16 16 H 1.48505 * 109.47128 * 60.00505 * 15 13 11 17 17 H 1.48497 * 109.47514 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47187 * 300.00531 * 15 13 11 19 19 N 1.30832 * 108.28269 * 0.42045 * 5 4 3 20 20 N 1.35134 * 126.19513 * 3.61700 * 3 2 1 21 21 C 1.46503 * 126.03651 * 359.96163 * 20 3 2 22 22 H 1.09002 * 109.46862 * 306.97621 * 1 2 3 23 23 H 1.09001 * 109.46911 * 66.97084 * 1 2 3 24 24 H 1.08996 * 109.47278 * 186.97562 * 1 2 3 25 25 H 1.08006 * 126.08195 * 359.96407 * 4 3 2 26 26 H 1.09000 * 109.47028 * 215.27316 * 6 5 4 27 27 H 1.09000 * 109.47030 * 335.27804 * 6 5 4 28 28 H 1.00902 * 111.00048 * 56.04676 * 7 6 5 29 29 H 1.09000 * 109.47083 * 300.00402 * 10 8 7 30 30 H 1.08999 * 109.46791 * 59.99806 * 10 8 7 31 31 H 1.08997 * 109.47144 * 179.97438 * 10 8 7 32 32 H 0.96997 * 120.00203 * 180.02562 * 14 13 11 33 33 H 1.08997 * 109.46939 * 82.76663 * 21 20 3 34 34 H 1.09005 * 109.47015 * 202.76892 * 21 20 3 35 35 H 1.08998 * 109.46981 * 322.76089 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 3.3857 1.4276 -0.0633 5 6 3.5963 2.8096 -0.0414 6 6 4.9350 3.4997 -0.0969 7 7 5.2377 3.8701 -1.4859 8 6 6.5380 4.5471 -1.5786 9 1 7.2250 4.1159 -0.8505 10 6 6.3583 6.0387 -1.2892 11 6 7.0994 4.3687 -2.9658 12 1 6.5454 3.8087 -3.7046 13 6 8.3198 4.9212 -3.2919 14 7 8.9942 5.6035 -2.3924 15 14 9.0153 4.7006 -5.0115 16 1 8.0791 5.2881 -6.0033 17 1 10.3299 5.3849 -5.1053 18 1 9.1901 3.2529 -5.2928 19 7 2.4322 3.4009 0.0411 20 7 1.4379 2.4147 0.0688 21 6 -0.0057 2.6485 0.1560 22 1 -0.3633 0.6181 0.8210 23 1 -0.3633 0.4020 -0.9458 24 1 -0.3633 -1.0200 0.1248 25 1 4.1516 0.6683 -0.1220 26 1 4.9068 4.3974 0.5206 27 1 5.7066 2.8261 0.2759 28 1 4.5038 4.4424 -1.8756 29 1 5.6714 6.4700 -2.0174 30 1 5.9522 6.1678 -0.2859 31 1 7.3233 6.5409 -1.3576 32 1 9.8526 5.9925 -2.6219 33 1 -0.3278 2.5493 1.1926 34 1 -0.2333 3.6531 -0.2007 35 1 -0.5300 1.9172 -0.4591 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300884435.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 21:00:51 Heat of formation + Delta-G solvation = 36.721018 kcal Electronic energy + Delta-G solvation = -16819.571046 eV Core-core repulsion = 14047.827699 eV Total energy + Delta-G solvation = -2771.743348 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.137 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.54627 -39.37563 -37.77227 -35.02076 -33.94448 -31.43205 -30.39936 -28.59760 -27.29413 -27.08550 -25.39439 -22.45983 -22.08156 -21.01445 -18.72641 -18.08810 -17.59747 -16.75057 -16.65368 -16.22476 -16.01626 -15.46293 -15.16776 -14.70183 -14.61158 -14.14085 -13.97491 -13.60117 -13.48155 -13.21697 -12.79677 -12.70293 -12.46374 -12.17480 -12.13690 -12.09146 -11.84133 -11.48439 -11.03184 -10.44063 -9.95430 -9.32332 -8.96823 -8.05366 -6.16270 0.82093 1.35874 1.46549 1.48681 1.56254 1.70224 2.11172 2.48635 3.22846 3.33871 3.83126 4.00148 4.05395 4.15979 4.28336 4.32349 4.43953 4.53288 4.64874 4.70283 4.76562 4.87777 4.92965 5.02057 5.13365 5.22206 5.42668 5.59578 5.72647 5.84286 6.29385 6.43950 6.63709 6.67145 6.78317 6.96181 7.52984 9.00174 Molecular weight = 239.14amu Principal moments of inertia in cm(-1) A = 0.042311 B = 0.004594 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.603010 B = 6093.994851 C = 6391.946174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 O -0.304 6.304 3 C 0.275 3.725 4 C -0.299 4.299 5 C 0.105 3.895 6 C 0.143 3.857 7 N -0.678 5.678 8 C 0.215 3.785 9 H 0.012 0.988 10 C -0.156 4.156 11 C -0.516 4.516 12 H 0.053 0.947 13 C 0.010 3.990 14 N -0.922 5.922 15 Si 0.961 3.039 16 H -0.273 1.273 17 H -0.283 1.283 18 H -0.274 1.274 19 N -0.315 5.315 20 N -0.401 5.401 21 C 0.068 3.932 22 H 0.079 0.921 23 H 0.073 0.927 24 H 0.132 0.868 25 H 0.154 0.846 26 H 0.036 0.964 27 H 0.087 0.913 28 H 0.329 0.671 29 H 0.029 0.971 30 H 0.025 0.975 31 H 0.065 0.935 32 H 0.261 0.739 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.472 -8.763 6.168 22.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 O -0.210 6.210 3 C 0.105 3.895 4 C -0.329 4.329 5 C -0.061 4.061 6 C 0.012 3.988 7 N -0.308 5.308 8 C 0.107 3.893 9 H 0.030 0.970 10 C -0.216 4.216 11 C -0.554 4.554 12 H 0.071 0.929 13 C -0.188 4.188 14 N -0.562 5.562 15 Si 0.787 3.213 16 H -0.198 1.198 17 H -0.209 1.209 18 H -0.199 1.199 19 N -0.142 5.142 20 N -0.197 5.197 21 C -0.071 4.071 22 H 0.098 0.902 23 H 0.091 0.909 24 H 0.150 0.850 25 H 0.172 0.828 26 H 0.054 0.946 27 H 0.105 0.895 28 H 0.146 0.854 29 H 0.048 0.952 30 H 0.044 0.956 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -19.767 -8.501 6.115 22.369 hybrid contribution 0.581 0.280 -0.410 0.765 sum -19.185 -8.222 5.705 21.638 Atomic orbital electron populations 1.24026 0.75723 1.07236 1.02730 1.86293 1.24140 1.20860 1.89745 1.19533 0.91210 0.79818 0.98916 1.20502 0.93067 0.96401 1.22900 1.21963 0.94064 0.92643 0.97400 1.20201 0.89766 0.97614 0.91224 1.60711 1.04935 1.48997 1.16174 1.18997 0.85634 0.88875 0.95807 0.97032 1.22244 1.01555 1.00932 0.96833 1.21390 1.03804 1.32500 0.97735 0.92896 1.25690 0.97118 0.94974 1.00998 1.69995 1.14562 1.36306 1.35340 0.85567 0.77333 0.78269 0.80132 1.19834 1.20853 1.19899 1.77343 0.96019 1.12234 1.28613 1.49108 1.08081 1.02394 1.60099 1.22855 0.72905 1.06370 1.04943 0.90234 0.90852 0.85019 0.82799 0.94560 0.89476 0.85411 0.95217 0.95585 0.91620 0.92951 0.88668 0.88518 0.86232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.04 9.40 113.37 1.07 1.03 16 2 O -0.30 -6.91 10.57 -90.77 -0.96 -7.87 16 3 C 0.27 7.87 7.79 83.65 0.65 8.52 16 4 C -0.30 -10.13 10.76 22.12 0.24 -9.90 16 5 C 0.11 3.86 6.72 43.09 0.29 4.14 16 6 C 0.14 5.65 6.04 85.56 0.52 6.17 16 7 N -0.68 -31.03 6.22 -499.45 -3.11 -34.13 16 8 C 0.22 11.31 2.57 44.17 0.11 11.42 16 9 H 0.01 0.67 7.80 -2.39 -0.02 0.65 16 10 C -0.16 -7.81 8.94 71.98 0.64 -7.17 16 11 C -0.52 -29.56 8.84 25.60 0.23 -29.33 16 12 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 13 C 0.01 0.59 5.30 84.65 0.45 1.03 16 14 N -0.92 -53.90 11.32 21.44 0.24 -53.66 16 15 Si 0.96 44.87 29.54 68.60 2.03 46.89 16 16 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 17 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 18 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 19 N -0.31 -10.98 12.57 -47.42 -0.60 -11.58 16 20 N -0.40 -10.84 4.02 -481.26 -1.93 -12.77 16 21 C 0.07 0.98 9.59 127.77 1.23 2.20 16 22 H 0.08 0.59 5.81 -2.39 -0.01 0.57 16 23 H 0.07 0.61 6.62 -2.39 -0.02 0.59 16 24 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.15 5.00 8.06 -2.91 -0.02 4.97 16 26 H 0.04 1.42 7.44 -2.39 -0.02 1.41 16 27 H 0.09 3.38 8.06 -2.39 -0.02 3.36 16 28 H 0.33 14.87 8.46 -89.69 -0.76 14.11 16 29 H 0.03 1.42 8.13 -2.39 -0.02 1.40 16 30 H 0.03 1.15 7.45 -2.39 -0.02 1.13 16 31 H 0.07 3.61 6.07 -2.39 -0.01 3.60 16 32 H 0.26 14.55 8.31 -92.71 -0.77 13.77 16 33 H 0.09 0.95 7.64 -2.39 -0.02 0.93 16 34 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 35 H 0.12 0.99 4.65 -2.39 -0.01 0.98 16 Total: -1.00 -69.52 290.09 1.43 -68.09 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 0.34 Total: 16.88 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: 5.42 Total: -11.86 kcal Atomic # 7 Polarization: -106.74 SS G_CDS: -5.39 Total: -112.14 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -0.96 Total: -7.87 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -69.52 1.43 -68.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300884435.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.812 kcal (2) G-P(sol) polarization free energy of solvation -69.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds